Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of synaptic vesicle endocytosis
go back to main search page
Accession:GO:1900242 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of synaptic vesicle endocytosis.
Synonyms:related_synonym: regulation of synaptic vesicle retrieval


show annotations for term's descendants           Sort by:
regulation of synaptic vesicle endocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actb actin, beta involved_in IEA
ISO		 GO_REF:0000107
(PMID:27840001)		 Ensembl
RGD		 PMID:27840001 GO_REF:0000107 NCBI chr12:11,663,112...11,666,697
Ensembl chr12:11,663,109...11,672,877 		JBrowse link
G Actg1 actin, gamma 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:27840001)		 Ensembl
RGD		 PMID:27840001 GO_REF:0000107 NCBI chr10:105,619,738...105,622,587
Ensembl chr10:105,619,737...105,624,232
Ensembl chr 3:105,619,737...105,624,232 		JBrowse link
G Actg1l1 actin, gamma 1 like 1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 3:72,977,767...72,979,691
Ensembl chr10:105,619,737...105,624,232
Ensembl chr 3:105,619,737...105,624,232
Ensembl chr 3:105,619,737...105,624,232 		JBrowse link
G Arpc3 actin related protein 2/3 complex, subunit 3 involved_in ISO (PMID:34269176) RGD PMID:34269176 NCBI chr12:34,172,780...34,186,651
Ensembl chr12:34,172,780...34,186,651 		JBrowse link
G Bcl2l1 Bcl2-like 1 involved_in IMP
IDA
IEP		 PMID:23792689 SynGO PMID:23792689 PMID:23792689 PMID:23792689 RGD:12793033, RGD:12793033, RGD:12793033 NCBI chr 3:141,253,508...141,304,582
Ensembl chr 3:141,253,523...141,303,479 		JBrowse link
G Btbd9 BTB domain containing 9 acts_upstream_of_or_within ISO MGI:4127237 (PMID:22536397) RGD PMID:22536397 NCBI chr20:8,286,337...8,645,567
Ensembl chr20:8,288,711...8,643,960 		JBrowse link
G Calm1 calmodulin 1 involved_in IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr 6:119,487,691...119,495,759
Ensembl chr 6:119,487,621...119,498,227 		JBrowse link
G Calm2 calmodulin 2 involved_in IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr 6:7,091,624...7,104,284
Ensembl chr 6:7,091,567...7,104,287
Ensembl chr15:7,091,567...7,104,287 		JBrowse link
G Calm3 calmodulin 3 involved_in IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr 1:77,590,668...77,597,776
Ensembl chr 1:77,589,230...77,592,207 		JBrowse link
G Cxadr CXADR, Ig-like cell adhesion molecule involved_in ISO (PMID:31043663) RGD PMID:31043663 NCBI chr11:16,982,864...17,030,078
Ensembl chr11:16,982,860...17,030,046 		JBrowse link
G Dgkq diacylglycerol kinase, theta involved_in ISO (PMID:26748701) RGD PMID:26748701 NCBI chr14:1,059,125...1,073,131
Ensembl chr14:1,059,170...1,073,131 		JBrowse link
G Dnm1 dynamin 1 IMP RGD PMID:16648848 RGD:13504740 NCBI chr 3:15,604,782...15,648,654
Ensembl chr 3:15,604,784...15,648,538 		JBrowse link
G Kcnc3 potassium voltage-gated channel subfamily C member 3 involved_in ISO (PMID:33508244) RGD PMID:33508244 NCBI chr 1:95,080,960...95,095,165
Ensembl chr 1:95,080,960...95,095,160 		JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 involved_in ISO
IBA		 (PMID:25501810)
GO_REF:0000033		 RGD
GO_Central		 PMID:25501810 GO_REF:0000033 NCBI chr 7:122,826,696...122,987,711
Ensembl chr 7:122,826,696...122,987,703 		JBrowse link
G Mylk myosin light chain kinase involved_in IDA
IMP
EXP		 PMID:27062289 SynGO PMID:27062289 PMID:27062289 PMID:27062289 RGD:405650266, RGD:405650266, RGD:405650266 NCBI chr11:65,783,008...66,030,239
Ensembl chr11:65,783,008...66,030,261 		JBrowse link
G Ophn1 oligophrenin 1 involved_in IDA
IMP		 PMID:19481455 SynGO PMID:19481455 PMID:19481455 RGD:155230799, RGD:155230799 NCBI chr  X:63,599,746...63,976,678
