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ONTOLOGY REPORT - ANNOTATIONS

Term:photoreceptor inner segment
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Accession:GO:0001917 term browser browse the term
Definition:The inner segment of a vertebrate photoreceptor containing mitochondria, ribosomes and membranes where opsin molecules are assembled and passed to be part of the outer segment discs.


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photoreceptor inner segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aipl1 aryl hydrocarbon receptor-interacting protein-like 1 located_in ISO (PMID:14555765) RGD PMID:14555765 NCBI chr10:56,655,693...56,664,922
Ensembl chr10:56,655,693...56,664,922 		JBrowse link
G Arr3 arrestin 3 located_in ISO
IEA		 (PMID:23704327)
GO_REF:0000107		 RGD
Ensembl		 PMID:23704327 GO_REF:0000107 NCBI chr  X:65,699,881...65,712,224
Ensembl chr  X:65,698,699...65,712,153 		JBrowse link
G Asrgl1 asparaginase and isoaspartyl peptidase 1 located_in ISO
IEA
ISS		 (MGI:6244785|PMID:27106100)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:27106100 GO_REF:0000024 GO_REF:0000107 MGI:6244785 NCBI chr 1:206,006,103...206,027,115
Ensembl chr 1:206,006,109...206,027,108 		JBrowse link
G Atp1a3 ATPase Na+/K+ transporting subunit alpha 3 located_in ISO (MGI:4939095|PMID:21196491) RGD PMID:21196491 MGI:4939095 NCBI chr 1:80,572,790...80,601,936
Ensembl chr 1:80,572,796...80,601,918 		JBrowse link
G Atp1b2 ATPase Na+/K+ transporting subunit beta 2 located_in IEA
ISO		 GO_REF:0000107
(MGI:4939095|PMID:21196491)		 Ensembl
RGD		 PMID:21196491 GO_REF:0000107 MGI:4939095 NCBI chr10:54,318,698...54,324,933
Ensembl chr10:54,318,701...54,324,933 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 located_in ISO (PMID:18022666) RGD PMID:18022666 NCBI chr 8:59,731,912...59,765,408
Ensembl chr 8:59,731,912...59,765,607 		JBrowse link
G Bsg basigin located_in ISS
ISO		 GO_REF:0000024
(MGI:3610672|PMID:11853760), (MGI:6436439|PMID:25957687)		 UniProt
RGD		 PMID:11853760 PMID:25957687 GO_REF:0000024 MGI:3610672 MGI:6436439 NCBI chr 7:9,993,170...10,000,387
Ensembl chr 7:9,993,170...10,000,387 		JBrowse link
G Ccdc66 coiled-coil domain containing 66 located_in
is_active_in		 ISO
IBA		 (PMID:19777273)
GO_REF:0000033
(MGI:6158981|PMID:19777273)		 RGD
GO_Central		 PMID:19777273 GO_REF:0000033 MGI:6158981 NCBI chr16:2,662,125...2,694,031
Ensembl chr16:2,662,131...2,694,023 		JBrowse link
G Cdh23 cadherin-related 23 located_in IEA
ISO		 GO_REF:0000107
(PMID:14578428)		 Ensembl
RGD		 PMID:14578428 GO_REF:0000107 NCBI chr20:28,240,643...28,622,490
Ensembl chr20:28,240,645...28,622,419 		JBrowse link
G Cep250 centrosomal protein 250 located_in ISO (MGI:6317055|PMID:30998843) RGD PMID:30998843 MGI:6317055 NCBI chr 3:144,470,946...144,516,125
Ensembl chr 3:144,471,214...144,516,125 		JBrowse link
G Cerkl ceramide kinase-like located_in ISO (PMID:23142158) RGD PMID:23142158 NCBI chr 3:64,238,714...64,344,695
Ensembl chr 3:64,237,522...64,340,675 		JBrowse link
G Cfap418 cilia and flagella associated protein 418 located_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000044
