Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer VCMap
Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:photoreceptor inner segment
go back to main search page
Accession:GO:0001917 term browser browse the term
Definition:The inner segment of a vertebrate photoreceptor containing mitochondria, ribosomes and membranes where opsin molecules are assembled and passed to be part of the outer segment discs.


show annotations for term's descendants           Sort by:
 
photoreceptor inner segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aipl1 aryl hydrocarbon receptor-interacting protein-like 1 located_in ISO (MGI:3055312|PMID:14555765) RGD PMID:14555765 MGI:3055312 NCBI chr10:56,655,693...56,664,922
Ensembl chr10:56,655,693...56,664,922 		JBrowse link
G Arr3 arrestin 3 located_in ISO
IEA		 (PMID:23704327)
GO_REF:0000107		 RGD
Ensembl		 PMID:23704327 GO_REF:0000107 NCBI chr  X:65,699,881...65,712,224
Ensembl chr  X:65,698,699...65,712,153 		JBrowse link
G Asrgl1 asparaginase and isoaspartyl peptidase 1 located_in ISO
ISS		 (MGI:6244785|PMID:27106100)
GO_REF:0000024		 RGD
UniProt		 PMID:27106100 GO_REF:0000024 MGI:6244785 NCBI chr 1:206,006,103...206,027,115
Ensembl chr 1:206,006,109...206,027,108 		JBrowse link
G Atp1a3 ATPase Na+/K+ transporting subunit alpha 3 located_in ISO (MGI:4939095|PMID:21196491) RGD PMID:21196491 MGI:4939095 NCBI chr 1:80,572,790...80,601,936
Ensembl chr 1:80,572,796...80,601,918 		JBrowse link
G Atp1b2 ATPase Na+/K+ transporting subunit beta 2 located_in IEA
ISO		 GO_REF:0000107
(MGI:4939095|PMID:21196491)		 Ensembl
RGD		 PMID:21196491 GO_REF:0000107 MGI:4939095 NCBI chr10:54,318,698...54,324,933
Ensembl chr10:54,318,701...54,324,933 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 located_in ISO (MGI:3808975|PMID:18022666) RGD PMID:18022666 MGI:3808975 NCBI chr 8:59,731,912...59,765,408
Ensembl chr 8:59,731,912...59,765,607 		JBrowse link
G Bsg basigin (Ok blood group) located_in ISS
ISO		 GO_REF:0000024
(MGI:3610672|PMID:11853760), (MGI:6436439|PMID:25957687)		 UniProt
RGD		 PMID:11853760 PMID:25957687 GO_REF:0000024 MGI:3610672 MGI:6436439 NCBI chr 7:9,993,170...10,000,387
Ensembl chr 7:9,993,170...10,000,387 		JBrowse link
G Ccdc66 coiled-coil domain containing 66 located_in
is_active_in		 ISO
IBA		 (PMID:19777273)
PMID:21873635
(MGI:6158981|PMID:19777273)		 RGD PMID:19777273 PMID:21873635 MGI:6158981, RGD:13792537 NCBI chr16:2,662,125...2,694,031
Ensembl chr16:2,662,131...2,694,023 		JBrowse link
G Cdh23 cadherin-related 23 located_in IEA
ISO		 GO_REF:0000107
(MGI:2679149|PMID:14578428)		 Ensembl
RGD		 PMID:14578428 GO_REF:0000107 MGI:2679149 NCBI chr20:28,240,643...28,622,490
Ensembl chr20:28,240,645...28,622,419 		JBrowse link
G Cep250 centrosomal protein 250 located_in ISO (MGI:6317055|PMID:30998843) RGD PMID:30998843 MGI:6317055 NCBI chr 3:144,470,946...144,516,125
Ensembl chr 3:144,471,214...144,516,125 		JBrowse link
G Cerkl ceramide kinase-like located_in ISO (MGI:5571037|PMID:23142158) RGD PMID:23142158 MGI:5571037 NCBI chr 3:64,238,714...64,344,695
Ensembl chr 3:64,237,522...64,340,675 		JBrowse link
G Cfap418 cilia and flagella associated protein 418 located_in ISS
ISO		 GO_REF:0000024
(MGI:6148650|PMID:29440555)		 UniProt
