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ONTOLOGY REPORT - ANNOTATIONS


Term:photoreceptor inner segment
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Accession:GO:0001917 term browser browse the term
Definition:The inner segment of a vertebrate photoreceptor containing mitochondria, ribosomes and membranes where opsin molecules are assembled and passed to be part of the outer segment discs.


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photoreceptor inner segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aipl1 aryl hydrocarbon receptor-interacting protein-like 1 ISO (MGI:3055312|PMID:14555765) RGD PMID:14555765 MGI:3055312 NCBI chr10:58,599,690...58,631,194
Ensembl chr10:58,599,856...58,608,907
JBrowse link
G Arr3 arrestin 3 part_of
located_in
ISO
IEA
(PMID:23704327)
GO_REF:0000107
RGD
Ensembl
PMID:23704327 GO_REF:0000107 NCBI chr  X:70,438,590...70,452,140
Ensembl chr  X:70,438,617...70,452,067
JBrowse link
G Asrgl1 asparaginase and isoaspartyl peptidase 1 located_in ISS
ISO
GO_REF:0000024
(MGI:6244785|PMID:27106100)
UniProt
RGD
PMID:27106100 GO_REF:0000024 MGI:6244785 NCBI chr 1:225,309,737...225,329,743
Ensembl chr 1:225,309,246...225,329,770
JBrowse link
G Atp1a3 ATPase Na+/K+ transporting subunit alpha 3 ISO (MGI:4939095|PMID:21196491) RGD PMID:21196491 MGI:4939095 NCBI chr 1:81,852,423...81,881,565
Ensembl chr 1:81,852,429...81,881,549
JBrowse link
G Atp1b2 ATPase Na+/K+ transporting subunit beta 2 located_in IEA
ISO
GO_REF:0000107
(MGI:4939095|PMID:21196491)
Ensembl
RGD
PMID:21196491 GO_REF:0000107 MGI:4939095 NCBI chr10:56,205,622...56,211,879
Ensembl chr10:56,205,625...56,211,891
JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 ISO (MGI:3808975|PMID:18022666) RGD PMID:18022666 MGI:3808975 NCBI chr 8:64,115,005...64,154,432
Ensembl chr 8:64,121,392...64,154,396
JBrowse link
G Bsg basigin (Ok blood group) located_in ISS
ISO
GO_REF:0000024
(MGI:3610672|PMID:11853760), (MGI:6436439|PMID:25957687)
UniProt
RGD
PMID:11853760 PMID:25957687 GO_REF:0000024 MGI:3610672 MGI:6436439 NCBI chr 7:12,875,536...12,882,753
Ensembl chr 7:12,875,537...12,882,753
JBrowse link
G Ccdc66 coiled-coil domain containing 66 part_of
located_in
ISO
IBA
(PMID:19777273)
PMID:21873635
(MGI:6158981|PMID:19777273)
RGD PMID:19777273, PMID:21873635, PMID:21873635 MGI:6158981, RGD:13792537, RGD:13792537 NCBI chr16:3,107,119...3,139,188
Ensembl chr16:3,110,239...3,139,177
JBrowse link
G Cdh23 cadherin-related 23 located_in ISO
IEA
(MGI:2679149|PMID:14578428)
GO_REF:0000107
RGD
Ensembl
PMID:14578428 GO_REF:0000107 MGI:2679149 NCBI chr20:29,857,018...30,263,758
Ensembl chr20:29,857,637...29,990,111
JBrowse link
G Cep250 centrosomal protein 250 ISO (MGI:6317055|PMID:30998843) RGD PMID:30998843 MGI:6317055 NCBI chr 3:151,508,366...151,544,631
Ensembl chr 3:151,508,361...151,544,674
JBrowse link
G Cerkl ceramide kinase-like ISO (MGI:5571037|PMID:23142158) RGD PMID:23142158 MGI:5571037 NCBI chr 3:66,268,835...66,395,615
