Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:photoreceptor inner segment
go back to main search page
Accession:GO:0001917 term browser browse the term
Definition:The inner segment of a vertebrate photoreceptor containing mitochondria, ribosomes and membranes where opsin molecules are assembled and passed to be part of the outer segment discs.


show annotations for term's descendants           Sort by:
photoreceptor inner segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aipl1 aryl hydrocarbon receptor-interacting protein-like 1 located_in ISO (PMID:14555765) RGD PMID:14555765 NCBI chr10:56,655,693...56,664,922 JBrowse link
G Arr3 arrestin 3 located_in ISO
IEA		 (PMID:23704327)
GO_REF:0000107		 RGD
Ensembl		 PMID:23704327 GO_REF:0000107 NCBI chr  X:65,699,881...65,712,224 JBrowse link
G Asrgl1 asparaginase and isoaspartyl peptidase 1 located_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:27106100)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:27106100 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:206,006,103...206,027,115 JBrowse link
G Atp1a3 ATPase Na+/K+ transporting subunit alpha 3 located_in ISO (PMID:21196491) RGD PMID:21196491 NCBI chr 1:80,572,790...80,601,936 JBrowse link
G Atp1b2 ATPase Na+/K+ transporting subunit beta 2 located_in IEA
ISO		 GO_REF:0000107
(PMID:21196491)		 Ensembl
RGD		 PMID:21196491 GO_REF:0000107 NCBI chr10:54,318,698...54,324,933 JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 located_in ISO (PMID:18022666) RGD PMID:18022666 NCBI chr 8:59,731,912...59,765,408 JBrowse link
G Bsg basigin located_in ISS
ISO		 GO_REF:0000024
(PMID:11853760)
(PMID:25957687)		 UniProt
RGD		 PMID:11853760 PMID:25957687 GO_REF:0000024 NCBI chr 7:10,643,788...10,651,005 JBrowse link
G Ccdc66 coiled-coil domain containing 66 located_in
is_active_in		 ISO
IBA		 (PMID:19777273)
GO_REF:0000033		 RGD
GO_Central		 PMID:19777273 GO_REF:0000033 NCBI chr16:2,662,125...2,694,031 JBrowse link
G Cdh23 cadherin-related 23 located_in IEA
ISO		 GO_REF:0000107
(PMID:14578428)		 Ensembl
RGD		 PMID:14578428 GO_REF:0000107 NCBI chr20:28,783,124...29,165,624 JBrowse link
G Cep250 centrosomal protein 250 located_in ISO (PMID:30998843) RGD PMID:30998843 NCBI chr 3:144,470,946...144,516,125 JBrowse link
G Cerkl CERK like autophagy regulator located_in ISO (PMID:23142158) RGD PMID:23142158 NCBI chr 3:84,641,121...84,747,999 JBrowse link
G Cfap418 cilia and flagella associated protein 418 located_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:29440555)
GO_REF:0000044		 UniProt
RGD		 PMID:29440555 GO_REF:0000024 GO_REF:0000044 NCBI chr 5:23,996,395...24,015,609 JBrowse link
G Cib2 calcium and integrin binding family member 2 located_in ISS
ISO		 GO_REF:0000024
(PMID:23023331)		 UniProt
RGD		 PMID:23023331 GO_REF:0000024 NCBI chr 8:54,930,265...54,947,157 JBrowse link
G Crb1 crumbs cell polarity complex component 1 IDA RGD PMID:25878282 RGD:13451131 NCBI chr13:53,352,932...53,540,019 JBrowse link
G Crocc ciliary rootlet coiled-coil, rootletin located_in ISO (PMID:23178122) RGD PMID:23178122 NCBI chr 5:153,320,962...153,363,734 JBrowse link
G Dnm1 dynamin 1 located_in IEA
ISO		 GO_REF:0000107
(PMID:23746204)		 Ensembl
RGD		 PMID:23746204 GO_REF:0000107 NCBI chr 3:36,002,535...36,055,220 JBrowse link
G Dnm2 dynamin 2 located_in ISO (PMID:23746204) RGD PMID:23746204 NCBI chr 8:28,254,344...28,336,297 JBrowse link
G Dnm3 dynamin 3 located_in ISO (PMID:23746204) RGD PMID:23746204 NCBI chr13:76,892,381...77,371,346 JBrowse link
G Dram2 DNA damage regulated autophagy modulator 2 located_in ISS
ISO		 GO_REF:0000024
(PMID:25983245)		 UniProt
RGD		 PMID:25983245 GO_REF:0000024 NCBI chr 2:194,035,624...194,064,415 JBrowse link
G Dynlt1 dynein light chain Tctex-type 1 located_in ISO (PMID:10399916) RGD PMID:10399916 NCBI chr 1:49,292,093...49,299,051 JBrowse link
G Eno2 enolase 2 located_in IEA
ISO		 GO_REF:0000107
(PMID:9364238)		 Ensembl
RGD		 PMID:9364238 GO_REF:0000107 NCBI chr 4:159,258,371...159,267,220 JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr13:30,670,792...30,770,213 JBrowse link
G Fam161a FAM161 centrosomal protein A located_in ISO