(MGI:6148650|PMID:29440555)		 UniProt
RGD		 PMID:29440555 GO_REF:0000024 GO_REF:0000044 MGI:6148650 NCBI chr 5:23,996,395...24,015,609
Ensembl chr 5:23,996,718...24,015,605 		JBrowse link
G Cib2 calcium and integrin binding family member 2 located_in ISS
ISO		 GO_REF:0000024
(MGI:5487486|PMID:23023331)		 UniProt
RGD		 PMID:23023331 GO_REF:0000024 MGI:5487486 NCBI chr 8:54,930,265...54,947,157 JBrowse link
G Crb1 crumbs cell polarity complex component 1 IDA RGD PMID:25878282 RGD:13451131 NCBI chr13:50,801,484...50,989,261
Ensembl chr13:50,800,959...50,989,261 		JBrowse link
G Crocc ciliary rootlet coiled-coil, rootletin located_in ISO (PMID:23178122) RGD PMID:23178122 NCBI chr 5:153,320,962...153,363,734
Ensembl chr 5:153,320,962...153,363,578 		JBrowse link
G Dnm1 dynamin 1 located_in IEA
ISO		 GO_REF:0000107
(PMID:23746204)		 Ensembl
RGD		 PMID:23746204 GO_REF:0000107 NCBI chr 3:15,604,782...15,648,654
Ensembl chr 3:15,604,784...15,648,538 		JBrowse link
G Dnm2 dynamin 2 located_in ISO (PMID:23746204) RGD PMID:23746204 NCBI chr 8:19,978,313...20,060,162
Ensembl chr 8:19,978,400...20,060,157 		JBrowse link
G Dnm3 dynamin 3 located_in ISO (PMID:23746204) RGD PMID:23746204 NCBI chr13:74,359,043...74,838,135
Ensembl chr13:74,359,213...74,838,108 		JBrowse link
G Dram2 DNA damage regulated autophagy modulator 2 located_in ISS
ISO		 GO_REF:0000024
(MGI:5705208|PMID:25983245)		 UniProt
RGD		 PMID:25983245 GO_REF:0000024 MGI:5705208 NCBI chr 2:194,035,624...194,064,415
Ensembl chr 2:194,035,818...194,063,403 		JBrowse link
G Dynlt1 dynein light chain Tctex-type 1 located_in ISO (MGI:4456964|PMID:10399916) RGD PMID:10399916 MGI:4456964 NCBI chr 1:46,887,017...46,893,956
Ensembl chr 1:46,887,017...46,893,881 		JBrowse link
G Eno2 enolase 2 located_in IEA
ISO		 GO_REF:0000107
(PMID:9364238)		 Ensembl
RGD		 PMID:9364238 GO_REF:0000107 NCBI chr 4:157,572,085...157,580,971
Ensembl chr 4:157,572,088...157,580,980 		JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr13:30,670,792...30,770,213
Ensembl chr13:30,669,764...30,768,360 		JBrowse link
G Fam161a FAM161 centrosomal protein A located_in ISO
IEA		 (PMID:22791751)
GO_REF:0000107
(MGI:5438885|PMID:22791751)		 RGD
Ensembl		 PMID:22791751 GO_REF:0000107 MGI:5438885 NCBI chr14:97,009,449...97,027,865
Ensembl chr14:97,009,491...97,028,588 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 located_in IDA
ISO		 (MGI:6383261|PMID:31696965)
(PMID:2534964)		 RGD PMID:2534964 PMID:31696965 PMID:11931744 MGI:6383261, RGD:1599009 NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 is_active_in
located_in		 IDA
IBA
ISO		 GO_REF:0000033
(PMID:2534964)		 GO_Central
RGD		 PMID:2534964 PMID:17591908 GO_REF:0000033, RGD:2302146 NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866 		JBrowse link
G Gnat3 G protein subunit alpha transducin 3 is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:17,162,500...17,212,283
Ensembl chr 4:17,162,490...17,212,283 		JBrowse link
G Gnb1 G protein subunit beta 1 IDA RGD PMID:11931744 RGD:1599009 NCBI chr 5:166,075,508...166,142,223
Ensembl chr 5:166,075,629...166,142,124 		JBrowse link