Ensembl chr 3:66,268,947...66,394,764
JBrowse link
G Cib2 calcium and integrin binding family member 2 located_in ISS
ISO
GO_REF:0000024
(MGI:5487486|PMID:23023331)
UniProt
RGD
PMID:23023331 GO_REF:0000024 MGI:5487486 NCBI chr 8:59,123,078...59,139,946
Ensembl chr 8:59,123,079...59,139,946
JBrowse link
G Crb1 crumbs cell polarity complex component 1 IDA RGD PMID:25878282 RGD:13451131 NCBI chr13:56,270,519...56,462,893
Ensembl chr13:56,270,781...56,462,834
JBrowse link
G Crocc ciliary rootlet coiled-coil, rootletin ISO (MGI:5467890|PMID:23178122) RGD PMID:23178122 MGI:5467890 NCBI chr 5:159,540,453...159,583,194
Ensembl chr 5:159,540,421...159,583,049
JBrowse link
G Dnm1 dynamin 1 ISO (MGI:3717940|PMID:17525220)
(MGI:5587953|PMID:23746204)
RGD PMID:17525220 PMID:23746204 MGI:3717940 MGI:5587953 NCBI chr 3:11,338,081...11,382,043
Ensembl chr 3:11,338,083...11,382,043
JBrowse link
G Dnm2 dynamin 2 ISO (MGI:5587953|PMID:23746204) RGD PMID:23746204 MGI:5587953 NCBI chr 8:22,458,869...22,540,649
Ensembl chr 8:22,458,899...22,540,524
JBrowse link
G Dnm3 dynamin 3 ISO (MGI:5587953|PMID:23746204) RGD PMID:23746204 MGI:5587953 NCBI chr13:79,906,711...80,379,967
Ensembl chr13:79,910,382...80,379,929
JBrowse link
G Dram2 DNA-damage regulated autophagy modulator 2 located_in ISS
ISO
GO_REF:0000024
(MGI:5705208|PMID:25983245)
UniProt
RGD
PMID:25983245 GO_REF:0000024 MGI:5705208 NCBI chr 2:209,160,901...209,189,641
Ensembl chr 2:209,161,047...209,188,622
JBrowse link
G Eno2 enolase 2 ISO (MGI:1099351|PMID:9364238) RGD PMID:9364238 MGI:1099351 NCBI chr 4:157,285,192...157,294,090
Ensembl chr 4:157,285,179...157,294,047
JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr13:35,622,472...35,673,449
Ensembl chr13:35,580,098...35,668,968
JBrowse link
G Fam161a FAM161 centrosomal protein A located_in ISO (PMID:22791751)
(MGI:5438885|PMID:22791751)
RGD PMID:22791751 MGI:5438885 NCBI chr14:107,785,029...107,803,765
Ensembl chr14:107,785,029...107,798,115
JBrowse link
G Gnat1 G protein subunit alpha transducin 1 located_in IDA
ISO
(PMID:2534964)
(MGI:6383261|PMID:31696965)
RGD PMID:2534964 PMID:31696965, PMID:11931744 MGI:6383261, RGD:1599009 NCBI chr 8:116,433,302...116,438,038
Ensembl chr 8:116,433,302...116,438,038
JBrowse link
G Gnat2 G protein subunit alpha transducin 2 located_in
part_of
IDA
ISO
IBA
(PMID:2534964)
PMID:21873635
RGD PMID:2534964, PMID:17591908, PMID:21873635, PMID:21873635 RGD:2302146, RGD:13792537, RGD:13792537 NCBI chr 2:210,880,754...210,890,765
Ensembl chr 2:210,880,777...210,889,881
JBrowse link
G Gnat3 G protein subunit alpha transducin 3 part_of IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 4:13,827,764...13,878,126
Ensembl chr 4:13,827,756...13,878,126
JBrowse link
G Gnb1 G protein subunit beta 1 IDA RGD PMID:11931744 RGD:1599009 NCBI chr 5:172,914,025...172,981,403
Ensembl chr 5:172,934,990...172,979,986
JBrowse link
G Gnb5 G protein subunit beta 5 ISO (MGI:5507748|PMID:23555598) RGD PMID:23555598 MGI:5507748 NCBI chr 8:82,248,951...82,286,493