IEA		 (PMID:22791751)
GO_REF:0000107		 RGD
Ensembl		 PMID:22791751 GO_REF:0000107 NCBI chr14:97,009,449...97,027,865 JBrowse link
G Gnat1 G protein subunit alpha transducin 1 located_in IDA
ISO		 (PMID:31696965)
(PMID:2534964)		 RGD PMID:2534964 PMID:31696965 PMID:11931744 RGD:1599009 NCBI chr 8:108,350,935...108,355,671 JBrowse link
G Gnat2 G protein subunit alpha transducin 2 is_active_in
located_in		 IDA
IBA
ISO		 GO_REF:0000033
(PMID:2534964)		 GO_Central
RGD		 PMID:2534964 PMID:17591908 GO_REF:0000033, RGD:2302146 NCBI chr 2:195,726,371...195,735,866 JBrowse link
G Gnb1 G protein subunit beta 1 IDA RGD PMID:11931744 RGD:1599009 NCBI chr 5:171,357,778...171,424,489 JBrowse link
G Gngt1 G protein subunit gamma transducin 1 IDA RGD PMID:11931744 RGD:1599009 NCBI chr 4:32,006,267...32,009,252 JBrowse link
G Guca1a guanylate cyclase activator 1A located_in
is_active_in		 IDA
ISO
IBA		 (PMID:9620085)
GO_REF:0000033		 RGD
GO_Central		 PMID:9620085 PMID:9620085 GO_REF:0000033, RGD:1599354 NCBI chr 9:13,588,988...13,598,566 JBrowse link
G Guca1b guanylate cyclase activator 1B is_active_in
located_in		 IDA
IBA
ISO		 GO_REF:0000033
(PMID:9620085)		 GO_Central
RGD		 PMID:9620085 PMID:9620085 GO_REF:0000033, RGD:1599354 NCBI chr 9:13,599,619...13,607,455 JBrowse link
G Guk1 guanylate kinase 1 located_in ISO (PMID:29515371) RGD PMID:29515371 NCBI chr10:44,471,075...44,488,332 JBrowse link
G Hkdc1 hexokinase domain containing 1 located_in ISO (PMID:30085091) RGD PMID:30085091 NCBI chr20:30,878,037...30,917,044 JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 IDA RGD PMID:10549657 RGD:10059381 NCBI chr 8:50,080,514...50,084,376 JBrowse link
G Impg1 interphotoreceptor matrix proteoglycan 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:81,243,624...81,389,722 JBrowse link
G Impg2 interphotoreceptor matrix proteoglycan 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr11:44,318,836...44,418,382 JBrowse link
G Inha inhibin subunit alpha IDA RGD PMID:7596220 RGD:2290440 NCBI chr 9:84,443,109...84,446,010 JBrowse link
G Kif17 kinesin family member 17 located_in ISO (PMID:19384852) RGD PMID:19384852 NCBI chr 5:150,482,288...150,521,471 JBrowse link
G Kifap3 kinesin-associated protein 3 located_in ISO (PMID:19384852) RGD PMID:19384852 NCBI chr13:76,127,702...76,264,654 JBrowse link
G Magi2 membrane associated guanylate kinase, WW and PDZ domain containing 2 located_in ISS
ISO		 GO_REF:0000024
(PMID:24608321)		 UniProt
RGD		 PMID:24608321 GO_REF:0000024 NCBI chr 4:14,386,389...15,870,036 JBrowse link
G Mak male germ cell-associated kinase located_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:21825139)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:21825139 GO_REF:0000024 GO_REF:0000107 NCBI chr17:23,889,417...23,936,857 JBrowse link
G Myo3a myosin IIIA is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:19332056)		 GO_Central
RGD		 PMID:19332056 GO_REF:0000033 NCBI chr17:89,451,567...89,667,654 JBrowse link
G Myo3b myosin IIIB is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:19332056)		 GO_Central
RGD		 PMID:19332056 GO_REF:0000033 NCBI chr 3:75,228,017...75,636,272 JBrowse link
G Myo7a myosin VIIA located_in
NOT|located_in		 ISO (PMID:8842737) RGD PMID:8842737 NCBI chr 1:152,342,611...152,414,171 JBrowse link
G Nos1 nitric oxide synthase 1 located_in IDA PMID:17027776 BHF-UCL PMID:17027776 RGD:8554510 NCBI chr12:44,276,011...44,456,371 JBrowse link
G Opn1sw opsin 1, short wave sensitive located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 4:58,942,685...58,945,825 JBrowse link
G Pcare photoreceptor cilium actin regulator is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:25616964)		 GO_Central
RGD		 PMID:25616964 GO_REF:0000033 NCBI chr 6:23,749,700...23,758,424 JBrowse link
G Pdc phosducin located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr13:62,297,281...62,371,754 JBrowse link
G Phlpp2 PH domain and leucine rich repeat protein phosphatase 2 IDA RGD PMID:20089132 RGD:5131540 NCBI chr19:37,835,125...37,901,804 JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr17:86,405,080...86,576,597 JBrowse link
