ONTOLOGY REPORT - ANNOTATIONS
Term: photoreceptor inner segment
Accession: GO:0001917
browse the term
Definition: The inner segment of a vertebrate photoreceptor containing mitochondria, ribosomes and membranes where opsin molecules are assembled and passed to be part of the outer segment discs.
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Aipl1
aryl hydrocarbon receptor-interacting protein-like 1
ISO
(MGI:3055312|PMID:14555765)
RGD
PMID:14555765
MGI:3055312
NCBI chr10:58,599,690...58,631,194
Ensembl chr10:58,599,856...58,608,907
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Arr3
arrestin 3
part_of located_in
ISO IEA
(PMID:23704327) GO_REF:0000107
RGD Ensembl
PMID:23704327
GO_REF:0000107
NCBI chr X:70,438,590...70,452,140
Ensembl chr X:70,438,617...70,452,067
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Asrgl1
asparaginase and isoaspartyl peptidase 1
located_in
ISS ISO
GO_REF:0000024 (MGI:6244785|PMID:27106100)
UniProt RGD
PMID:27106100
GO_REF:0000024 MGI:6244785
NCBI chr 1:225,309,737...225,329,743
Ensembl chr 1:225,309,246...225,329,770
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Atp1a3
ATPase Na+/K+ transporting subunit alpha 3
ISO
(MGI:4939095|PMID:21196491)
RGD
PMID:21196491
MGI:4939095
NCBI chr 1:81,852,423...81,881,565
Ensembl chr 1:81,852,429...81,881,549
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Atp1b2
ATPase Na+/K+ transporting subunit beta 2
located_in
IEA ISO
GO_REF:0000107 (MGI:4939095|PMID:21196491)
Ensembl RGD
PMID:21196491
GO_REF:0000107 MGI:4939095
NCBI chr10:56,205,622...56,211,879
Ensembl chr10:56,205,625...56,211,891
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Bbs4
Bardet-Biedl syndrome 4
ISO
(MGI:3808975|PMID:18022666)
RGD
PMID:18022666
MGI:3808975
NCBI chr 8:64,115,005...64,154,432
Ensembl chr 8:64,121,392...64,154,396
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Bsg
basigin (Ok blood group)
located_in
ISS ISO
GO_REF:0000024 (MGI:3610672|PMID:11853760), (MGI:6436439|PMID:25957687)
UniProt RGD
PMID:11853760 PMID:25957687
GO_REF:0000024 MGI:3610672 MGI:6436439
NCBI chr 7:12,875,536...12,882,753
Ensembl chr 7:12,875,537...12,882,753
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Ccdc66
coiled-coil domain containing 66
part_of located_in
ISO IBA
(PMID:19777273) PMID:21873635 (MGI:6158981|PMID:19777273)
RGD
PMID:19777273 , PMID:21873635 , PMID:21873635
MGI:6158981 , RGD:13792537 , RGD:13792537
NCBI chr16:3,107,119...3,139,188
Ensembl chr16:3,110,239...3,139,177
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Cdh23
cadherin-related 23
located_in
ISO IEA
(MGI:2679149|PMID:14578428) GO_REF:0000107
RGD Ensembl
PMID:14578428
GO_REF:0000107 MGI:2679149
NCBI chr20:29,857,018...30,263,758
Ensembl chr20:29,857,637...29,990,111
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Cep250
centrosomal protein 250
ISO
(MGI:6317055|PMID:30998843)
RGD
PMID:30998843
MGI:6317055
NCBI chr 3:151,508,366...151,544,631
Ensembl chr 3:151,508,361...151,544,674
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Cerkl
ceramide kinase-like
ISO
(MGI:5571037|PMID:23142158)
RGD
PMID:23142158
MGI:5571037
NCBI chr 3:66,268,835...66,395,615
Ensembl chr 3:66,268,947...66,394,764
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Cib2
calcium and integrin binding family member 2
located_in
ISS ISO
GO_REF:0000024 (MGI:5487486|PMID:23023331)
UniProt RGD
PMID:23023331
GO_REF:0000024 MGI:5487486
NCBI chr 8:59,123,078...59,139,946
