SOD1 (superoxide dismutase 1) - Rat Genome Database

Name: SOD1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes Community Projects (beta) QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: SOD1 (superoxide dismutase 1) Sus scrofa

Analyze

Symbol:

SOD1

Name:

superoxide dismutase 1

RGD ID:

14045563

Description:

ENCODES a protein that exhibits copper ion binding (ortholog); enzyme binding (ortholog); protein phosphatase 2B binding (ortholog); INVOLVED IN action potential initiation (ortholog); apoptotic process (ortholog); auditory receptor cell stereocilium organization (ortholog); PARTICIPATES IN amyotrophic lateral sclerosis pathway; forkhead class A signaling pathway; hypertension pathway; ASSOCIATED WITH acute kidney failure (ortholog); Alcoholic Fatty Liver (ortholog); Alcoholic Liver Diseases (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle (ortholog); cytosol (ortholog); INTERACTS WITH 3-methyladenine; 6-anilino-5,8-quinolinedione; aldosterone

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

Cu-Zn-superoxide dismutase; superoxide dismutase 1, soluble; superoxide dismutase [Cu-Zn]

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SOD1 (superoxide dismutase 1)	HGNC	EggNOG, Ensembl, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Sod1 (superoxide dismutase 1, soluble)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Sod1 (superoxide dismutase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Sod1 (superoxide dismutase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SOD1 (superoxide dismutase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SOD1 (superoxide dismutase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Sod1 (superoxide dismutase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SOD1 (superoxide dismutase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sod1 (superoxide dismutase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	195,326,649 - 195,337,729 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	195,326,573 - 195,335,273 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	205,620,994 - 205,629,705 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

acute kidney failure (ISO)

Alcoholic Fatty Liver (ISO)

Alcoholic Liver Diseases (ISO)

Alzheimer's disease (ISO)

amyotrophic lateral sclerosis (ISO)

amyotrophic lateral sclerosis type 1 (ISO)

amyotrophic lateral sclerosis type 10 (ISO)

Animal Disease Models (ISO)

Animal Mammary Neoplasms (ISO)

Aortic Calcification (ISO)

aortic disease (ISO)

asphyxia neonatorum (ISO)

asthma (ISO)

atherosclerosis (ISO)

atrial fibrillation (ISO)

autosomal dominant intellectual developmental disorder 7 (ISO)

Behcet's disease (ISO)

Brain Injuries (ISO)

brain ischemia (ISO)

cardiac arrest (ISO)

cardiomyopathy (ISO)

cataract (ISO)

Chemical and Drug Induced Liver Injury (ISO)

Choroidal Neovascularization (ISO)

Chronic Hepatitis (ISO)

chronic progressive external ophthalmoplegia (ISO)

congenital diaphragmatic hernia (ISO)

congestive heart failure (ISO)

contact dermatitis (ISO)

coronary artery disease (ISO)

cutaneous leishmaniasis (ISO)

cystitis (ISO)

depressive disorder (ISO)

developmental coordination disorder (ISO)

diabetes mellitus (ISO)

diabetic angiopathy (ISO)

Diabetic Nephropathies (ISO)

diabetic retinopathy (ISO)

Disease Progression (ISO)

Down syndrome (ISO)

dry eye syndrome (ISO)

Experimental Diabetes Mellitus (ISO)

Experimental Radiation Injuries (ISO)

Fatigue (ISO)

fatty liver disease (ISO)

Fetal Growth Retardation (ISO)

fragile X-associated tremor/ataxia syndrome (ISO)

genetic disease (ISO)

Genetic Predisposition to Disease (ISO)

Gliosis (ISO)

Hearing Loss (ISO)

Hearing Loss, Noise-Induced (ISO)

Hemolysis (ISO)

hepatocellular carcinoma (ISO)

hepatorenal syndrome (ISO)

high grade glioma (ISO)

hyperglycemia (ISO)

hypertension (ISO)

hyperthyroidism (ISO)

Hypotension (ISO)

Hypothermia (ISO)

hypothyroidism (ISO)

Hypoxia (ISO)

Inflammation (ISO)

iron deficiency anemia (ISO)

ischemia (ISO)

Kidney Calculi (ISO)

liver disease (ISO)

Liver Reperfusion Injury (ISO)

low tension glaucoma (ISO)

macular degeneration (ISO)

Marfan syndrome (ISO)