Ensembl chr  X:63,603,042...63,976,633 		JBrowse link
G Park7 Parkinsonism associated deglycase involved_in ISO (PMID:29386384) RGD PMID:29386384 NCBI chr 5:161,353,718...161,376,993
Ensembl chr 5:161,353,719...161,376,970 		JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein IMP RGD PMID:18842885 RGD:8554167 NCBI chr 1:144,056,415...144,138,045
Ensembl chr 1:144,056,721...144,137,557 		JBrowse link
G Pip5k1c phosphatidylinositol-4-phosphate 5-kinase type 1 gamma involved_in ISO (PMID:15386003) RGD PMID:15386003 NCBI chr 7:8,397,406...8,426,030
Ensembl chr 7:8,397,406...8,425,988 		JBrowse link
G Ppp3cb protein phosphatase 3 catalytic subunit beta involved_in IEA
ISO		 GO_REF:0000107
(PMID:20810903)		 Ensembl
RGD		 PMID:20810903 GO_REF:0000107 NCBI chr15:3,759,950...3,804,976
Ensembl chr15:3,760,030...3,804,981 		JBrowse link
G Ppp3cc protein phosphatase 3 catalytic subunit gamma involved_in IMP
IDA		 PMID:26627835 SynGO PMID:26627835 PMID:26627835 RGD:11532172, RGD:11532172 NCBI chr15:45,289,917...45,362,012
Ensembl chr15:45,290,373...45,361,832 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in IEA
ISO		 GO_REF:0000107
(PMID:29311685)		 Ensembl
RGD		 PMID:29311685 GO_REF:0000107 NCBI chr 1:48,688,651...49,882,520
Ensembl chr 1:48,690,556...49,882,555 		JBrowse link
G Rac1 Rac family small GTPase 1 involved_in ISO (PMID:34269176) RGD PMID:34269176 NCBI chr12:11,037,028...11,057,251
Ensembl chr12:11,036,698...11,057,251 		JBrowse link
G Rock1 Rho-associated coiled-coil containing protein kinase 1 involved_in IEA
ISO		 GO_REF:0000107
UniProtKB:O60890 (PMID:27160703)		 Ensembl
RGD		 PMID:27160703 GO_REF:0000107 NCBI chr18:1,114,532...1,236,345
Ensembl chr18:1,115,905...1,235,571 		JBrowse link
G Scamp5 secretory carrier membrane protein 5 involved_in IDA
IMP		 PMID:25057210 SynGO PMID:25057210 PMID:25057210 RGD:13702419, RGD:13702419 NCBI chr 8:57,845,831...57,884,516
Ensembl chr 8:57,846,659...57,872,027 		JBrowse link
G Sh3gl1 SH3 domain containing GRB2 like 1, endophilin A2 IMP RGD PMID:22750032 RGD:13463484 NCBI chr 9:842,285...869,753
Ensembl chr 9:842,288...869,716 		JBrowse link
G Slc17a7 solute carrier family 17 member 7 IMP RGD PMID:16815333 RGD:13504741 NCBI chr 1:95,649,709...95,661,591
Ensembl chr 1:95,649,745...95,661,588 		JBrowse link
G Snap91 synaptosome associated protein 91 IMP RGD PMID:18842885 RGD:8554167 NCBI chr 8:87,738,056...87,852,690
Ensembl chr 8:87,738,824...87,852,367 		JBrowse link
G Snx9 sorting nexin 9 involved_in IDA
IMP		 PMID:17681954 SynGO PMID:17681954 PMID:17681954 RGD:155230781, RGD:155230781 NCBI chr 1:46,424,897...46,510,096
Ensembl chr 1:46,423,553...46,509,036 		JBrowse link
G Syt11 synaptotagmin 11 involved_in IEA
ISO		 GO_REF:0000107
(PMID:29311685)		 Ensembl
RGD		 PMID:29311685 GO_REF:0000107 NCBI chr 2:174,206,032...174,232,540
Ensembl chr 2:174,206,191...174,231,964 		JBrowse link
G Syt7 synaptotagmin 7 involved_in IDA
IMP		 PMID:14532108 SynGO PMID:14532108 PMID:14532108 RGD:155230716, RGD:155230716 NCBI chr 1:207,031,359...207,093,787
Ensembl chr 1:207,031,592...207,089,026 		JBrowse link
G Vamp4 vesicle-associated membrane protein 4 involved_in IDA
EXP
IMP		 PMID:26607000 SynGO PMID:26607000 PMID:26607000 PMID:26607000 RGD:11058152, RGD:11058152, RGD:11058152 NCBI chr13:74,919,872...74,942,791
Ensembl chr13:74,919,880...74,933,686 		JBrowse link
negative regulation of synaptic vesicle endocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Syt11 synaptotagmin 11 involved_in IMP PMID:26589353 ParkinsonsUK-UCL PMID:26589353 RGD:11079192 NCBI chr 2:174,206,032...174,232,540