Ensembl chr 8:82,257,849...82,285,184
JBrowse link
G Gngt1 G protein subunit gamma transducin 1 IDA RGD PMID:11931744 RGD:1599009 NCBI chr 4:28,972,339...28,975,419
Ensembl chr 4:28,972,434...28,975,419
JBrowse link
G Guca1a guanylate cyclase activator 1A located_in IDA
ISO
(PMID:9620085)
(MGI:6437034|PMID:9620085)
RGD PMID:9620085, PMID:9620085 MGI:6437034, RGD:1599354 NCBI chr 9:15,609,804...15,620,030
Ensembl chr 9:15,609,804...15,620,029
JBrowse link
G Guca1b guanylate cyclase activator 1B located_in IDA
ISO
(PMID:9620085) RGD PMID:9620085, PMID:9620085 RGD:1599354 NCBI chr 9:15,621,083...15,629,017
Ensembl chr 9:15,621,083...15,629,017
JBrowse link
G Guk1 guanylate kinase 1 ISO (MGI:6368063|PMID:29515371) RGD PMID:29515371 MGI:6368063 NCBI chr10:45,535,617...45,552,455
Ensembl chr10:45,535,627...45,543,897
JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 IDA RGD PMID:10549657 RGD:10059381 NCBI chr 8:44,989,401...44,993,261
Ensembl chr 8:44,990,014...44,993,179
JBrowse link
G Impg1 interphotoreceptor matrix proteoglycan 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:87,733,374...87,879,958
Ensembl chr 8:87,733,545...87,879,888
JBrowse link
G Inha inhibin subunit alpha IDA RGD PMID:7596220 RGD:2290440 NCBI chr 9:82,700,482...82,703,383
Ensembl chr 9:82,700,468...82,703,400
JBrowse link
G Mak male germ cell-associated kinase located_in ISO
ISS
(PMID:21825139)
GO_REF:0000024
RGD
UniProt
PMID:21825139 GO_REF:0000024 NCBI chr17:21,531,651...21,567,742
Ensembl chr17:21,521,505...21,568,440
JBrowse link
G MGC94199 similar to RIKEN cDNA 2610301B20; EST AI428449 ISS
ISO
GO_REF:0000024
(MGI:6148650|PMID:29440555)
UniProt
RGD
PMID:29440555 GO_REF:0000024 MGI:6148650 NCBI chr 5:24,145,829...24,165,467
NCBI chr 5:23,358,464...23,377,697
Ensembl chr 5:23,358,841...23,377,651
Ensembl chr 5:23,358,841...23,377,651
JBrowse link
G Myo3a myosin IIIA ISO (MGI:4352610|PMID:19332056) RGD PMID:19332056 MGI:4352610 NCBI chr17:88,952,635...89,167,538
Ensembl chr17:88,963,981...89,167,018
JBrowse link
G Myo3b myosin IIIB ISO (MGI:4352610|PMID:19332056) RGD PMID:19332056 MGI:4352610 NCBI chr 3:56,355,433...56,717,740
Ensembl chr 3:56,355,431...56,584,547
JBrowse link
G Myo7a myosin VIIA NOT
NOT|located_in
IDA
ISO
ISS
PMID:8842737
(PMID:8842737)
GO_REF:0000024
(MGI:81971|PMID:8842737)
RGD
UniProt
PMID:8842737, PMID:8842737, PMID:8842737 GO_REF:0000024 MGI:81971, RGD:8553559, RGD:8553559 NCBI chr 1:163,001,313...163,071,545
Ensembl chr 1:163,001,875...163,071,508
JBrowse link
G Nos1 nitric oxide synthase 1 located_in IDA PMID:17027776 BHF-UCL PMID:17027776, PMID:17027776 RGD:8554510, RGD:8554510 NCBI chr12:44,214,949...44,405,530
Ensembl chr12:44,213,943...44,520,341
JBrowse link
G Opn1sw opsin 1, short wave sensitive located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 4:56,653,840...56,656,980
Ensembl chr 4:56,653,844...56,656,980
JBrowse link
