ONTOLOGY REPORT - ANNOTATIONS


Term:nuclear speck
go back to main search page
Accession:GO:0016607 term browser browse the term
Definition:A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy.
Synonyms:exact_synonym: nuclear speckle;   nuclear speckles;   splicing speckle
 narrow_synonym: speckle domain
 related_synonym: speckle focus


  • Rat
  • Mouse
  • Human
  • All
  • show annotations for term's descendants
  •     Sort by:
  • view all columns
nuclear speck term browser
Symbol Object Name GBrowse Chr Start Stop Reference
G Acin1 apoptotic chromatin condensation inducer 1 GBrowse link 15 32,719,863 32,764,748 RGD:1600115
RGD:1624291
G Aff2 AF4/FMR2 family, member 2 GBrowse link X 155,617,378 155,970,597 RGD:1624291
G Akap17a A kinase (PRKA) anchor protein 17A GBrowse link 12 16,818,052 16,822,097 RGD:1600115
RGD:1624291
G Alkbh5 AlkB family member 5, RNA demethylase GBrowse link 10 46,811,205 46,832,649 RGD:1600115
RGD:1624291
G Apbb1 amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65) GBrowse link 1 163,282,918 163,299,333 RGD:1600115
G Apex1 APEX nuclease (multifunctional DNA repair enzyme) 1 GBrowse link 15 26,904,124 26,906,224 RGD:1600115
RGD:1624291
G Arl6ip4 ADP-ribosylation factor-like 6 interacting protein 4 GBrowse link 12 33,603,784 33,605,929 RGD:1600115
G Atpaf2 ATP synthase mitochondrial F1 complex assembly factor 2 GBrowse link 10 46,668,951 46,684,301 RGD:1600115
RGD:1624291
G Atxn2l ataxin 2-like GBrowse link 1 185,637,263 185,647,581 RGD:1600115
RGD:1624291
G Basp1 brain abundant, membrane attached signal protein 1 GBrowse link 2 76,877,616 76,927,721 RGD:1600115
G Casc3 cancer susceptibility candidate 3 GBrowse link 10 87,581,850 87,602,528 RGD:1600115
G Cby1 chibby homolog 1 (Drosophila) GBrowse link 7 117,903,217 117,908,964 RGD:1600115
G Ccnl1 cyclin L1 GBrowse link 2 155,757,335 155,769,633 RGD:632453
G Ccnl2 cyclin L2 GBrowse link 5 172,666,512 172,673,024 RGD:1600115
G Cd2bp2 Cd2 (cytoplasmic tail) binding protein 2 GBrowse link 1 186,451,415 186,455,407 RGD:1600115
RGD:1624291
G Cdc5l cell division cycle 5-like GBrowse link 9 11,165,631 11,204,135 RGD:619664
RGD:1624291
G Cdk12 cyclin-dependent kinase 12 GBrowse link 10 86,972,428 87,027,794 RGD:1624291
RGD:8553775
G Cdk13 cyclin-dependent kinase 13 GBrowse link 17 55,146,130 55,235,545 RGD:1600115
RGD:1624291
G Cir1 corepressor interacting with RBPJ, 1 GBrowse link 3 55,789,080 55,818,634 RGD:1600115
G Csnk1a1 casein kinase 1, alpha 1 GBrowse link 18 57,541,673 57,564,560 RGD:1600115
RGD:1624291
G Cwc22 CWC22 spliceosome-associated protein GBrowse link 3 60,560,959 60,600,491 RGD:1624291
G Cxxc1 CXXC finger protein 1 GBrowse link 18 71,006,887 71,011,947 RGD:1600115
RGD:1624291
G Ddx39b DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B GBrowse link 20 3,611,128 3,623,578 RGD:1600115
G Ddx46 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 GBrowse link 17 14,985,633 15,029,607 RGD:1600115
G Dgkq diacylglycerol kinase, theta GBrowse link 14 1,600,280 1,614,154 RGD:1600115
RGD:1624291
G Dusp11 dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) GBrowse link 4 120,094,173 120,108,207 RGD:1600115
G Dyrk1a dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A GBrowse link 11 34,879,733 34,970,998 RGD:8554210
RGD:8554265
G Eaf2 ELL associated factor 2 GBrowse link 11 65,763,410 65,809,967 RGD:1600115
