Snx3 (sorting nexin 3) - Rat Genome Database

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Gene: Snx3 (sorting nexin 3) Ictidomys tridecemlineatus
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Symbol: Snx3
Name: sorting nexin 3
RGD ID: 12679254
Description: ENCODES a protein that exhibits phosphatidylinositol-3,5-bisphosphate binding (ortholog); phosphatidylinositol-3-phosphate binding (ortholog); phosphatidylinositol-4-phosphate binding (ortholog); INVOLVED IN hemoglobin biosynthetic process (ortholog); intralumenal vesicle formation (ortholog); membrane invagination (ortholog); PARTICIPATES IN retromer-mediated pathway; ASSOCIATED WITH COVID-19 (ortholog); syndromic microphthalmia 8 (ortholog); FOUND IN clathrin-coated vesicle (ortholog); cytoplasm (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: sorting nexin-3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946100,197,614 - 100,245,855 (-)NCBI
SpeTri2.0NW_0049365644,472,171 - 4,520,732 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Snx3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946100,197,614 - 100,245,855 (-)NCBI
SpeTri2.0NW_0049365644,472,171 - 4,520,732 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNX3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl6108,211,222 - 108,261,246 (-)EnsemblGRCh38hg38GRCh38
GRCh386108,211,222 - 108,261,040 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh376108,532,426 - 108,582,244 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366108,639,410 - 108,689,156 (-)NCBINCBI36hg18NCBI36
Build 346108,639,410 - 108,689,156NCBI
Celera6109,279,209 - 109,328,955 (-)NCBI
Cytogenetic Map6q21NCBI
HuRef6106,100,989 - 106,150,564 (-)NCBIHuRef
CHM1_16108,795,674 - 108,845,435 (-)NCBICHM1_1
Snx3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391042,378,050 - 42,411,365 (+)NCBIGRCm39mm39
GRCm39 Ensembl1042,378,026 - 42,411,377 (+)Ensembl
GRCm381042,502,054 - 42,535,369 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1042,502,030 - 42,535,381 (+)EnsemblGRCm38mm10GRCm38
MGSCv371042,221,860 - 42,255,175 (+)NCBIGRCm37mm9NCBIm37
MGSCv361042,190,444 - 42,223,782 (+)NCBImm8
Celera1043,369,479 - 43,403,088 (+)NCBICelera
Cytogenetic Map10B2NCBI
cM Map1022.89NCBI
Snx3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22045,992,446 - 46,025,361 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl2045,992,720 - 46,025,379 (+)Ensembl
Rnor_6.02047,225,382 - 47,263,390 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2047,225,619 - 47,263,390 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02048,923,090 - 48,932,814 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera2053,947,195 - 53,979,808 (-)NCBICelera
Cytogenetic Map20q13NCBI
Snx3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541133,340,274 - 33,345,500 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541133,339,974 - 33,344,563 (-)NCBIChiLan1.0ChiLan1.0
SNX3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.16109,874,095 - 109,924,185 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6109,874,105 - 109,924,185 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v06106,010,633 - 106,063,331 (-)NCBIMhudiblu_PPA_v0panPan3
SNX3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11265,252,175 - 65,294,620 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1265,252,175 - 65,294,611 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1265,067,774 - 65,110,209 (-)NCBI
ROS_Cfam_1.01266,127,936 - 66,170,477 (-)NCBI
UMICH_Zoey_3.11265,483,130 - 65,525,574 (-)NCBI
UNSW_CanFamBas_1.01265,329,591 - 65,371,812 (-)NCBI
UU_Cfam_GSD_1.01265,602,544 - 65,644,998 (-)NCBI
SNX3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl174,306,453 - 74,349,335 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1174,306,450 - 74,349,735 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2183,576,787 - 83,585,208 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SNX3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11365,590,413 - 65,640,368 (+)NCBI
ChlSab1.1 Ensembl1365,589,801 - 65,640,876 (+)Ensembl
Vero_WHO_p1.0NW_02366604037,916,042 - 37,966,796 (+)NCBI
Snx3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478014,043,002 - 14,080,380 (+)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005330141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005330141   ⟹   XP_005330198
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404946100,197,614 - 100,245,855 (-)NCBI
SpeTri2.0NW_0049365644,472,171 - 4,520,732 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005330198 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005330198   ⟸   XM_005330141
- UniProtKB: I3M9D9 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000007274 ENTREZGENE
Ensembl Protein ENSSTOP00000006492 ENTREZGENE
NCBI Gene Snx3 ENTREZGENE
UniProt I3M9D9 ENTREZGENE