Ensembl chr 8:59,123,079...59,139,946
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Crb1
crumbs cell polarity complex component 1
IDA
RGD
PMID:25878282
RGD:13451131
NCBI chr13:56,270,519...56,462,893
Ensembl chr13:56,270,781...56,462,834
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Crocc
ciliary rootlet coiled-coil, rootletin
ISO
(MGI:5467890|PMID:23178122)
RGD
PMID:23178122
MGI:5467890
NCBI chr 5:159,540,453...159,583,194
Ensembl chr 5:159,540,421...159,583,049
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Dnm1
dynamin 1
ISO
(MGI:3717940|PMID:17525220) (MGI:5587953|PMID:23746204)
RGD
PMID:17525220 PMID:23746204
MGI:3717940 MGI:5587953
NCBI chr 3:11,338,081...11,382,043
Ensembl chr 3:11,338,083...11,382,043
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Dnm2
dynamin 2
ISO
(MGI:5587953|PMID:23746204)
RGD
PMID:23746204
MGI:5587953
NCBI chr 8:22,458,869...22,540,649
Ensembl chr 8:22,458,899...22,540,524
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Dnm3
dynamin 3
ISO
(MGI:5587953|PMID:23746204)
RGD
PMID:23746204
MGI:5587953
NCBI chr13:79,906,711...80,379,967
Ensembl chr13:79,910,382...80,379,929
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Dram2
DNA-damage regulated autophagy modulator 2
located_in
ISS ISO
GO_REF:0000024 (MGI:5705208|PMID:25983245)
UniProt RGD
PMID:25983245
GO_REF:0000024 MGI:5705208
NCBI chr 2:209,160,901...209,189,641
Ensembl chr 2:209,161,047...209,188,622
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Eno2
enolase 2
ISO
(MGI:1099351|PMID:9364238)
RGD
PMID:9364238
MGI:1099351
NCBI chr 4:157,285,192...157,294,090
Ensembl chr 4:157,285,179...157,294,047
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Epb41l5
erythrocyte membrane protein band 4.1 like 5
located_in
IEA
GO_REF:0000044
UniProt
GO_REF:0000044
NCBI chr13:35,622,472...35,673,449
Ensembl chr13:35,580,098...35,668,968
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Fam161a
FAM161 centrosomal protein A
located_in
ISO
(PMID:22791751) (MGI:5438885|PMID:22791751)
RGD
PMID:22791751
MGI:5438885
NCBI chr14:107,785,029...107,803,765
Ensembl chr14:107,785,029...107,798,115
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Gnat1
G protein subunit alpha transducin 1
located_in
IDA ISO
(PMID:2534964) (MGI:6383261|PMID:31696965)
RGD
PMID:2534964 PMID:31696965 , PMID:11931744
MGI:6383261 , RGD:1599009
NCBI chr 8:116,433,302...116,438,038
Ensembl chr 8:116,433,302...116,438,038
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Gnat2
G protein subunit alpha transducin 2
located_in part_of
IDA ISO IBA
(PMID:2534964) PMID:21873635
RGD
PMID:2534964 , PMID:17591908 , PMID:21873635 , PMID:21873635
RGD:2302146 , RGD:13792537 , RGD:13792537
NCBI chr 2:210,880,754...210,890,765
Ensembl chr 2:210,880,777...210,889,881
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Gnat3
G protein subunit alpha transducin 3
part_of
IBA
PMID:21873635
GO_Central
PMID:21873635 , PMID:21873635
RGD:13792537 , RGD:13792537
NCBI chr 4:13,827,764...13,878,126
Ensembl chr 4:13,827,756...13,878,126
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Gnb1
G protein subunit beta 1
IDA
RGD
PMID:11931744
RGD:1599009
NCBI chr 5:172,914,025...172,981,403
Ensembl chr 5:172,934,990...172,979,986
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Gnb5
G protein subunit beta 5
ISO
(MGI:5507748|PMID:23555598)
RGD
PMID:23555598
MGI:5507748
NCBI chr 8:82,248,951...82,286,493
