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ONTOLOGY REPORT - ANNOTATIONS


Term:photoreceptor inner segment
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Accession:GO:0001917 term browser browse the term
Definition:The inner segment of a vertebrate photoreceptor containing mitochondria, ribosomes and membranes where opsin molecules are assembled and passed to be part of the outer segment discs.



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photoreceptor inner segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aipl1 aryl hydrocarbon receptor-interacting protein-like 1 located_in ISO (MGI:3055312|PMID:14555765) RGD PMID:14555765 MGI:3055312 NCBI chr10:56,655,693...56,664,922
Ensembl chr10:56,655,693...56,664,922
JBrowse link
G Arr3 arrestin 3 located_in ISO
IEA
(PMID:23704327)
GO_REF:0000107
RGD
Ensembl
PMID:23704327 GO_REF:0000107 NCBI chr  X:65,699,881...65,712,224
Ensembl chr  X:65,698,699...65,712,153
JBrowse link
G Asrgl1 asparaginase and isoaspartyl peptidase 1 located_in ISO
ISS
(MGI:6244785|PMID:27106100)
GO_REF:0000024
RGD
UniProt
PMID:27106100 GO_REF:0000024 MGI:6244785 NCBI chr 1:206,006,103...206,027,115
Ensembl chr 1:206,006,109...206,027,108
JBrowse link
G Atp1a3 ATPase Na+/K+ transporting subunit alpha 3 located_in ISO (MGI:4939095|PMID:21196491) RGD PMID:21196491 MGI:4939095 NCBI chr 1:80,572,790...80,601,936
Ensembl chr 1:80,572,796...80,601,918
JBrowse link
G Atp1b2 ATPase Na+/K+ transporting subunit beta 2 located_in IEA
ISO
GO_REF:0000107
(MGI:4939095|PMID:21196491)
Ensembl
RGD
PMID:21196491 GO_REF:0000107 MGI:4939095 NCBI chr10:54,318,698...54,324,933
Ensembl chr10:54,318,701...54,324,933
JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 located_in ISO (MGI:3808975|PMID:18022666) RGD PMID:18022666 MGI:3808975 NCBI chr 8:59,731,912...59,765,408
Ensembl chr 8:59,731,912...59,765,607
JBrowse link
G Bsg basigin (Ok blood group) located_in ISS
ISO
GO_REF:0000024
(MGI:3610672|PMID:11853760), (MGI:6436439|PMID:25957687)
UniProt
RGD
PMID:11853760 PMID:25957687 GO_REF:0000024 MGI:3610672 MGI:6436439 NCBI chr 7:9,993,170...10,000,387
Ensembl chr 7:9,993,170...10,000,387
JBrowse link
G Ccdc66 coiled-coil domain containing 66 located_in
is_active_in
ISO
IBA
(PMID:19777273)
PMID:21873635
(MGI:6158981|PMID:19777273)
RGD PMID:19777273 PMID:21873635 MGI:6158981, RGD:13792537 NCBI chr16:2,662,125...2,694,031
Ensembl chr16:2,662,131...2,694,023
JBrowse link
G Cdh23 cadherin-related 23 located_in IEA
ISO
GO_REF:0000107
(MGI:2679149|PMID:14578428)
Ensembl
RGD
PMID:14578428 GO_REF:0000107 MGI:2679149 NCBI chr20:28,240,643...28,622,490
Ensembl chr20:28,240,645...28,622,419
JBrowse link
G Cep250 centrosomal protein 250 located_in ISO (MGI:6317055|PMID:30998843) RGD PMID:30998843 MGI:6317055 NCBI chr 3:144,470,946...144,516,125
Ensembl chr 3:144,471,214...144,516,125
JBrowse link
G Cerkl ceramide kinase-like located_in ISO (MGI:5571037|PMID:23142158) RGD PMID:23142158 MGI:5571037 NCBI chr 3:64,238,714...64,344,695
Ensembl chr 3:64,237,522...64,340,675
JBrowse link
G Cfap418 cilia and flagella associated protein 418 located_in ISS
ISO
GO_REF:0000024
(MGI:6148650|PMID:29440555)
UniProt
RGD