RGD		 PMID:29440555 GO_REF:0000024 MGI:6148650 NCBI chr 5:23,996,395...24,015,609
Ensembl chr 5:23,996,718...24,015,605 		JBrowse link
G Cib2 calcium and integrin binding family member 2 located_in ISS
ISO		 GO_REF:0000024
(MGI:5487486|PMID:23023331)		 UniProt
RGD		 PMID:23023331 GO_REF:0000024 MGI:5487486 NCBI chr 8:54,930,265...54,947,157 JBrowse link
G Crb1 crumbs cell polarity complex component 1 IDA RGD PMID:25878282 RGD:13451131 NCBI chr13:50,801,484...50,989,261
Ensembl chr13:50,800,959...50,989,261 		JBrowse link
G Crocc ciliary rootlet coiled-coil, rootletin located_in ISO (MGI:5467890|PMID:23178122) RGD PMID:23178122 MGI:5467890 NCBI chr 5:153,320,962...153,363,734
Ensembl chr 5:153,320,962...153,363,578 		JBrowse link
G Dnm1 dynamin 1 located_in ISO (MGI:5587953|PMID:23746204)
(MGI:3717940|PMID:17525220)		 RGD PMID:17525220 PMID:23746204 MGI:3717940 MGI:5587953 NCBI chr 3:15,604,782...15,648,654
Ensembl chr 3:15,604,784...15,648,538 		JBrowse link
G Dnm2 dynamin 2 located_in ISO (MGI:5587953|PMID:23746204) RGD PMID:23746204 MGI:5587953 NCBI chr 8:19,978,313...20,060,162
Ensembl chr 8:19,978,400...20,060,157 		JBrowse link
G Dnm3 dynamin 3 located_in ISO (MGI:5587953|PMID:23746204) RGD PMID:23746204 MGI:5587953 NCBI chr13:74,359,043...74,838,135
Ensembl chr13:74,359,213...74,838,108 		JBrowse link
G Dram2 DNA damage regulated autophagy modulator 2 located_in ISS
ISO		 GO_REF:0000024
(MGI:5705208|PMID:25983245)		 UniProt
RGD		 PMID:25983245 GO_REF:0000024 MGI:5705208 NCBI chr 2:194,035,624...194,064,415
Ensembl chr 2:194,035,818...194,063,403 		JBrowse link
G Eno2 enolase 2 located_in ISO (MGI:1099351|PMID:9364238) RGD PMID:9364238 MGI:1099351 NCBI chr 4:157,572,085...157,580,971
Ensembl chr 4:157,572,088...157,580,980 		JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr13:30,673,052...30,770,213
Ensembl chr13:30,669,764...30,768,360 		JBrowse link
G Fam161a FAM161 centrosomal protein A located_in ISO (PMID:22791751)
(MGI:5438885|PMID:22791751)		 RGD PMID:22791751 MGI:5438885 NCBI chr14:97,009,449...97,027,865
Ensembl chr14:97,009,491...97,028,588 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 located_in IDA
ISO		 (MGI:6383261|PMID:31696965)
(PMID:2534964)		 RGD PMID:2534964 PMID:31696965 PMID:11931744 MGI:6383261, RGD:1599009 NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 is_active_in
located_in		 IDA
IBA
ISO		 PMID:21873635
(PMID:2534964)		 RGD PMID:2534964 PMID:17591908 PMID:21873635 RGD:2302146, RGD:13792537 NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866 		JBrowse link
G Gnat3 G protein subunit alpha transducin 3 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:17,162,500...17,212,283
Ensembl chr 4:17,162,490...17,212,283 		JBrowse link
G Gnb1 G protein subunit beta 1 IDA RGD PMID:11931744 RGD:1599009 NCBI chr 5:166,075,508...166,142,223
Ensembl chr 5:166,075,629...166,142,124 		JBrowse link
G Gnb5 G protein subunit beta 5 located_in ISO (MGI:5507748|PMID:23555598) RGD PMID:23555598 MGI:5507748 NCBI chr 8:76,076,227...76,104,151
Ensembl chr 8:76,073,306...76,105,069 		JBrowse link
G Gngt1 G protein subunit gamma transducin 1 IDA RGD PMID:11931744 RGD:1599009 NCBI chr 4:32,006,267...32,009,252
Ensembl chr 4:32,006,267...32,009,252 		JBrowse link