Ensembl chr 8:82,257,849...82,285,184
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Gngt1
G protein subunit gamma transducin 1
IDA
RGD
PMID:11931744
RGD:1599009
NCBI chr 4:28,972,339...28,975,419
Ensembl chr 4:28,972,434...28,975,419
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Guca1a
guanylate cyclase activator 1A
located_in
IDA ISO
(PMID:9620085) (MGI:6437034|PMID:9620085)
RGD
PMID:9620085 , PMID:9620085
MGI:6437034 , RGD:1599354
NCBI chr 9:15,609,804...15,620,030
Ensembl chr 9:15,609,804...15,620,029
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Guca1b
guanylate cyclase activator 1B
located_in
IDA ISO
(PMID:9620085)
RGD
PMID:9620085 , PMID:9620085
RGD:1599354
NCBI chr 9:15,621,083...15,629,017
Ensembl chr 9:15,621,083...15,629,017
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Guk1
guanylate kinase 1
ISO
(MGI:6368063|PMID:29515371)
RGD
PMID:29515371
MGI:6368063
NCBI chr10:45,535,617...45,552,455
Ensembl chr10:45,535,627...45,543,897
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Hspa8
heat shock protein family A (Hsp70) member 8
IDA
RGD
PMID:10549657
RGD:10059381
NCBI chr 8:44,989,401...44,993,261
Ensembl chr 8:44,990,014...44,993,179
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Impg1
interphotoreceptor matrix proteoglycan 1
located_in
IEA
GO_REF:0000044
UniProt
GO_REF:0000044
NCBI chr 8:87,733,374...87,879,958
Ensembl chr 8:87,733,545...87,879,888
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Inha
inhibin subunit alpha
IDA
RGD
PMID:7596220
RGD:2290440
NCBI chr 9:82,700,482...82,703,383
Ensembl chr 9:82,700,468...82,703,400
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Mak
male germ cell-associated kinase
located_in
ISO ISS
(PMID:21825139) GO_REF:0000024
RGD UniProt
PMID:21825139
GO_REF:0000024
NCBI chr17:21,531,651...21,567,742
Ensembl chr17:21,521,505...21,568,440
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MGC94199
similar to RIKEN cDNA 2610301B20; EST AI428449
ISS ISO
GO_REF:0000024 (MGI:6148650|PMID:29440555)
UniProt RGD
PMID:29440555
GO_REF:0000024 MGI:6148650
NCBI chr 5:24,145,829...24,165,467 NCBI chr 5:23,358,464...23,377,697
Ensembl chr 5:23,358,841...23,377,651 Ensembl chr 5:23,358,841...23,377,651
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Myo3a
myosin IIIA
ISO
(MGI:4352610|PMID:19332056)
RGD
PMID:19332056
MGI:4352610
NCBI chr17:88,952,635...89,167,538
Ensembl chr17:88,963,981...89,167,018
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Myo3b
myosin IIIB
ISO
(MGI:4352610|PMID:19332056)
RGD
PMID:19332056
MGI:4352610
NCBI chr 3:56,355,433...56,717,740
Ensembl chr 3:56,355,431...56,584,547
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Myo7a
myosin VIIA
NOT NOT|located_in
IDA ISO ISS
PMID:8842737 (PMID:8842737) GO_REF:0000024 (MGI:81971|PMID:8842737)
RGD UniProt
PMID:8842737 , PMID:8842737 , PMID:8842737
GO_REF:0000024 MGI:81971 , RGD:8553559 , RGD:8553559
NCBI chr 1:163,001,313...163,071,545
Ensembl chr 1:163,001,875...163,071,508
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Nos1
nitric oxide synthase 1
located_in
IDA
PMID:17027776
BHF-UCL
PMID:17027776 , PMID:17027776
RGD:8554510 , RGD:8554510
NCBI chr12:44,214,949...44,405,530
Ensembl chr12:44,213,943...44,520,341
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Opn1sw
opsin 1, short wave sensitive
located_in
IEA
GO_REF:0000044
UniProt
GO_REF:0000044
NCBI chr 4:56,653,840...56,656,980
Ensembl chr 4:56,653,844...56,656,980