MELAS syndrome (ISO)

middle cerebral artery infarction (ISO)

motor neuron disease (ISO)

Muscle Weakness (ISO)

muscular atrophy (ISO)

myelomeningocele (ISO)

myocardial infarction (ISO)

Myocardial Reperfusion Injury (ISO)

Nasal Polyps (ISO)

Necrosis (ISO)

Neoplastic Cell Transformation (ISO)

nephrosis (ISO)

Nerve Degeneration (ISO)

nervous system disease (ISO)

Neurologic Gait Disorders (ISO)

newborn respiratory distress syndrome (ISO)

non-alcoholic steatohepatitis (ISO)

nutritional deficiency disease (ISO)

obesity (ISO)

ocular hypertension (ISO)

Ovarian Neoplasms (ISO)

Oxygen-Induced Retinopathy (ISO)

pancreatic cancer (ISO)

Paralysis (ISO)

Parkinson's disease (ISO)

Parkinson's disease 20 (ISO)

Pathological Protein Aggregation (ISO)

polycystic kidney disease (ISO)

Presbycusis (ISO)

prion disease (ISO)

progressive supranuclear palsy (ISO)

Protein Deficiency (ISO)

proteinuria (ISO)

pulmonary fibrosis (ISO)

renal artery obstruction (ISO)

Reperfusion Injury (ISO)

retinal degeneration (ISO)

Retinal Neovascularization (ISO)

retinitis pigmentosa (ISO)

retinopathy of prematurity (ISO)

Schistosomiasis Mansoni (ISO)

sciatic neuropathy (ISO)

scrapie (ISO)

Sepsis (ISO)

SPASTIC TETRAPLEGIA AND AXIAL HYPOTONIA, PROGRESSIVE (ISO)

spinal cord disease (ISO)

Spinal Cord Injuries (ISO)

Stroke (ISO)

transient cerebral ischemia (ISO)

Turner syndrome (ISO)

type 1 diabetes mellitus (ISO)

type 2 diabetes mellitus (ISO)

Ureteral Calculi (ISO)

urinary bladder cancer (ISO)

Weight Loss (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

3-methyladenine (EXP)

6-anilino-5,8-quinolinedione (EXP)

aldosterone (EXP)

bisphenol A (EXP)

cadmium atom (EXP)

cadmium dichloride (EXP)

choline (EXP)

clofibrate (EXP)

cyanocob(III)alamin (EXP)

deoxynivalenol (EXP)

diethyldithiocarbamic acid (EXP)

diquat (EXP)

elemental selenium (EXP)

ethanol (EXP)

folic acid (EXP)

glycine betaine (EXP)

glyphosate (EXP)

hydrogen peroxide (EXP)

lipopolysaccharide (EXP)

ochratoxin A (EXP)

paraquat (EXP)

resveratrol (EXP)

selenium atom (EXP)

sirolimus (EXP)

sodium arsenite (EXP)

tauroursodeoxycholic acid (EXP)

zearalenone (EXP)

zinc atom (EXP)

zinc sulfate (EXP)

zinc(0) (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

action potential initiation (IEA,ISO)

anterograde axonal transport (IEA)

apoptotic process (IEA,ISO)

auditory receptor cell stereocilium organization (IEA,ISO,ISS)

cellular response to ATP (ISO)

cellular response to cadmium ion (ISO)

cellular response to oxidative stress (ISO)

cellular response to potassium ion (ISO)

determination of adult lifespan (IEA,ISO)

ectopic germ cell programmed cell death (IEA,ISO)

embryo implantation (IEA,ISO,ISS)

gene expression (IEA,ISO)

glutathione metabolic process (IEA,ISO,ISS)

heart contraction (IEA,ISO,ISS)

hydrogen peroxide biosynthetic process (IEA,ISO,ISS)

intracellular iron ion homeostasis (IEA,ISO,ISS)

locomotory behavior (IEA,ISO,ISS)

muscle cell cellular homeostasis (IEA,ISO,ISS)

myeloid cell homeostasis (IEA,ISO,ISS)

negative regulation of apoptotic process (IEA,ISO)

negative regulation of cholesterol biosynthetic process (IEA,ISS)

negative regulation of developmental process (IEA,ISO)

negative regulation of inflammatory response (IEA)

negative regulation of neuron apoptotic process (IEA,ISO,ISS)

negative regulation of reproductive process (IEA,ISO)

neurofilament cytoskeleton organization (IEA,ISO,ISS)