G Guca1a guanylate cyclase activator 1A located_in IDA
ISO		 (MGI:6437034|PMID:9620085)
(PMID:9620085)		 RGD PMID:9620085 PMID:9620085 MGI:6437034, RGD:1599354 NCBI chr 9:13,587,695...13,598,566
Ensembl chr 9:13,588,525...13,598,565 		JBrowse link
G Guca1b guanylate cyclase activator 1B is_active_in
located_in		 IDA
IBA
ISO		 PMID:21873635
(PMID:9620085)		 RGD PMID:9620085 PMID:9620085 PMID:21873635 RGD:1599354, RGD:13792537 NCBI chr 9:13,599,619...13,607,455
Ensembl chr 9:13,599,619...13,607,455 		JBrowse link
G Guk1 guanylate kinase 1 located_in ISO (MGI:6368063|PMID:29515371) RGD PMID:29515371 MGI:6368063 NCBI chr10:43,971,514...43,988,658
Ensembl chr10:43,971,509...43,980,107 		JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 IDA RGD PMID:10549657 RGD:10059381 NCBI chr 8:41,183,397...41,187,260
Ensembl chr 8:41,183,264...41,187,259 		JBrowse link
G Impg1 interphotoreceptor matrix proteoglycan 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:81,243,624...81,389,722
Ensembl chr 8:81,243,624...81,389,722 		JBrowse link
G Inha inhibin subunit alpha IDA RGD PMID:7596220 RGD:2290440 NCBI chr 9:76,994,465...76,997,366
Ensembl chr 9:76,993,589...76,997,248 		JBrowse link
G Kif17 kinesin family member 17 located_in ISO
IEA		 (MGI:4353477|PMID:19384852)
GO_REF:0000107		 RGD
Ensembl		 PMID:19384852 GO_REF:0000107 MGI:4353477 NCBI chr 5:150,482,288...150,521,471
Ensembl chr 5:150,481,578...150,519,638 		JBrowse link
G Kifap3 kinesin-associated protein 3 located_in ISO
IEA		 (MGI:4353477|PMID:19384852)
GO_REF:0000107		 RGD
Ensembl		 PMID:19384852 GO_REF:0000107 MGI:4353477 NCBI chr13:76,127,702...76,264,654
Ensembl chr13:76,127,696...76,264,650 		JBrowse link
G Magi2 membrane associated guanylate kinase, WW and PDZ domain containing 2 located_in ISS
ISO		 GO_REF:0000024
(MGI:5573004|PMID:24608321)		 UniProt
RGD		 PMID:24608321 GO_REF:0000024 MGI:5573004 NCBI chr 4:14,388,322...15,870,036
Ensembl chr 4:14,386,399...15,870,240 		JBrowse link
G Mak male germ cell-associated kinase located_in ISS
ISO		 GO_REF:0000024
(PMID:21825139)		 UniProt
RGD		 PMID:21825139 GO_REF:0000024 NCBI chr17:23,683,674...23,731,125
Ensembl chr17:23,693,878...23,730,001 		JBrowse link
G Myo3a myosin IIIA located_in
is_active_in		 ISO
IBA		 (MGI:4352610|PMID:19332056)
PMID:21873635		 RGD PMID:19332056 PMID:21873635 MGI:4352610, RGD:13792537 NCBI chr17:84,554,785...84,604,748
Ensembl chr17:84,543,552...84,759,042 		JBrowse link
G Myo3b myosin IIIB located_in
is_active_in		 ISO
IBA		 (MGI:4352610|PMID:19332056)
PMID:21873635		 RGD PMID:19332056 PMID:21873635 MGI:4352610, RGD:13792537 NCBI chr 3:54,873,704...55,226,189
Ensembl chr 3:54,820,251...55,227,373 		JBrowse link
G Myo7a myosin VIIA located_in
NOT|located_in		 ISO (PMID:8842737)
(MGI:81971|PMID:8842737)		 RGD PMID:8842737 MGI:81971 NCBI chr 1:152,342,611...152,414,171
Ensembl chr 1:152,344,448...152,414,157 		JBrowse link
G Nos1 nitric oxide synthase 1 located_in IDA PMID:17027776 BHF-UCL PMID:17027776 RGD:8554510 NCBI chr12:38,615,111...38,795,492
Ensembl chr12:38,626,714...38,710,945 		JBrowse link
G Opn1sw opsin 1, short wave sensitive located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 4:57,977,317...57,980,457
Ensembl chr 4:57,977,313...57,980,457 		JBrowse link