G Pcare photoreceptor cilium actin regulator part_of ISO
IBA
(MGI:5636574|PMID:25616964)
PMID:21873635
RGD PMID:25616964, PMID:21873635, PMID:21873635 MGI:5636574, RGD:13792537, RGD:13792537 NCBI chr 6:23,337,507...23,346,232
Ensembl chr 6:23,337,571...23,346,173
JBrowse link
G Pdc phosducin located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr13:67,545,430...67,558,600
Ensembl chr13:67,545,430...67,558,600
JBrowse link
G Pdzd7 PDZ domain containing 7 colocalizes_with IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:264,776,393...264,796,206
Ensembl chr 1:264,776,398...264,794,938
JBrowse link
G Phlpp2 PH domain and leucine rich repeat protein phosphatase 2 IDA RGD PMID:20089132 RGD:5131540 NCBI chr19:41,731,845...41,798,451
Ensembl chr19:41,731,646...41,798,383
JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr17:85,533,056...85,748,843 JBrowse link
G Pkm pyruvate kinase M1/2 ISO (MGI:6112970|PMID:26780311) RGD PMID:26780311 MGI:6112970 NCBI chr 8:64,480,963...64,502,957
Ensembl chr 8:64,481,172...64,502,722
JBrowse link
G Prph2 peripherin 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 9:16,085,933...16,386,176 JBrowse link
G Rapgef4 Rap guanine nucleotide exchange factor 4 IDA RGD PMID:19883736 RGD:2314691 NCBI chr 3:58,632,338...58,925,127
Ensembl chr 3:58,632,476...58,924,038
JBrowse link
G Rd3 RD3 regulator of GUCY2D ISO (MGI:4867355|PMID:21078983), (MGI:6368063|PMID:29515371) RGD PMID:21078983 PMID:29515371 MGI:4867355 MGI:6368063 NCBI chr13:110,739,645...110,749,167
Ensembl chr13:110,743,098...110,748,365
JBrowse link
G Rdh11 retinol dehydrogenase 11 ISO (MGI:3584215|PMID:15790565) RGD PMID:15790565 MGI:3584215 NCBI chr 6:102,356,498...102,372,618
Ensembl chr 6:102,356,492...102,372,611
JBrowse link
G Rdh12 retinol dehydrogenase 12 ISO (MGI:6271140|PMID:12226107) RGD PMID:12226107 MGI:6271140 NCBI chr 6:102,392,828...102,405,750
Ensembl chr 6:102,392,828...102,405,750
JBrowse link
G Reep6 receptor accessory protein 6 located_in ISO
ISS
(PMID:27889058)
GO_REF:0000024
RGD
UniProt
PMID:27889058 GO_REF:0000024 NCBI chr 7:12,240,059...12,246,814
Ensembl chr 7:12,240,060...12,246,729
JBrowse link
G Rgs9 regulator of G-protein signaling 9 ISO (MGI:5507748|PMID:23555598) RGD PMID:23555598 MGI:5507748 NCBI chr10:97,509,971...97,582,188
Ensembl chr10:97,509,971...97,582,188
JBrowse link
G Rho rhodopsin part_of ISO (PMID:11767049)
(MGI:4456964|PMID:10399916)
RGD PMID:10399916 PMID:11767049 MGI:4456964 NCBI chr 4:147,832,136...147,837,298
Ensembl chr 4:147,832,136...147,837,298
JBrowse link
G Rp1 RP1, axonemal microtubule associated located_in ISO (PMID:11773008)
(MGI:2156902|PMID:11773008)
RGD PMID:11773008 MGI:2156902 NCBI chr 5:15,005,028...15,060,508
Ensembl chr 5:15,043,955...15,060,508
JBrowse link
G Rs1 retinoschisin 1 ISO (MGI:4939095|PMID:21196491) RGD PMID:21196491 MGI:4939095 NCBI chr  X:35,749,957...35,777,243
Ensembl chr  X:35,749,957...35,777,243
JBrowse link
G Sag S-antigen visual arrestin IDA
IBA
ISO
IEA