Ensembl chr 2:174,206,191...174,231,964 		JBrowse link
positive regulation of synaptic vesicle endocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca13 ATP binding cassette subfamily A member 13 involved_in ISO (PMID:33478937) RGD PMID:33478937 NCBI chr14:83,873,397...84,376,138
Ensembl chr14:83,873,940...84,375,075 		JBrowse link
G Ap2m1 adaptor related protein complex 2 subunit mu 1 IMP RGD PMID:19762466 RGD:13461856 NCBI chr11:80,355,307...80,364,218
Ensembl chr11:80,328,041...80,364,140 		JBrowse link
G Bcl2l1 Bcl2-like 1 involved_in IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr 3:141,253,508...141,304,582
Ensembl chr 3:141,253,523...141,303,479 		JBrowse link
G Dnm1 dynamin 1 IMP RGD PMID:17437541 RGD:8554440 NCBI chr 3:15,604,782...15,648,654
Ensembl chr 3:15,604,784...15,648,538 		JBrowse link
G Dnm1l dynamin 1-like involved_in IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr11:84,581,216...84,632,382
Ensembl chr11:84,581,216...84,631,482 		JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 IMP RGD PMID:18445495 RGD:13462049 NCBI chr 7:122,826,696...122,987,711
Ensembl chr 7:122,826,696...122,987,703 		JBrowse link
G Mff mitochondrial fission factor involved_in IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr 9:84,007,798...84,036,039
Ensembl chr 9:84,007,798...84,036,039 		JBrowse link
G Nlgn1 neuroligin 1 involved_in IMP
ISO
IEA		 PMID:19628693
(PMID:19628693)
GO_REF:0000107		 RGD
Ensembl		 PMID:19628693 PMID:19628693 GO_REF:0000107, RGD:8554760 NCBI chr 2:108,256,236...109,181,530
Ensembl chr 2:108,257,824...109,002,464 		JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein IMP RGD PMID:21808019 RGD:13506237 NCBI chr 1:144,056,415...144,138,045
Ensembl chr 1:144,056,721...144,137,557 		JBrowse link
G Ppp3cc protein phosphatase 3 catalytic subunit gamma IMP RGD PMID:26627835 RGD:11532172 NCBI chr15:45,289,917...45,362,012
Ensembl chr15:45,290,373...45,361,832 		JBrowse link
G Sh3gl1 SH3 domain containing GRB2 like 1, endophilin A2 IMP RGD PMID:14532001 RGD:13464359 NCBI chr 9:842,285...869,753
Ensembl chr 9:842,288...869,716 		JBrowse link
G Snap91 synaptosome associated protein 91 IMP RGD PMID:21808019 RGD:13506237 NCBI chr 8:87,738,056...87,852,690
Ensembl chr 8:87,738,824...87,852,367 		JBrowse link
G Tor1a torsin family 1, member A involved_in ISS
ISO		 GO_REF:0000024
(PMID:21102408)		 UniProt
RGD		 PMID:21102408 GO_REF:0000024 NCBI chr 3:14,250,667...14,257,704
Ensembl chr 3:14,250,676...14,257,691 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20069
    cellular process 19150
      regulation of cellular process 12768
        regulation of vesicle-mediated transport 641
          regulation of endocytosis 364
            regulation of synaptic vesicle endocytosis 38
              negative regulation of synaptic vesicle endocytosis + 1
              positive regulation of synaptic vesicle endocytosis 13
Path 2
Term Annotations click to browse term
  biological_process 20069
    localization 5698
      establishment of localization 5001
        transport 4696
          vesicle-mediated transport 1632
            vesicle-mediated transport in synapse 331
              synaptic vesicle cycle 273
                synaptic vesicle recycling 105
                  synaptic vesicle endocytosis 91
                    regulation of synaptic vesicle endocytosis 38
                      negative regulation of synaptic vesicle endocytosis + 1
                      positive regulation of synaptic vesicle endocytosis 13
paths to the root