PMID:29440555 GO_REF:0000024 MGI:6148650 NCBI chr 5:23,996,395...24,015,609
Ensembl chr 5:23,996,718...24,015,605
JBrowse link
G Cib2 calcium and integrin binding family member 2 located_in ISS
ISO
GO_REF:0000024
(MGI:5487486|PMID:23023331)
UniProt
RGD
PMID:23023331 GO_REF:0000024 MGI:5487486 NCBI chr 8:54,930,265...54,947,157 JBrowse link
G Crb1 crumbs cell polarity complex component 1 IDA RGD PMID:25878282 RGD:13451131 NCBI chr13:50,801,484...50,989,261
Ensembl chr13:50,800,959...50,989,261
JBrowse link
G Crocc ciliary rootlet coiled-coil, rootletin located_in ISO (MGI:5467890|PMID:23178122) RGD PMID:23178122 MGI:5467890 NCBI chr 5:153,320,962...153,363,734
Ensembl chr 5:153,320,962...153,363,578
JBrowse link
G Dnm1 dynamin 1 located_in ISO (MGI:5587953|PMID:23746204)
(MGI:3717940|PMID:17525220)
RGD PMID:17525220 PMID:23746204 MGI:3717940 MGI:5587953 NCBI chr 3:15,604,782...15,648,654
Ensembl chr 3:15,604,784...15,648,538
JBrowse link
G Dnm2 dynamin 2 located_in ISO (MGI:5587953|PMID:23746204) RGD PMID:23746204 MGI:5587953 NCBI chr 8:19,978,313...20,060,162
Ensembl chr 8:19,978,400...20,060,157
JBrowse link
G Dnm3 dynamin 3 located_in ISO (MGI:5587953|PMID:23746204) RGD PMID:23746204 MGI:5587953 NCBI chr13:74,359,043...74,838,135
Ensembl chr13:74,359,213...74,838,108
JBrowse link
G Dram2 DNA damage regulated autophagy modulator 2 located_in ISS
ISO
GO_REF:0000024
(MGI:5705208|PMID:25983245)
UniProt
RGD
PMID:25983245 GO_REF:0000024 MGI:5705208 NCBI chr 2:194,035,624...194,064,415
Ensembl chr 2:194,035,818...194,063,403
JBrowse link
G Eno2 enolase 2 located_in ISO (MGI:1099351|PMID:9364238) RGD PMID:9364238 MGI:1099351 NCBI chr 4:157,572,085...157,580,971
Ensembl chr 4:157,572,088...157,580,980
JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr13:30,673,052...30,770,213
Ensembl chr13:30,669,764...30,768,360
JBrowse link
G Fam161a FAM161 centrosomal protein A located_in ISO (PMID:22791751)
(MGI:5438885|PMID:22791751)
RGD PMID:22791751 MGI:5438885 NCBI chr14:97,009,449...97,027,865
Ensembl chr14:97,009,491...97,028,588
JBrowse link
G Gnat1 G protein subunit alpha transducin 1 located_in IDA
ISO
(MGI:6383261|PMID:31696965)
(PMID:2534964)
RGD PMID:2534964 PMID:31696965 PMID:11931744 MGI:6383261, RGD:1599009 NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671
JBrowse link
G Gnat2 G protein subunit alpha transducin 2 is_active_in
located_in
IDA
IBA
ISO
PMID:21873635
(PMID:2534964)
RGD PMID:2534964 PMID:17591908 PMID:21873635 RGD:2302146, RGD:13792537 NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866
JBrowse link
G Gnat3 G protein subunit alpha transducin 3 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:17,162,500...17,212,283
Ensembl chr 4:17,162,490...17,212,283
JBrowse link
G Gnb1 G protein subunit beta 1 IDA RGD PMID:11931744 RGD:1599009 NCBI chr 5:166,075,508...166,142,223
Ensembl chr 5:166,075,629...166,142,124
JBrowse link
G Gnb5 G protein subunit beta 5 located_in ISO (MGI:5507748|PMID:23555598) RGD PMID:23555598 MGI:5507748 NCBI chr 8:76,076,227...76,104,151
Ensembl chr 8:76,073,306...76,105,069
JBrowse link
G Gngt1 G protein subunit gamma transducin 1 IDA RGD PMID:11931744 RGD:1599009 NCBI chr 4:32,006,267...32,009,252