neuronal action potential (IEA,ISO)

ovarian follicle development (IEA,ISO,ISS)

peripheral nervous system myelin maintenance (IEA,ISO,ISS)

positive regulation of cytokine production (IEA,ISS)

positive regulation of MAPK cascade (IEA,ISS)

positive regulation of oxidative stress-induced intrinsic apoptotic signaling pathway (IEA)

positive regulation of phagocytosis (IEA)

positive regulation of superoxide anion generation (IEA)

reactive oxygen species metabolic process (IEA,ISS)

regulation of blood pressure (IEA,ISO,ISS)

regulation of mitochondrial membrane potential (IEA,ISS)

regulation of multicellular organism growth (IEA,ISO,ISS)

relaxation of vascular associated smooth muscle (IEA,ISO,ISS)

removal of superoxide radicals (IBA,IEA,ISO,ISS)

response to amphetamine (ISO)

response to antipsychotic drug (ISO)

response to axon injury (IEA,ISO,ISS)

response to carbon monoxide (ISO)

response to copper ion (ISO)

response to ethanol (IEA,ISO,ISS)

response to heat (IEA,ISO,ISS)

response to hydrogen peroxide (IEA,ISO,ISS)

response to nutrient levels (ISO)

response to organic substance (IEA,ISS)

response to oxidative stress (IEA,ISO)

response to reactive oxygen species (IEA,ISO)

response to superoxide (IEA,ISO,ISS)

response to xenobiotic stimulus (IEA,ISO)

retina homeostasis (IEA,ISO,ISS)

retrograde axonal transport (IEA)

sensory perception of sound (IEA,ISO,ISS)

spermatogenesis (IEA,ISO,ISS)

superoxide anion generation (IEA,ISO)

superoxide metabolic process (IEA,ISO,ISS)

transmission of nerve impulse (IEA,ISO,ISS)

Cellular Component

axon cytoplasm (IEA)

cytoplasm (IEA,ISS)

cytoplasmic vesicle (IEA,ISS)

cytosol (IBA,IEA,ISS)

dendrite cytoplasm (IEA,ISS)

dense core granule (ISO)

extracellular region (ISO)

extracellular space (IEA,ISS)

lysosome (ISO)

mitochondrion (IBA,IEA,ISS)

neuronal cell body (IEA,ISO,ISS)

nucleoplasm (IEA)

nucleus (IBA,IEA,ISS)

peroxisome (IBA,IEA)

plasma membrane (IEA,ISS)

protein-containing complex (IEA,ISO,ISS)

secretory granule (ISO)

Molecular Function

antioxidant activity (IEA)

copper ion binding (IBA,IEA,ISO,ISS)

enzyme binding (ISO)

identical protein binding (IEA)

metal ion binding (IEA)

oxidoreductase activity (IEA)

protein binding (ISO)

protein phosphatase 2B binding (IEA,ISO,ISS)

protein-folding chaperone binding (IEA,ISS)

small GTPase binding (IEA)

superoxide dismutase activity (IBA,IEA,ISO,ISS)

zinc ion binding (IEA,ISS)

Molecular Pathway Annotations Click to see Annotation Detail View

amyotrophic lateral sclerosis pathway (ISO)

forkhead class A signaling pathway (ISO)

hypertension pathway (ISO)

References

Additional References at PubMed

PMID:3891411	PMID:6883177	PMID:14681463	PMID:15679890	PMID:17145712	PMID:20943491	PMID:23394364	PMID:28624353

Genomics

Comparative Map Data

SOD1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	195,326,649 - 195,337,729 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	195,326,573 - 195,335,273 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	205,620,994 - 205,629,705 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SOD1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	21	31,659,693 - 31,668,931 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	21	31,659,666 - 31,668,931 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	21	33,032,006 - 33,041,244 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	21	31,953,806 - 31,963,115 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	21	31,953,805 - 31,963,112	NCBI
Celera	21	18,215,252 - 18,224,561 (+)	NCBI		Celera
Cytogenetic Map	21	q22.11	ENTREZGENE
HuRef	21	18,441,963 - 18,451,272 (+)	NCBI		HuRef
CHM1_1	21	32,593,921 - 32,603,230 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	21	30,027,677 - 30,036,914 (+)	NCBI		T2T-CHM13v2.0

