Symbol:
Sod1
Name:
superoxide dismutase 1
RGD ID:
12513085
Description:
ENCODES a protein that exhibits copper ion binding (ortholog); enzyme binding (ortholog); protein phosphatase 2B binding (ortholog); INVOLVED IN cellular response to ATP (ortholog); cellular response to cadmium ion (ortholog); cellular response to oxidative stress (ortholog); PARTICIPATES IN amyotrophic lateral sclerosis pathway; forkhead class A signaling pathway; hypertension pathway; ASSOCIATED WITH acute kidney failure (ortholog); alcohol use disorder (ortholog); Alcoholic Liver Diseases (ortholog); FOUND IN dense core granule (ortholog); extracellular region (ortholog); lysosome (ortholog)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
superoxide dismutase 1, soluble; superoxide dismutase [Cu-Zn]
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024404971 27,114,944 - 27,122,669 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936500 10,345,154 - 10,352,867 (-) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936500 10,345,154 - 10,352,873 (-) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Imported Annotations - PID (archival)
Sod1 Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024404971 27,114,944 - 27,122,669 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936500 10,345,154 - 10,352,867 (-) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936500 10,345,154 - 10,352,873 (-) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
SOD1 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 21 31,659,693 - 31,668,931 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 21 31,659,666 - 31,668,931 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 21 33,032,006 - 33,041,244 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 21 31,953,806 - 31,963,115 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 21 31,953,805 - 31,963,112 NCBI Celera 21 18,215,252 - 18,224,561 (+) NCBI Celera Cytogenetic Map 21 q22.11 ENTREZGENE HuRef 21 18,441,963 - 18,451,272 (+) NCBI HuRef CHM1_1 21 32,593,921 - 32,603,230 (+) NCBI CHM1_1 T2T-CHM13v2.0 21 30,027,677 - 30,036,914 (+) NCBI T2T-CHM13v2.0
Sod1 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 16 90,017,650 - 90,023,221 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 16 90,017,642 - 90,023,217 (+) Ensembl GRCm39 Ensembl GRCm38 16 90,220,762 - 90,226,333 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 16 90,220,754 - 90,226,329 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 16 90,220,987 - 90,226,569 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 16 90,109,601 - 90,115,183 (+) NCBI MGSCv36 mm8 Celera 16 90,416,380 - 90,421,958 (+) NCBI Celera Cytogenetic Map 16 C3.3 NCBI cM Map 16 51.56 NCBI
Sod1 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 11 42,942,742 - 42,948,399 (+) NCBI GRCr8 mRatBN7.2 11 29,456,673 - 29,462,249 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 11 29,456,558 - 29,462,249 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 11 38,144,681 - 38,150,257 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 11 30,816,072 - 30,821,648 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 11 30,005,455 - 30,011,012 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 11 30,363,282 - 30,368,858 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 11 30,363,280 - 30,368,862 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 11 33,982,764 - 33,988,340 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 11 29,810,766 - 29,816,342 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 11 29,810,765 - 29,816,342 (-) NCBI Celera 11 29,143,740 - 29,149,316 (+) NCBI Celera Cytogenetic Map 11 q11 NCBI
Sod1 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955407 31,263,863 - 31,267,727 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955407 31,261,451 - 31,267,657 (+) NCBI ChiLan1.0 ChiLan1.0
SOD1 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 22 27,780,102 - 27,788,228 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 21 22,639,842 - 22,647,619 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 21 18,029,831 - 18,037,526 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 21 31,411,702 - 31,419,432 (+) NCBI panpan1.1 PanPan1.1 panPan2
SOD1 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 31 26,540,291 - 26,544,212 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 31 26,486,274 - 26,662,815 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 31 26,528,080 - 26,536,169 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 31 26,654,922 - 26,662,986 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 31 26,654,409 - 26,782,319 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 31 26,600,785 - 26,608,887 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 31 26,612,632 - 26,620,712 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 31 27,118,829 - 27,126,937 (+) NCBI UU_Cfam_GSD_1.0
SOD1 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 13 195,326,649 - 195,337,729 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 13 195,326,573 - 195,335,273 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 13 205,620,994 - 205,629,705 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
SOD1
Sod1
.
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSSTOT00000004429 ⟹ ENSSTOP00000003972
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source SpeTri2.0 Ensembl NW_004936500 10,345,154 - 10,352,867 (-) Ensembl
RefSeq Acc Id:
XM_005323540 ⟹ XP_005323597
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source HiC_Itri_2 NW_024404971 27,114,944 - 27,122,669 (+) NCBI SpeTri2.0 NW_004936500 10,345,154 - 10,352,873 (-) NCBI
Sequence:
CTTCCACTCCGGTTTGCGCCGGCGTCTCCCGCTTCGTAGCCTGCAGCTCCGTTAGCCGCGCTCGGAATCGGACTGCCAGCGAGTTATGGCAACGAAGGCCGTATGCGTGCTGAAAGGCGACGGCCCGG
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RefSeq Acc Id:
XP_005323597 ⟸ XM_005323540
- UniProtKB:
I3M480 (UniProtKB/TrEMBL)
- Sequence:
MATKAVCVLKGDGPVQGTIHFEQKANKVVVSGRITGLAEGQHGFHVHQFGDNTQGCTSAGPHFNPQSKKHGGPTDEERHVGDLGNVIADKDGVANVSIEDSLISLSGQHSIIGRTMVVHEKPDDLGKG
hide sequence
Ensembl Acc Id:
ENSSTOP00000003972 ⟸ ENSSTOT00000004429