Ensembl chr 4:32,006,267...32,009,252
JBrowse link
G Guca1a guanylate cyclase activator 1A located_in IDA
ISO
(MGI:6437034|PMID:9620085)
(PMID:9620085)
RGD PMID:9620085 PMID:9620085 MGI:6437034, RGD:1599354 NCBI chr 9:13,587,695...13,598,566
Ensembl chr 9:13,588,525...13,598,565
JBrowse link
G Guca1b guanylate cyclase activator 1B is_active_in
located_in
IDA
IBA
ISO
PMID:21873635
(PMID:9620085)
RGD PMID:9620085 PMID:9620085 PMID:21873635 RGD:1599354, RGD:13792537 NCBI chr 9:13,599,619...13,607,455
Ensembl chr 9:13,599,619...13,607,455
JBrowse link
G Guk1 guanylate kinase 1 located_in ISO (MGI:6368063|PMID:29515371) RGD PMID:29515371 MGI:6368063 NCBI chr10:43,971,514...43,988,658
Ensembl chr10:43,971,509...43,980,107
JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 IDA RGD PMID:10549657 RGD:10059381 NCBI chr 8:41,183,397...41,187,260
Ensembl chr 8:41,183,264...41,187,259
JBrowse link
G Impg1 interphotoreceptor matrix proteoglycan 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:81,243,624...81,389,722
Ensembl chr 8:81,243,624...81,389,722
JBrowse link
G Inha inhibin subunit alpha IDA RGD PMID:7596220 RGD:2290440 NCBI chr 9:76,994,465...76,997,366
Ensembl chr 9:76,993,589...76,997,248
JBrowse link
G Kif17 kinesin family member 17 located_in ISO
IEA
(MGI:4353477|PMID:19384852)
GO_REF:0000107
RGD
Ensembl
PMID:19384852 GO_REF:0000107 MGI:4353477 NCBI chr 5:150,482,288...150,521,471
Ensembl chr 5:150,481,578...150,519,638
JBrowse link
G Kifap3 kinesin-associated protein 3 located_in ISO
IEA
(MGI:4353477|PMID:19384852)
GO_REF:0000107
RGD
Ensembl
PMID:19384852 GO_REF:0000107 MGI:4353477 NCBI chr13:76,127,702...76,264,654
Ensembl chr13:76,127,696...76,264,650
JBrowse link
G Magi2 membrane associated guanylate kinase, WW and PDZ domain containing 2 located_in ISS
ISO
GO_REF:0000024
(MGI:5573004|PMID:24608321)
UniProt
RGD
PMID:24608321 GO_REF:0000024 MGI:5573004 NCBI chr 4:14,388,322...15,870,036
Ensembl chr 4:14,386,399...15,870,240
JBrowse link
G Mak male germ cell-associated kinase located_in ISS
ISO
GO_REF:0000024
(PMID:21825139)
UniProt
RGD
PMID:21825139 GO_REF:0000024 NCBI chr17:23,683,674...23,731,125
Ensembl chr17:23,693,878...23,730,001
JBrowse link
G Myo3a myosin IIIA located_in
is_active_in
ISO
IBA
(MGI:4352610|PMID:19332056)
PMID:21873635
RGD PMID:19332056 PMID:21873635 MGI:4352610, RGD:13792537 NCBI chr17:84,554,785...84,604,748
Ensembl chr17:84,543,552...84,759,042
JBrowse link
G Myo3b myosin IIIB located_in
is_active_in
ISO
IBA
(MGI:4352610|PMID:19332056)
PMID:21873635
RGD PMID:19332056 PMID:21873635 MGI:4352610, RGD:13792537 NCBI chr 3:54,873,704...55,226,189
Ensembl chr 3:54,820,251...55,227,373
JBrowse link
G Myo7a myosin VIIA located_in
NOT|located_in
ISO (PMID:8842737)
(MGI:81971|PMID:8842737)
RGD PMID:8842737 MGI:81971 NCBI chr 1:152,342,611...152,414,171
Ensembl chr 1:152,344,448...152,414,157
JBrowse link
G Nos1 nitric oxide synthase 1 located_in IDA PMID:17027776 BHF-UCL PMID:17027776 RGD:8554510 NCBI chr12:38,615,111...38,795,492
Ensembl chr12:38,626,714...38,710,945
JBrowse link
G Opn1sw opsin 1, short wave sensitive located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 4:57,977,317...57,980,457
Ensembl chr 4:57,977,313...57,980,457