G Gngt1 G protein subunit gamma transducin 1 IDA RGD PMID:11931744 RGD:1599009 NCBI chr 4:32,006,267...32,009,252
Ensembl chr 4:32,006,267...32,009,252 		JBrowse link
G Guca1a guanylate cyclase activator 1A is_active_in
located_in		 IDA
IBA
ISO		 GO_REF:0000033
(MGI:6437034|PMID:9620085)
(PMID:9620085)		 GO_Central
RGD		 PMID:9620085 PMID:9620085 GO_REF:0000033 MGI:6437034, RGD:1599354 NCBI chr 9:13,588,988...13,598,566
Ensembl chr 9:13,588,525...13,598,565 		JBrowse link
G Guca1b guanylate cyclase activator 1B is_active_in
located_in		 IDA
IBA
ISO		 GO_REF:0000033
(PMID:9620085)		 GO_Central
RGD		 PMID:9620085 PMID:9620085 GO_REF:0000033, RGD:1599354 NCBI chr 9:13,599,619...13,607,455
Ensembl chr 9:13,599,619...13,607,455 		JBrowse link
G Guk1 guanylate kinase 1 located_in ISO (MGI:6368063|PMID:29515371) RGD PMID:29515371 MGI:6368063 NCBI chr10:43,971,514...43,988,658
Ensembl chr10:43,971,509...43,980,107 		JBrowse link
G Hkdc1 hexokinase domain containing 1 located_in ISO (MGI:6257383|PMID:30085091) RGD PMID:30085091 MGI:6257383 NCBI chr20:30,335,322...30,373,792
Ensembl chr20:30,335,628...30,373,867 		JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 IDA RGD PMID:10549657 RGD:10059381 NCBI chr 8:41,183,397...41,187,260
Ensembl chr 8:41,183,264...41,187,259 		JBrowse link
G Impg1 interphotoreceptor matrix proteoglycan 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:81,243,624...81,389,722
Ensembl chr 8:81,243,624...81,389,722 		JBrowse link
G Inha inhibin subunit alpha IDA RGD PMID:7596220 RGD:2290440 NCBI chr 9:76,994,465...76,997,366
Ensembl chr 9:76,993,589...76,997,248 		JBrowse link
G Kif17 kinesin family member 17 located_in ISO (PMID:19384852) RGD PMID:19384852 NCBI chr 5:150,482,288...150,521,471
Ensembl chr 5:150,481,578...150,519,638 		JBrowse link
G Kifap3 kinesin-associated protein 3 located_in ISO (PMID:19384852) RGD PMID:19384852 NCBI chr13:76,127,702...76,264,654
Ensembl chr13:76,127,696...76,264,650 		JBrowse link
G Magi2 membrane associated guanylate kinase, WW and PDZ domain containing 2 located_in ISS
ISO		 GO_REF:0000024
(MGI:5573004|PMID:24608321)		 UniProt
RGD		 PMID:24608321 GO_REF:0000024 MGI:5573004 NCBI chr 4:14,386,389...15,870,036
Ensembl chr 4:14,386,399...15,870,240 		JBrowse link
G Mak male germ cell-associated kinase located_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:21825139)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:21825139 GO_REF:0000024 GO_REF:0000107 NCBI chr17:23,683,753...23,731,125
Ensembl chr17:23,693,878...23,730,001 		JBrowse link
G Myo3a myosin IIIA is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:19332056)		 GO_Central
RGD		 PMID:19332056 GO_REF:0000033 NCBI chr17:84,543,465...84,759,562
Ensembl chr17:84,543,552...84,759,042 		JBrowse link
G Myo3b myosin IIIB is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:19332056)		 GO_Central
RGD		 PMID:19332056 GO_REF:0000033 NCBI chr 3:54,820,225...55,228,518
Ensembl chr 3:54,820,251...55,227,373 		JBrowse link
G Myo7a myosin VIIA located_in
NOT|located_in		 ISO (PMID:8842737)
(MGI:81971|PMID:8842737)		 RGD PMID:8842737 MGI:81971 NCBI chr 1:152,342,611...152,414,171