G Eftud2 elongation factor Tu GTP binding domain containing 2 GBrowse link 10 92,012,161 92,053,043 RGD:1600115
RGD:1624291
G Eif4a3 eukaryotic translation initiation factor 4A3 RGD:1600115
G Ell elongation factor RNA polymerase II GBrowse link 16 19,349,939 19,397,253 RGD:1600115
RGD:1624291
G Ep400 E1A binding protein p400 GBrowse link 12 46,036,453 46,143,426 RGD:1600115
RGD:1624291
G Fastk Fas-activated serine/threonine kinase GBrowse link 4 6,096,675 6,100,690 RGD:1624291
G Fto fat mass and obesity associated GBrowse link 19 16,514,746 16,858,800 RGD:1600115
RGD:1624291
G Fyttd1 forty-two-three domain containing 1 GBrowse link 11 69,700,526 69,720,622 RGD:1600115
RGD:1624291
G Gli2 GLI family zinc finger 2 GBrowse link 13 31,551,089 31,607,264 RGD:1600115
RGD:1624291
G Gli3 GLI family zinc finger 3 GBrowse link 17 57,594,102 57,867,710 RGD:1600115
RGD:1624291
RGD:2290270
G Glis2 GLIS family zinc finger 2 GBrowse link 10 11,080,702 11,100,905 RGD:1600115
RGD:1624291
G Hipk1 homeodomain interacting protein kinase 1 GBrowse link 2 198,963,076 199,014,710 RGD:1600115
RGD:1624291
G Hspa1a heat shock protein 1A GBrowse link 20 3,945,716 3,959,552 RGD:1600115
RGD:1624291
G Hspa1b heat shock protein 1B GBrowse link 20 3,955,274 3,957,748 RGD:1600115
RGD:1624291
G LOC100910172 brain acid soluble protein 1-like RGD:1600115
RGD:1624291
G LOC100910660 serine/arginine-rich splicing factor 3-like RGD:1600115
RGD:1624291
G LOC361990 similar to DKFZP547E1010 protein GBrowse link 2 182,772,001 182,783,476 RGD:1624291
G LOC687295 similar to translocase of inner mitochondrial membrane 50 homolog RGD:1600115
RGD:1624291
G Magoh mago-nashi homolog, proliferation-associated (Drosophila) GBrowse link 5 128,982,276 128,989,724 RGD:1600115
G Mbd1 methyl-CpG binding domain protein 1 GBrowse link 18 71,068,257 71,082,734 RGD:1600115
RGD:1624291
G Mecom MDS1 and EVI1 complex locus GBrowse link 2 114,814,409 114,882,676 RGD:1600115
RGD:1624291
G Mef2c myocyte enhancer factor 2C GBrowse link 2 12,331,078 12,346,520 RGD:1600115
RGD:1624291
G Meox2 mesenchyme homeobox 2 GBrowse link 6 55,895,760 55,957,066 RGD:1600115
G Mettl3 methyltransferase-like 3 GBrowse link 15 27,743,959 27,754,787 RGD:1624291
G Nek6 NIMA-related kinase 6 GBrowse link 3 18,348,698 18,381,895 RGD:1600115
G Noc3l nucleolar complex associated 3 homolog (S. cerevisiae) GBrowse link 1 243,108,787 243,137,316 RGD:1600115
RGD:1624291
G Nono non-POU domain containing, octamer-binding GBrowse link X 89,502,318 89,520,178 RGD:1600115
G Npm1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) GBrowse link 10 18,051,990 18,062,714 RGD:1624291
G Nrip1 nuclear receptor interacting protein 1 GBrowse link 11 15,066,443 15,150,137 RGD:1624291
G Nsrp1 nuclear speckle splicing regulatory protein 1 GBrowse link 10 67,078,478 67,112,148 RGD:1600115
RGD:1624291
G Nxf1 nuclear RNA export factor 1 GBrowse link 1 211,428,605 211,441,798 RGD:1600115
RGD:1624291
G Ogg1 8-oxoguanine DNA glycosylase GBrowse link 4 149,209,745 149,219,081 RGD:1600115
RGD:1624291
G Patl1 protein associated with topoisomerase II homolog 1 (yeast) GBrowse link 1 214,755,170 214,787,272 RGD:1600115
G Phf5a PHD finger protein 5A GBrowse link 7 120,216,581 120,223,146 RGD:1600115
RGD:1624291
G Pias2 protein inhibitor of activated STAT, 2 GBrowse link 18 74,078,683 74,123,668 RGD:1600115