G Prph2 peripherin 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 9:14,066,149...14,081,454 JBrowse link
G Rapgef4 Rap guanine nucleotide exchange factor 4 IDA RGD PMID:19883736 RGD:2314691 NCBI chr 3:56,809,388...57,101,332 JBrowse link
G Rd3 RD3 regulator of GUCY2D located_in ISO (PMID:21078983), (PMID:29515371) RGD PMID:21078983 PMID:29515371 NCBI chr13:103,551,823...103,562,925 JBrowse link
G Rdh11 retinol dehydrogenase 11 located_in ISO (PMID:15790565) RGD PMID:15790565 NCBI chr 6:97,979,377...97,995,252 JBrowse link
G Rdh12 retinol dehydrogenase 12 located_in ISO (PMID:12226107) RGD PMID:12226107 NCBI chr 6:103,748,457...103,761,379 JBrowse link
G Reep6 receptor accessory protein 6 located_in ISS
ISO		 GO_REF:0000024
(PMID:27889058)		 UniProt
RGD		 PMID:27889058 GO_REF:0000024 NCBI chr 7:9,373,927...9,380,845 JBrowse link
G Rho rhodopsin located_in ISO (PMID:11767049)
(PMID:10399916)		 RGD PMID:10399916 PMID:11767049 NCBI chr 4:148,975,597...148,988,693 JBrowse link
G Rp1 RP1, axonemal microtubule associated located_in ISO (PMID:11773008) RGD PMID:11773008 NCBI chr 5:15,121,104...15,582,363 JBrowse link
G Rs1 retinoschisin 1 located_in ISO (PMID:21196491) RGD PMID:21196491 NCBI chr  X:37,771,135...37,800,894 JBrowse link
G Sag S-antigen visual arrestin is_active_in
located_in		 IDA
IBA
ISO
IEA		 GO_REF:0000033
(PMID:22869374)
GO_REF:0000107		 GO_Central
RGD
Ensembl		 PMID:22869374 PMID:10396627 GO_REF:0000033 GO_REF:0000107, RGD:6893629 NCBI chr 9:95,915,640...95,956,641 JBrowse link
G Shank2 SH3 and multiple ankyrin repeat domains 2 located_in ISS
ISO		 GO_REF:0000024
(PMID:19299912)		 BHF-UCL
RGD		 PMID:19299912 GO_REF:0000024 NCBI chr 1:208,575,144...209,020,300 JBrowse link
G Slc2a1 solute carrier family 2 member 1 located_in IEA
ISO		 GO_REF:0000044
(PMID:25957687)		 UniProt
RGD		 PMID:25957687 GO_REF:0000044 NCBI chr 5:138,002,522...138,030,742 JBrowse link
G Snap25 synaptosome associated protein 25 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:144,494,579...144,576,449 JBrowse link
G Stx3 syntaxin 3 located_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:33974130)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:33974130 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:208,617,018...208,686,240 JBrowse link
G Tmem30a transmembrane protein 30A located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:80,728,749...80,757,197 JBrowse link
G Tulp1 TUB like protein 1 located_in ISO (PMID:10549638), (PMID:11481257), (PMID:17525220), (PMID:19218615) RGD PMID:10549638 PMID:11481257 PMID:17525220 PMID:19218615 NCBI chr20:6,412,170...6,424,103 JBrowse link
G Ush1c USH1 protein network component harmonin located_in
is_active_in		 IDA
ISO
IBA		 (PMID:14578428), (PMID:17906286)
GO_REF:0000033		 RGD
GO_Central		 PMID:14578428 PMID:17906286 PMID:14578428 GO_REF:0000033, RGD:1303964 NCBI chr 1:96,695,303...96,743,671 JBrowse link
G Ush1g USH1 protein network component sans located_in ISO (PMID:24608321)
(PMID:17906286)		 RGD PMID:17906286 PMID:24608321 NCBI chr10:100,559,721...100,563,590 JBrowse link
G Ush2a usherin located_in IDA
ISO
IEA		 (PMID:21212183)
GO_REF:0000107		 RGD
Ensembl		 PMID:21212183 PMID:16434480 GO_REF:0000107, RGD:1600128 NCBI chr13:102,368,783...103,035,230 JBrowse link
G Usp45 ubiquitin specific peptidase 45 located_in ISO (PMID:30573563) RGD PMID:30573563 NCBI chr 5:35,318,621...35,392,090 JBrowse link
G Whrn whirlin located_in IDA
ISO
IEA		 (PMID:17906286)
GO_REF:0000107		 RGD
Ensembl		 PMID:17906286 PMID:16434480 GO_REF:0000107, RGD:1600128 NCBI chr 5:76,828,308...76,911,945 JBrowse link
photoreceptor inner segment membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rho rhodopsin located_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:19934218)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:19934218 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:148,975,597...148,988,693 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21321
    cellular anatomical structure 21026
      photoreceptor inner segment 69
        photoreceptor inner segment membrane 1
paths to the root