PMID:21873635
(MGI:5462139|PMID:22869374)
GO_REF:0000107
RGD
Ensembl
PMID:22869374, PMID:10396627, PMID:21873635 GO_REF:0000107 MGI:5462139, RGD:6893629, RGD:13792537 NCBI chr 9:94,926,901...94,972,162
Ensembl chr 9:94,928,489...94,972,027
JBrowse link
G Shank2 SH3 and multiple ankyrin repeat domains 2 located_in ISS
ISO
GO_REF:0000024
(MGI:5306573|PMID:19299912)
BHF-UCL
RGD
PMID:19299912 GO_REF:0000024 MGI:5306573 NCBI chr 1:217,149,156...217,593,950
Ensembl chr 1:217,151,166...217,592,763
JBrowse link
G Slc2a1 solute carrier family 2 member 1 located_in ISO
IEA
(MGI:6436439|PMID:25957687)
GO_REF:0000044
RGD
UniProt
PMID:25957687 GO_REF:0000044 MGI:6436439 NCBI chr 5:138,154,677...138,182,897
Ensembl chr 5:138,154,673...138,182,897
JBrowse link
G Snap25 synaptosome associated protein 25 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:129,697,408...129,788,417
Ensembl chr 3:129,599,353...129,788,400
JBrowse link
G Tulp1 TUB like protein 1 ISO (MGI:2138027|PMID:11481257), (MGI:2388540|PMID:10549638), (MGI:3717940|PMID:17525220), (MGI:4397555|PMID:19218615) RGD PMID:10549638 PMID:11481257 PMID:17525220 PMID:19218615 MGI:2138027 MGI:2388540 MGI:3717940 MGI:4397555 NCBI chr20:7,931,673...7,943,601
Ensembl chr20:7,931,674...7,943,575
JBrowse link
G Ush1c USH1 protein network component harmonin IDA
ISO
(MGI:2679149|PMID:14578428), (MGI:3774983|PMID:17906286) RGD PMID:14578428 PMID:17906286, PMID:14578428 MGI:2679149 MGI:3774983, RGD:1303964 NCBI chr 1:102,207,096...102,256,779
Ensembl chr 1:102,207,096...102,255,459
JBrowse link
G Ush1g USH1 protein network component sans ISO (MGI:3774983|PMID:17906286) RGD PMID:17906286 MGI:3774983 NCBI chr10:103,866,566...103,873,416
Ensembl chr10:103,869,377...103,873,246
JBrowse link
G Ush2a usherin colocalizes_with IDA
ISO
(MGI:4950337|PMID:21212183) RGD PMID:21212183, PMID:16434480 MGI:4950337, RGD:1600128 NCBI chr13:106,750,738...107,434,195
Ensembl chr13:106,751,625...107,427,329
JBrowse link
G Usp45 ubiquitin specific peptidase 45 located_in ISO (PMID:30573563) RGD PMID:30573563 NCBI chr 5:35,916,763...35,984,525
Ensembl chr 5:35,916,804...35,984,524
JBrowse link
G Whrn whirlin colocalizes_with IDA
IBA
ISO
IEA
PMID:21873635
(MGI:3774983|PMID:17906286)
GO_REF:0000107
RGD
Ensembl
PMID:17906286, PMID:16434480, PMID:21873635 GO_REF:0000107 MGI:3774983, RGD:1600128, RGD:13792537 NCBI chr 5:79,235,541...79,317,206
Ensembl chr 5:79,234,950...79,317,206
JBrowse link
photoreceptor inner segment membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rho rhodopsin located_in IEA
ISO
ISS
GO_REF:0000107
(PMID:19934218)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:19934218 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:147,832,136...147,837,298
Ensembl chr 4:147,832,136...147,837,298
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20685
    cellular anatomical entity 20386
      photoreceptor inner segment 66
        photoreceptor inner segment membrane 1
paths to the root