Ensembl chr 1:152,344,448...152,414,157 		JBrowse link
G Nos1 nitric oxide synthase 1 located_in IDA PMID:17027776 BHF-UCL PMID:17027776 RGD:8554510 NCBI chr12:38,615,111...38,795,492
Ensembl chr12:38,626,714...38,710,945 		JBrowse link
G Opn1sw opsin 1, short wave sensitive located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 4:57,977,317...57,980,457
Ensembl chr 4:57,977,313...57,980,457 		JBrowse link
G Pcare photoreceptor cilium actin regulator is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:25616964)		 GO_Central
RGD		 PMID:25616964 GO_REF:0000033 NCBI chr 6:23,749,700...23,758,424
Ensembl chr 6:23,749,757...23,758,169 		JBrowse link
G Pdc phosducin located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr13:62,297,281...62,371,754
Ensembl chr13:62,358,196...62,371,754 		JBrowse link
G Phlpp2 PH domain and leucine rich repeat protein phosphatase 2 IDA RGD PMID:20089132 RGD:5131540 NCBI chr19:37,835,125...37,901,804
Ensembl chr19:37,835,125...37,905,513 		JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr17:81,496,669...81,668,180
Ensembl chr17:81,496,670...81,668,029 		JBrowse link
G Prph2 peripherin 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 9:14,066,149...14,081,454
Ensembl chr 9:14,066,156...14,081,454 		JBrowse link
G Rapgef4 Rap guanine nucleotide exchange factor 4 IDA RGD PMID:19883736 RGD:2314691 NCBI chr 3:56,809,388...57,101,332
Ensembl chr 3:56,809,270...57,102,316 		JBrowse link
G Rd3 RD3 regulator of GUCY2D located_in ISO (MGI:4867355|PMID:21078983), (MGI:6368063|PMID:29515371) RGD PMID:21078983 PMID:29515371 MGI:4867355 MGI:6368063 NCBI chr13:103,551,823...103,562,925
Ensembl chr13:103,552,857...103,562,622 		JBrowse link
G Rdh11 retinol dehydrogenase 11 located_in ISO (PMID:15790565) RGD PMID:15790565 NCBI chr 6:97,979,377...97,995,252
Ensembl chr 6:97,979,378...97,995,252 		JBrowse link
G Rdh12 retinol dehydrogenase 12 located_in ISO (MGI:6271140|PMID:12226107) RGD PMID:12226107 MGI:6271140 NCBI chr 6:98,015,465...98,028,388
Ensembl chr 6:98,015,465...98,028,388 		JBrowse link
G Reep6 receptor accessory protein 6 located_in ISS
ISO		 GO_REF:0000024
(PMID:27889058)		 UniProt
RGD		 PMID:27889058 GO_REF:0000024 NCBI chr 7:9,373,927...9,380,845
Ensembl chr 7:9,373,927...9,380,597 		JBrowse link
G Rho rhodopsin located_in ISO (MGI:4456964|PMID:10399916)
(PMID:11767049)		 RGD PMID:10399916 PMID:11767049 MGI:4456964 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773 		JBrowse link
G Rp1 RP1, axonemal microtubule associated located_in ISO (PMID:11773008)
(MGI:2156902|PMID:11773008)		 RGD PMID:11773008 MGI:2156902 NCBI chr 5:15,121,104...15,582,363
Ensembl chr 5:15,121,133...15,579,363 		JBrowse link
G Rs1 retinoschisin 1 located_in ISO (MGI:4939095|PMID:21196491) RGD PMID:21196491 MGI:4939095 NCBI chr  X:33,962,440...33,992,203
Ensembl chr  X:33,963,657...33,992,115 		JBrowse link
G Sag S-antigen visual arrestin located_in
is_active_in		 IDA
ISO
IBA
IEA		 (PMID:22869374)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:22869374 PMID:10396627 GO_REF:0000033 GO_REF:0000107, RGD:6893629 NCBI chr 9:88,467,797...88,508,821