G Pcare photoreceptor cilium actin regulator located_in
is_active_in		 ISO
IBA		 (MGI:5636574|PMID:25616964)
PMID:21873635		 RGD PMID:25616964 PMID:21873635 MGI:5636574, RGD:13792537 NCBI chr 6:23,749,700...23,758,419
Ensembl chr 6:23,749,757...23,758,169 		JBrowse link
G Pdc phosducin located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr13:62,297,281...62,371,754
Ensembl chr13:62,358,196...62,371,754 		JBrowse link
G Phlpp2 PH domain and leucine rich repeat protein phosphatase 2 IDA RGD PMID:20089132 RGD:5131540 NCBI chr19:37,835,125...37,901,804
Ensembl chr19:37,835,125...37,905,513 		JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr17:81,496,669...81,668,180
Ensembl chr17:81,496,670...81,668,029 		JBrowse link
G Pkm pyruvate kinase M1/2 located_in ISO (MGI:6112970|PMID:26780311) RGD PMID:26780311 MGI:6112970 NCBI chr 8:60,057,629...60,079,600
Ensembl chr 8:60,057,402...60,079,599 		JBrowse link
G Prph2 peripherin 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 9:14,066,149...14,081,454
Ensembl chr 9:14,066,156...14,081,454 		JBrowse link
G Rapgef4 Rap guanine nucleotide exchange factor 4 IDA RGD PMID:19883736 RGD:2314691 NCBI chr 3:56,809,388...57,101,332
Ensembl chr 3:56,809,270...57,102,316 		JBrowse link
G Rd3 RD3 regulator of GUCY2D located_in ISO (MGI:4867355|PMID:21078983), (MGI:6368063|PMID:29515371) RGD PMID:21078983 PMID:29515371 MGI:4867355 MGI:6368063 NCBI chr13:103,551,823...103,562,925
Ensembl chr13:103,552,857...103,562,622 		JBrowse link
G Rdh11 retinol dehydrogenase 11 located_in ISO (MGI:3584215|PMID:15790565) RGD PMID:15790565 MGI:3584215 NCBI chr 6:97,979,377...97,995,252
Ensembl chr 6:97,979,378...97,995,252 		JBrowse link
G Rdh12 retinol dehydrogenase 12 located_in ISO (MGI:6271140|PMID:12226107) RGD PMID:12226107 MGI:6271140 NCBI chr 6:98,015,465...98,028,388
Ensembl chr 6:98,015,465...98,028,388 		JBrowse link
G Reep6 receptor accessory protein 6 located_in ISS
ISO		 GO_REF:0000024
(PMID:27889058)		 UniProt
RGD		 PMID:27889058 GO_REF:0000024 NCBI chr 7:9,373,927...9,380,845
Ensembl chr 7:9,373,927...9,380,597 		JBrowse link
G Rgs9 regulator of G-protein signaling 9 located_in ISO (MGI:5507748|PMID:23555598) RGD PMID:23555598 MGI:5507748 NCBI chr10:94,195,265...94,270,892
Ensembl chr10:94,197,054...94,270,892 		JBrowse link
G Rho rhodopsin located_in ISO (MGI:4456964|PMID:10399916)
(PMID:11767049)		 RGD PMID:10399916 PMID:11767049 MGI:4456964 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773 		JBrowse link
G Rp1 RP1, axonemal microtubule associated located_in ISO (PMID:11773008)
(MGI:2156902|PMID:11773008)		 RGD PMID:11773008 MGI:2156902 NCBI chr 5:15,121,104...15,582,363
Ensembl chr 5:15,121,133...15,579,363 		JBrowse link
G Rs1 retinoschisin 1 located_in ISO (MGI:4939095|PMID:21196491) RGD PMID:21196491 MGI:4939095 NCBI chr  X:33,963,657...33,992,115
Ensembl chr  X:33,963,657...33,992,115 		JBrowse link
G Sag S-antigen visual arrestin is_active_in
located_in		 IDA
IBA
ISO
IEA		 PMID:21873635
(MGI:5462139|PMID:22869374)
GO_REF:0000107		 RGD
Ensembl		 PMID:22869374 PMID:10396627 PMID:21873635 GO_REF:0000107 MGI:5462139, RGD:6893629, RGD:13792537 NCBI chr 9:88,467,797...88,508,821
Ensembl chr 9:88,469,376...88,508,820 		JBrowse link