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Pcare
photoreceptor cilium actin regulator
part_of
ISO IBA
(MGI:5636574|PMID:25616964) PMID:21873635
RGD
PMID:25616964 , PMID:21873635 , PMID:21873635
MGI:5636574 , RGD:13792537 , RGD:13792537
NCBI chr 6:23,337,507...23,346,232
Ensembl chr 6:23,337,571...23,346,173
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Pdc
phosducin
located_in
IEA
GO_REF:0000044
UniProt
GO_REF:0000044
NCBI chr13:67,545,430...67,558,600
Ensembl chr13:67,545,430...67,558,600
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Pdzd7
PDZ domain containing 7
colocalizes_with
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 1:264,776,393...264,796,206
Ensembl chr 1:264,776,398...264,794,938
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Phlpp2
PH domain and leucine rich repeat protein phosphatase 2
IDA
RGD
PMID:20089132
RGD:5131540
NCBI chr19:41,731,845...41,798,451
Ensembl chr19:41,731,646...41,798,383
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Pip4k2a
phosphatidylinositol-5-phosphate 4-kinase type 2 alpha
located_in
IEA
GO_REF:0000044
UniProt
GO_REF:0000044
NCBI chr17:85,533,056...85,748,843
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Pkm
pyruvate kinase M1/2
ISO
(MGI:6112970|PMID:26780311)
RGD
PMID:26780311
MGI:6112970
NCBI chr 8:64,480,963...64,502,957
Ensembl chr 8:64,481,172...64,502,722
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Prph2
peripherin 2
located_in
IEA
GO_REF:0000044
UniProt
GO_REF:0000044
NCBI chr 9:16,085,933...16,386,176
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Rapgef4
Rap guanine nucleotide exchange factor 4
IDA
RGD
PMID:19883736
RGD:2314691
NCBI chr 3:58,632,338...58,925,127
Ensembl chr 3:58,632,476...58,924,038
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Rd3
RD3 regulator of GUCY2D
ISO
(MGI:4867355|PMID:21078983), (MGI:6368063|PMID:29515371)
RGD
PMID:21078983 PMID:29515371
MGI:4867355 MGI:6368063
NCBI chr13:110,739,645...110,749,167
Ensembl chr13:110,743,098...110,748,365
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Rdh11
retinol dehydrogenase 11
ISO
(MGI:3584215|PMID:15790565)
RGD
PMID:15790565
MGI:3584215
NCBI chr 6:102,356,498...102,372,618
Ensembl chr 6:102,356,492...102,372,611
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Rdh12
retinol dehydrogenase 12
ISO
(MGI:6271140|PMID:12226107)
RGD
PMID:12226107
MGI:6271140
NCBI chr 6:102,392,828...102,405,750
Ensembl chr 6:102,392,828...102,405,750
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Reep6
receptor accessory protein 6
located_in
ISO ISS
(PMID:27889058) GO_REF:0000024
RGD UniProt
PMID:27889058
GO_REF:0000024
NCBI chr 7:12,240,059...12,246,814
Ensembl chr 7:12,240,060...12,246,729
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Rgs9
regulator of G-protein signaling 9
ISO
(MGI:5507748|PMID:23555598)
RGD
PMID:23555598
MGI:5507748
NCBI chr10:97,509,971...97,582,188
Ensembl chr10:97,509,971...97,582,188
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Rho
rhodopsin
part_of
ISO
(PMID:11767049) (MGI:4456964|PMID:10399916)
RGD
PMID:10399916 PMID:11767049
MGI:4456964
NCBI chr 4:147,832,136...147,837,298
Ensembl chr 4:147,832,136...147,837,298
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Rp1
RP1, axonemal microtubule associated
located_in
ISO
(PMID:11773008) (MGI:2156902|PMID:11773008)
RGD
PMID:11773008
MGI:2156902
NCBI chr 5:15,005,028...15,060,508
Ensembl chr 5:15,043,955...15,060,508