Ensembl chr 9:88,469,376...88,508,820 		JBrowse link
G Shank2 SH3 and multiple ankyrin repeat domains 2 located_in ISO
ISS		 (MGI:5306573|PMID:19299912)
GO_REF:0000024		 RGD
BHF-UCL		 PMID:19299912 GO_REF:0000024 MGI:5306573 NCBI chr 1:199,146,210...199,590,962
Ensembl chr 1:199,169,429...199,589,394 		JBrowse link
G Slc2a1 solute carrier family 2 member 1 located_in IEA
ISO		 GO_REF:0000044
(MGI:6436439|PMID:25957687)		 UniProt
RGD		 PMID:25957687 GO_REF:0000044 MGI:6436439 NCBI chr 5:132,717,196...132,745,416
Ensembl chr 5:132,717,196...132,745,416 		JBrowse link
G Snap25 synaptosome associated protein 25 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:124,041,898...124,123,761
Ensembl chr 3:124,041,898...124,123,760 		JBrowse link
G Stx3 syntaxin 3 located_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(MGI:7258358|PMID:33974130)		 UniProt
Ensembl
RGD		 PMID:33974130 GO_REF:0000024 GO_REF:0000107 MGI:7258358 NCBI chr 1:208,617,018...208,686,240
Ensembl chr 1:208,639,115...208,685,805 		JBrowse link
G Tmem30a transmembrane protein 30A located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:80,728,749...80,757,197
Ensembl chr 8:80,729,619...80,753,248 		JBrowse link
G Tulp1 TUB like protein 1 located_in ISO (MGI:4397555|PMID:19218615), (PMID:10549638), (PMID:11481257), (PMID:17525220) RGD PMID:10549638 PMID:11481257 PMID:17525220 PMID:19218615 MGI:4397555 NCBI chr20:6,412,170...6,424,103
Ensembl chr20:6,412,171...6,424,073 		JBrowse link
G Ush1c USH1 protein network component harmonin located_in
is_active_in		 IDA
ISO
IBA		 (PMID:14578428), (PMID:17906286)
GO_REF:0000033		 RGD
GO_Central		 PMID:14578428 PMID:17906286 PMID:14578428 GO_REF:0000033, RGD:1303964 NCBI chr 1:96,695,303...96,743,671
Ensembl chr 1:96,695,307...96,743,671 		JBrowse link
G Ush1g USH1 protein network component sans located_in ISO (PMID:24608321)
(PMID:17906286)		 RGD PMID:17906286 PMID:24608321 NCBI chr10:100,559,721...100,563,590
Ensembl chr10:100,557,629...100,563,590 		JBrowse link
G Ush2a usherin located_in IDA
ISO
IEA		 (PMID:21212183)
GO_REF:0000107		 RGD
Ensembl		 PMID:21212183 PMID:16434480 GO_REF:0000107, RGD:1600128 NCBI chr13:99,837,445...100,503,935
Ensembl chr13:99,837,445...100,503,922 		JBrowse link
G Usp45 ubiquitin specific peptidase 45 located_in ISO (PMID:30573563) RGD PMID:30573563 NCBI chr 5:35,318,621...35,392,090
Ensembl chr 5:35,318,635...35,389,420 		JBrowse link
G Whrn whirlin located_in IDA
ISO
IBA
IEA		 (PMID:17906286)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:17906286 PMID:16434480 GO_REF:0000033 GO_REF:0000107, RGD:1600128 NCBI chr 5:76,828,308...76,911,945
Ensembl chr 5:76,828,301...76,912,223 		JBrowse link
photoreceptor inner segment membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rho rhodopsin located_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:19934218)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:19934218 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20713
    cellular anatomical entity 20472
      photoreceptor inner segment 69
        photoreceptor inner segment membrane 1
paths to the root