Sod1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	90,017,650 - 90,023,221 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	90,017,642 - 90,023,217 (+)	Ensembl		GRCm39 Ensembl
GRCm38	16	90,220,762 - 90,226,333 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	90,220,754 - 90,226,329 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	90,220,987 - 90,226,569 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	90,109,601 - 90,115,183 (+)	NCBI		MGSCv36	mm8
Celera	16	90,416,380 - 90,421,958 (+)	NCBI		Celera
Cytogenetic Map	16	C3.3	NCBI
cM Map	16	51.56	NCBI

Sod1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	11	29,456,673 - 29,462,249 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	29,456,558 - 29,462,249 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	38,144,681 - 38,150,257 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	30,816,072 - 30,821,648 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	30,005,455 - 30,011,012 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	30,363,282 - 30,368,858 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	30,363,280 - 30,368,862 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	33,982,764 - 33,988,340 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	29,810,766 - 29,816,342 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	11	29,810,765 - 29,816,342 (-)	NCBI
Celera	11	29,143,740 - 29,149,316 (+)	NCBI		Celera
Cytogenetic Map	11	q11	NCBI

Sod1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955407	31,263,863 - 31,267,727 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955407	31,261,451 - 31,267,657 (+)	NCBI	ChiLan1.0	ChiLan1.0

SOD1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	21	22,639,842 - 22,647,619 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	21	18,029,831 - 18,037,526 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	21	31,411,702 - 31,419,432 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

SOD1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	31	26,540,291 - 26,544,212 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	31	26,486,274 - 26,662,815 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	31	26,528,080 - 26,536,169 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	31	26,654,922 - 26,662,986 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	31	26,654,409 - 26,782,319 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	31	26,600,785 - 26,608,887 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	31	26,612,632 - 26,620,712 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	31	27,118,829 - 27,126,937 (+)	NCBI		UU_Cfam_GSD_1.0

Sod1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404971	27,114,944 - 27,122,669 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936500	10,345,154 - 10,352,867 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936500	10,345,154 - 10,352,873 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SOD1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	60,461,219 - 60,472,999 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666071	3,004,172 - 3,013,463 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sod1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624745	20,032,011 - 20,037,958 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624745	20,032,003 - 20,037,958 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in SOD1
341 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium	10	4	3	5	2	23	2	3	3
Low
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001190422	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000092	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF396674	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AJ010339	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK236139	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK240282	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK346331	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK351289	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK392550	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK392718	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK400130	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY610279	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU210903	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FP325217	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01050765	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GQ913661	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GU944822	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000029514 ⟹ ENSSSCP00000026815

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	13	195,326,649 - 195,337,729 (+)	Ensembl

RefSeq Acc Id:

NM_001190422 ⟹ NP_001177351

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	13	195,326,573 - 195,335,273 (+)	NCBI

Sequence:

show sequence

CGTCGGCGTGTACTGCGGCCTCTCCCGCTGCTTCTGGTACCCTCCCAGCCCGGACCGGAGCGCG
CCCCCGCGAGTCATGGCGACGAAGGCCGTGTGTGTGCTGAAGGGCGACGGCCCGGTGCAGGGCA
CCATCTACTTCGAGCTGAAGGGAGAGAAGACAGTGTTAGTAACGGGAACCATTAAAGGACTGGC
TGAAGGTGATCATGGATTCCATGTCCATCAGTTTGGAGATAATACACAAGGCTGTACCAGTGCA
GGTCCTCACTTCAATCCTGAATCCAAAAAACATGGTGGGCCAAAGGATCAAGAGAGGCACGTTG
GAGACCTGGGCAATGTGACTGCTGGCAAAGATGGTGTGGCCACTGTGTACATCGAAGATTCTGT
GATCGCCCTCTCGGGAGACCATTCCATCATTGGCCGCACAATGGTGGTCCATGAAAAACCAGAT
GACTTGGGCAGAGGTGGAAATGAAGAAAGTACAAAGACGGGAAATGCTGGAAGTCGTTTGGCCT
GTGGTGTAATTGGGATCACCCAGTAAACATTCCCTCATGCCATGGTCTGAATGCCAGTAACTCA
TCTGTTATCTTGCTAGTTGTAGTTGTAGAAATTTAACTTGATAAACATTAAACACTGTAACCTT
AAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001177351	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAK84037	(Get FASTA)	NCBI Sequence Viewer
	ADI47520	(Get FASTA)	NCBI Sequence Viewer
	AHW83665	(Get FASTA)	NCBI Sequence Viewer
	CAA09097	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000026815
	ENSSSCP00000026815.3
	ENSSSCP00015017528.1
	ENSSSCP00015017550.1
	ENSSSCP00025012561
	ENSSSCP00030006619.1
	ENSSSCP00030006622.1
	ENSSSCP00035030755
	ENSSSCP00040027143.1
	ENSSSCP00045025801
	ENSSSCP00050031075
	ENSSSCP00055030202
	ENSSSCP00060006800.1
	ENSSSCP00060006806.1
	ENSSSCP00065039821
	ENSSSCP00070023792.1
	ENSSSCP00070023804
GenBank Protein	P04178	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001177351 ⟸ NM_001190422
- UniProtKB:	P04178 (UniProtKB/Swiss-Prot), D9D839 (UniProtKB/TrEMBL), A0A8D0VI51 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATKAVCVLKGDGPVQGTIYFELKGEKTVLVTGTIKGLAEGDHGFHVHQFGDNTQGCTSAGPHF NPESKKHGGPKDQERHVGDLGNVTAGKDGVATVYIEDSVIALSGDHSIIGRTMVVHEKPDDLGR GGNEESTKTGNAGSRLACGVIGITQ hide sequence