JBrowse link
G Pcare photoreceptor cilium actin regulator located_in
is_active_in
ISO
IBA
(MGI:5636574|PMID:25616964)
PMID:21873635
RGD PMID:25616964 PMID:21873635 MGI:5636574, RGD:13792537 NCBI chr 6:23,749,700...23,758,419
Ensembl chr 6:23,749,757...23,758,169
JBrowse link
G Pdc phosducin located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr13:62,297,281...62,371,754
Ensembl chr13:62,358,196...62,371,754
JBrowse link
G Phlpp2 PH domain and leucine rich repeat protein phosphatase 2 IDA RGD PMID:20089132 RGD:5131540 NCBI chr19:37,835,125...37,901,804
Ensembl chr19:37,835,125...37,905,513
JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr17:81,496,669...81,668,180
Ensembl chr17:81,496,670...81,668,029
JBrowse link
G Pkm pyruvate kinase M1/2 located_in ISO (MGI:6112970|PMID:26780311) RGD PMID:26780311 MGI:6112970 NCBI chr 8:60,057,629...60,079,600
Ensembl chr 8:60,057,402...60,079,599
JBrowse link
G Prph2 peripherin 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 9:14,066,149...14,081,454
Ensembl chr 9:14,066,156...14,081,454
JBrowse link
G Rapgef4 Rap guanine nucleotide exchange factor 4 IDA RGD PMID:19883736 RGD:2314691 NCBI chr 3:56,809,388...57,101,332
Ensembl chr 3:56,809,270...57,102,316
JBrowse link
G Rd3 RD3 regulator of GUCY2D located_in ISO (MGI:4867355|PMID:21078983), (MGI:6368063|PMID:29515371) RGD PMID:21078983 PMID:29515371 MGI:4867355 MGI:6368063 NCBI chr13:103,551,823...103,562,925
Ensembl chr13:103,552,857...103,562,622
JBrowse link
G Rdh11 retinol dehydrogenase 11 located_in ISO (MGI:3584215|PMID:15790565) RGD PMID:15790565 MGI:3584215 NCBI chr 6:97,979,377...97,995,252
Ensembl chr 6:97,979,378...97,995,252
JBrowse link
G Rdh12 retinol dehydrogenase 12 located_in ISO (MGI:6271140|PMID:12226107) RGD PMID:12226107 MGI:6271140 NCBI chr 6:98,015,465...98,028,388
Ensembl chr 6:98,015,465...98,028,388
JBrowse link
G Reep6 receptor accessory protein 6 located_in ISS
ISO
GO_REF:0000024
(PMID:27889058)
UniProt
RGD
PMID:27889058 GO_REF:0000024 NCBI chr 7:9,373,927...9,380,845
Ensembl chr 7:9,373,927...9,380,597
JBrowse link
G Rgs9 regulator of G-protein signaling 9 located_in ISO (MGI:5507748|PMID:23555598) RGD PMID:23555598 MGI:5507748 NCBI chr10:94,195,265...94,270,892
Ensembl chr10:94,197,054...94,270,892
JBrowse link
G Rho rhodopsin located_in ISO (MGI:4456964|PMID:10399916)
(PMID:11767049)
RGD PMID:10399916 PMID:11767049 MGI:4456964 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
JBrowse link
G Rp1 RP1, axonemal microtubule associated located_in ISO (PMID:11773008)
(MGI:2156902|PMID:11773008)
RGD PMID:11773008 MGI:2156902 NCBI chr 5:15,121,104...15,582,363
Ensembl chr 5:15,121,133...15,579,363
JBrowse link
G Rs1 retinoschisin 1 located_in ISO (MGI:4939095|PMID:21196491) RGD PMID:21196491 MGI:4939095 NCBI chr  X:33,963,657...33,992,115
Ensembl chr  X:33,963,657...33,992,115
JBrowse link
G Sag S-antigen visual arrestin is_active_in
located_in
IDA
IBA
ISO
IEA
PMID:21873635
(MGI:5462139|PMID:22869374)
GO_REF:0000107
RGD
Ensembl
PMID:22869374 PMID:10396627 PMID:21873635 GO_REF:0000107 MGI:5462139, RGD:6893629, RGD:13792537 NCBI chr 9:88,467,797...88,508,821
Ensembl chr 9:88,469,376...88,508,820