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Rs1
retinoschisin 1
ISO
(MGI:4939095|PMID:21196491)
RGD
PMID:21196491
MGI:4939095
NCBI chr X:35,749,957...35,777,243
Ensembl chr X:35,749,957...35,777,243
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Sag
S-antigen visual arrestin
IDA IBA ISO IEA
PMID:21873635 (MGI:5462139|PMID:22869374) GO_REF:0000107
RGD Ensembl
PMID:22869374 , PMID:10396627 , PMID:21873635
GO_REF:0000107 MGI:5462139 , RGD:6893629 , RGD:13792537
NCBI chr 9:94,926,901...94,972,162
Ensembl chr 9:94,928,489...94,972,027
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Shank2
SH3 and multiple ankyrin repeat domains 2
located_in
ISS ISO
GO_REF:0000024 (MGI:5306573|PMID:19299912)
BHF-UCL RGD
PMID:19299912
GO_REF:0000024 MGI:5306573
NCBI chr 1:217,149,156...217,593,950
Ensembl chr 1:217,151,166...217,592,763
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Slc2a1
solute carrier family 2 member 1
located_in
ISO IEA
(MGI:6436439|PMID:25957687) GO_REF:0000044
RGD UniProt
PMID:25957687
GO_REF:0000044 MGI:6436439
NCBI chr 5:138,154,677...138,182,897
Ensembl chr 5:138,154,673...138,182,897
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Snap25
synaptosome associated protein 25
located_in
IEA
GO_REF:0000044
UniProt
GO_REF:0000044
NCBI chr 3:129,697,408...129,788,417
Ensembl chr 3:129,599,353...129,788,400
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Tulp1
TUB like protein 1
ISO
(MGI:2138027|PMID:11481257), (MGI:2388540|PMID:10549638), (MGI:3717940|PMID:17525220), (MGI:4397555|PMID:19218615)
RGD
PMID:10549638 PMID:11481257 PMID:17525220 PMID:19218615
MGI:2138027 MGI:2388540 MGI:3717940 MGI:4397555
NCBI chr20:7,931,673...7,943,601
Ensembl chr20:7,931,674...7,943,575
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Ush1c
USH1 protein network component harmonin
IDA ISO
(MGI:2679149|PMID:14578428), (MGI:3774983|PMID:17906286)
RGD
PMID:14578428 PMID:17906286 , PMID:14578428
MGI:2679149 MGI:3774983 , RGD:1303964
NCBI chr 1:102,207,096...102,256,779
Ensembl chr 1:102,207,096...102,255,459
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Ush1g
USH1 protein network component sans
ISO
(MGI:3774983|PMID:17906286)
RGD
PMID:17906286
MGI:3774983
NCBI chr10:103,866,566...103,873,416
Ensembl chr10:103,869,377...103,873,246
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Ush2a
usherin
colocalizes_with
IDA ISO
(MGI:4950337|PMID:21212183)
RGD
PMID:21212183 , PMID:16434480
MGI:4950337 , RGD:1600128
NCBI chr13:106,750,738...107,434,195
Ensembl chr13:106,751,625...107,427,329
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Usp45
ubiquitin specific peptidase 45
located_in
ISO
(PMID:30573563)
RGD
PMID:30573563
NCBI chr 5:35,916,763...35,984,525
Ensembl chr 5:35,916,804...35,984,524
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Whrn
whirlin
colocalizes_with
IDA IBA ISO IEA
PMID:21873635 (MGI:3774983|PMID:17906286) GO_REF:0000107
RGD Ensembl
PMID:17906286 , PMID:16434480 , PMID:21873635
GO_REF:0000107 MGI:3774983 , RGD:1600128 , RGD:13792537
NCBI chr 5:79,235,541...79,317,206
Ensembl chr 5:79,234,950...79,317,206
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Rho
rhodopsin
located_in
IEA ISO ISS
GO_REF:0000107 (PMID:19934218) GO_REF:0000024
Ensembl RGD UniProt
PMID:19934218
GO_REF:0000024 GO_REF:0000107
NCBI chr 4:147,832,136...147,837,298
Ensembl chr 4:147,832,136...147,837,298
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