RefSeq Acc Id:

ENSSSCP00000026815 ⟸ ENSSSCT00000029514

Protein Domains

Superoxide dismutase copper/zinc binding

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000021355	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015033383	UniProtKB/TrEMBL
	ENSSSCG00025021718	UniProtKB/Swiss-Prot
	ENSSSCG00030010736	UniProtKB/TrEMBL
	ENSSSCG00035056538	UniProtKB/Swiss-Prot
	ENSSSCG00040047748	UniProtKB/TrEMBL
	ENSSSCG00045021700	UniProtKB/Swiss-Prot
	ENSSSCG00050053056	UniProtKB/Swiss-Prot
	ENSSSCG00055019424	UniProtKB/Swiss-Prot
	ENSSSCG00060013044	UniProtKB/TrEMBL
	ENSSSCG00065066291	UniProtKB/Swiss-Prot
	ENSSSCG00070014563	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000029514	ENTREZGENE
	ENSSSCT00000029514.4	UniProtKB/TrEMBL
	ENSSSCT00015044338.1	UniProtKB/TrEMBL
	ENSSSCT00015044405.1	UniProtKB/TrEMBL
	ENSSSCT00025029544	UniProtKB/Swiss-Prot
	ENSSSCT00030014732.1	UniProtKB/TrEMBL
	ENSSSCT00030014738.1	UniProtKB/TrEMBL
	ENSSSCT00035075531	UniProtKB/Swiss-Prot
	ENSSSCT00040064313.1	UniProtKB/TrEMBL
	ENSSSCT00045037084	UniProtKB/Swiss-Prot
	ENSSSCT00050072256	UniProtKB/Swiss-Prot
	ENSSSCT00055038009	UniProtKB/Swiss-Prot
	ENSSSCT00060017122.1	UniProtKB/TrEMBL
	ENSSSCT00060017130.1	UniProtKB/TrEMBL
	ENSSSCT00065090983	UniProtKB/Swiss-Prot
	ENSSSCT00070028562.1	UniProtKB/TrEMBL
	ENSSSCT00070028574	UniProtKB/Swiss-Prot
Gene3D-CATH	2.60.40.200	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	SOD-like_Cu/Zn_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SOD_Cu/Zn_/chaperone	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SOD_Cu/Zn_BS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SOD_Cu_Zn_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	ssc:397036	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene	SOD1	ENTREZGENE
PANTHER	PTHR10003	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SUPEROXIDE DISMUTASE [CU-ZN]	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Sod_Cu	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS	CUZNDISMTASE	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	SOD_CU_ZN_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SOD_CU_ZN_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF49329	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A2C9F3F0_PIG	UniProtKB/TrEMBL
	A0A4X1U6S5_PIG	UniProtKB/TrEMBL
	A0A8D0VI51	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1T097_PIG	UniProtKB/TrEMBL
	D9D839	ENTREZGENE, UniProtKB/TrEMBL
	P04178	ENTREZGENE
	Q95ME5_PIG	UniProtKB/TrEMBL
	SODC_PIG	UniProtKB/Swiss-Prot
VGNC ID	VGNC:108694	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIA

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - PID (archival)

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIA

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - PID (archival)