JBrowse link
G Shank2 SH3 and multiple ankyrin repeat domains 2 part_of
located_in
ISO
ISS
(MGI:5306573|PMID:19299912)
GO_REF:0000024
RGD
BHF-UCL
PMID:19299912 GO_REF:0000024 MGI:5306573 NCBI chr 1:199,146,210...199,590,962
Ensembl chr 1:199,169,429...199,589,394
JBrowse link
G Slc2a1 solute carrier family 2 member 1 located_in IEA
ISO
GO_REF:0000044
(MGI:6436439|PMID:25957687)
UniProt
RGD
PMID:25957687 GO_REF:0000044 MGI:6436439 NCBI chr 5:132,717,196...132,745,416
Ensembl chr 5:132,717,196...132,745,416
JBrowse link
G Snap25 synaptosome associated protein 25 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:124,041,898...124,123,761
Ensembl chr 3:124,041,898...124,123,760
JBrowse link
G Stx3 syntaxin 3 located_in ISS
ISO
GO_REF:0000024
(MGI:7258358|PMID:33974130)
UniProt
RGD
PMID:33974130 GO_REF:0000024 MGI:7258358 NCBI chr 1:208,617,018...208,686,240
Ensembl chr 1:208,639,115...208,685,805
JBrowse link
G Tmem30a transmembrane protein 30A located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:80,728,749...80,757,197
Ensembl chr 8:80,729,619...80,753,248
JBrowse link
G Tulp1 TUB like protein 1 located_in ISO (MGI:2138027|PMID:11481257), (MGI:2388540|PMID:10549638), (MGI:3717940|PMID:17525220), (MGI:4397555|PMID:19218615) RGD PMID:10549638 PMID:11481257 PMID:17525220 PMID:19218615 MGI:2138027 MGI:2388540 MGI:3717940 MGI:4397555 NCBI chr20:6,412,170...6,424,312
Ensembl chr20:6,412,171...6,424,073
JBrowse link
G Ush1c USH1 protein network component harmonin is_active_in
located_in
IDA
IBA
ISO
PMID:21873635
(MGI:2679149|PMID:14578428), (MGI:3774983|PMID:17906286)
RGD PMID:14578428 PMID:17906286 PMID:14578428 PMID:21873635 MGI:2679149 MGI:3774983, RGD:1303964, RGD:13792537 NCBI chr 1:96,695,303...96,743,671
Ensembl chr 1:96,695,307...96,743,671
JBrowse link
G Ush1g USH1 protein network component sans located_in ISO (MGI:3774983|PMID:17906286)
(PMID:24608321)
RGD PMID:17906286 PMID:24608321 MGI:3774983 NCBI chr10:100,559,721...100,563,590
Ensembl chr10:100,557,629...100,563,590
JBrowse link
G Ush2a usherin colocalizes_with
located_in
IDA
IEA
ISO
GO_REF:0000107
(MGI:4950337|PMID:21212183)
Ensembl
RGD
PMID:21212183 PMID:16434480 GO_REF:0000107 MGI:4950337, RGD:1600128 NCBI chr13:99,837,445...100,503,935
Ensembl chr13:99,837,445...100,503,922
JBrowse link
G Usp45 ubiquitin specific peptidase 45 located_in ISO (PMID:30573563) RGD PMID:30573563 NCBI chr 5:35,318,621...35,392,090
Ensembl chr 5:35,318,635...35,389,420
JBrowse link
G Whrn whirlin colocalizes_with
located_in
IDA
IBA
ISO
IEA
PMID:21873635
(MGI:3774983|PMID:17906286)
GO_REF:0000107
RGD
Ensembl
PMID:17906286 PMID:16434480 PMID:21873635 GO_REF:0000107 MGI:3774983, RGD:1600128, RGD:13792537 NCBI chr 5:76,828,308...76,911,945
Ensembl chr 5:76,828,301...76,912,223
JBrowse link
photoreceptor inner segment membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rho rhodopsin located_in ISS
ISO
IEA
GO_REF:0000024
(PMID:19934218)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:19934218 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19187
    cellular anatomical entity 18928
      photoreceptor inner segment 70
        photoreceptor inner segment membrane 1
paths to the root