G Shank2 SH3 and multiple ankyrin repeat domains 2 part_of
located_in		 ISO
ISS		 (MGI:5306573|PMID:19299912)
GO_REF:0000024		 RGD
BHF-UCL		 PMID:19299912 GO_REF:0000024 MGI:5306573 NCBI chr 1:199,146,210...199,590,962
Ensembl chr 1:199,169,429...199,589,394 		JBrowse link
G Slc2a1 solute carrier family 2 member 1 located_in IEA
ISO		 GO_REF:0000044
(MGI:6436439|PMID:25957687)		 UniProt
RGD		 PMID:25957687 GO_REF:0000044 MGI:6436439 NCBI chr 5:132,717,196...132,745,416
Ensembl chr 5:132,717,196...132,745,416 		JBrowse link
G Snap25 synaptosome associated protein 25 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:124,041,898...124,123,761
Ensembl chr 3:124,041,898...124,123,760 		JBrowse link
G Stx3 syntaxin 3 located_in ISS
ISO		 GO_REF:0000024
(MGI:7258358|PMID:33974130)		 UniProt
RGD		 PMID:33974130 GO_REF:0000024 MGI:7258358 NCBI chr 1:208,617,018...208,686,240
Ensembl chr 1:208,639,115...208,685,805 		JBrowse link
G Tmem30a transmembrane protein 30A located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:80,728,749...80,757,197
Ensembl chr 8:80,729,619...80,753,248 		JBrowse link
G Tulp1 TUB like protein 1 located_in ISO (MGI:2138027|PMID:11481257), (MGI:2388540|PMID:10549638), (MGI:3717940|PMID:17525220), (MGI:4397555|PMID:19218615) RGD PMID:10549638 PMID:11481257 PMID:17525220 PMID:19218615 MGI:2138027 MGI:2388540 MGI:3717940 MGI:4397555 NCBI chr20:6,412,170...6,424,312
Ensembl chr20:6,412,171...6,424,073 		JBrowse link
G Ush1c USH1 protein network component harmonin is_active_in
located_in		 IDA
IBA
ISO		 PMID:21873635
(MGI:2679149|PMID:14578428), (MGI:3774983|PMID:17906286)		 RGD PMID:14578428 PMID:17906286 PMID:14578428 PMID:21873635 MGI:2679149 MGI:3774983, RGD:1303964, RGD:13792537 NCBI chr 1:96,695,303...96,743,671
Ensembl chr 1:96,695,307...96,743,671 		JBrowse link
G Ush1g USH1 protein network component sans located_in ISO (MGI:3774983|PMID:17906286)
(PMID:24608321)		 RGD PMID:17906286 PMID:24608321 MGI:3774983 NCBI chr10:100,559,721...100,563,590
Ensembl chr10:100,557,629...100,563,590 		JBrowse link
G Ush2a usherin colocalizes_with
located_in		 IDA
IEA
ISO		 GO_REF:0000107
(MGI:4950337|PMID:21212183)		 Ensembl
RGD		 PMID:21212183 PMID:16434480 GO_REF:0000107 MGI:4950337, RGD:1600128 NCBI chr13:99,837,445...100,503,935
Ensembl chr13:99,837,445...100,503,922 		JBrowse link
G Usp45 ubiquitin specific peptidase 45 located_in ISO (PMID:30573563) RGD PMID:30573563 NCBI chr 5:35,318,621...35,392,090
Ensembl chr 5:35,318,635...35,389,420 		JBrowse link
G Whrn whirlin colocalizes_with
located_in		 IDA
IBA
ISO
IEA		 PMID:21873635
(MGI:3774983|PMID:17906286)
GO_REF:0000107		 RGD
Ensembl		 PMID:17906286 PMID:16434480 PMID:21873635 GO_REF:0000107 MGI:3774983, RGD:1600128, RGD:13792537 NCBI chr 5:76,828,308...76,911,945
Ensembl chr 5:76,828,301...76,912,223 		JBrowse link
photoreceptor inner segment membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rho rhodopsin located_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:19934218)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:19934218 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19187
    cellular anatomical entity 18928
      photoreceptor inner segment 70
        photoreceptor inner segment membrane 1
paths to the root