G Pias3 protein inhibitor of activated STAT, 3 GBrowse link 2 191,499,057 191,507,221 RGD:1600115
G Pip5k1a phosphatidylinositol-4-phosphate 5-kinase, type 1, alpha GBrowse link 2 189,962,527 190,005,684 RGD:1600115
RGD:1624291
G Plcb1 phospholipase C, beta 1 (phosphoinositide-specific) GBrowse link 3 122,797,718 123,523,675 RGD:1600115
RGD:1624291
G Plrg1 pleiotropic regulator 1 GBrowse link 2 174,780,415 174,796,746 RGD:1600115
G Pnn pinin, desmosome associated protein GBrowse link 6 79,759,026 79,767,339 RGD:1600115
RGD:1624291
G Poldip3 polymerase (DNA-directed), delta interacting protein 3 GBrowse link 7 121,155,485 121,184,392 RGD:1600115
RGD:1624291
G Ppig peptidylprolyl isomerase G GBrowse link 3 51,866,989 51,895,893 RGD:1600115
G Ppih peptidylprolyl isomerase H (cyclophilin H) GBrowse link 5 139,959,365 139,969,320 RGD:1600115
RGD:1624291
G Ppp1cc protein phosphatase 1, catalytic subunit, gamma isozyme GBrowse link 12 35,580,169 35,598,249 RGD:1600115
G Ppp1r8 protein phosphatase 1, regulatory subunit 8 GBrowse link 5 152,305,936 152,323,075 RGD:1600115
RGD:1624291
G Pqbp1 polyglutamine binding protein 1 GBrowse link X 26,638,460 26,642,640 RGD:1600115
RGD:1624291
G Prpf18 pre-mRNA processing factor 18 GBrowse link 17 84,741,279 84,773,449 RGD:1600115
G Prpf19 pre-mRNA processing factor 19 GBrowse link 1 213,390,564 213,401,943 RGD:1600115
RGD:1624291
G Prpf31 pre-mRNA processing factor 31 GBrowse link 1 63,888,815 63,900,490 RGD:1600115
RGD:1624291
G Prpf6 pre-mRNA processing factor 6 GBrowse link 3 170,740,406 170,804,674 RGD:1600115
G Pspc1 paraspeckle component 1 GBrowse link 15 35,718,357 35,779,139 RGD:1600115
G Rbm11 RNA binding motif protein 11 GBrowse link 11 14,381,923 14,391,904 RGD:1624291
G Rbm25 RNA binding motif protein 25 GBrowse link 6 107,586,845 107,721,684 RGD:1624291
G Rbm4 RNA binding motif protein 4 GBrowse link 1 207,394,470 207,403,393 RGD:1624291
G Rbm8a RNA binding motif protein 8A GBrowse link 2 191,429,805 191,432,261 RGD:1600115
G Ring1 ring finger protein 1 GBrowse link 20 4,968,251 4,972,149 RGD:1600115
G Rnf34 ring finger protein 34, E3 ubiquitin protein ligase GBrowse link 12 34,805,137 34,826,016 RGD:1600115
G Rnps1 ribonucleic acid binding protein S1 GBrowse link 10 13,670,753 13,681,591 RGD:1600115
G Rsrc1 arginine/serine-rich coiled-coil 1 GBrowse link 2 156,889,768 157,213,294 RGD:1600115
RGD:1624291
G Sap18 Sin3-associated polypeptide 18 GBrowse link 15 36,839,247 36,843,552 RGD:1624291
G Sarnp SAP domain containing ribonucleoprotein GBrowse link 7 2,121,254 2,176,071 RGD:1600115
RGD:1624291
G Slu7 SLU7 splicing factor homolog (S. cerevisiae) GBrowse link 10 28,536,630 28,551,427 RGD:1304333
RGD:1624291
G Smndc1 survival motor neuron domain containing 1 GBrowse link 1 259,596,813 259,607,340 RGD:1600115
G Son Son DNA binding protein GBrowse link 11 31,621,000 31,652,151 RGD:1600115
RGD:1624291
G Spop speckle-type POZ protein GBrowse link 10 84,099,990 84,185,130 RGD:1600115
RGD:1624291
G Sprtn SprT-like N-terminal domain GBrowse link 19 55,069,130 55,073,670 RGD:1600115
RGD:1624291
G Srp54a signal recognition particle 54A GBrowse link 6 75,446,838 75,494,001 RGD:1600115
G Srrm2 serine/arginine repetitive matrix 2 GBrowse link 10 13,066,871 13,081,983 RGD:1600115
RGD:1624291
G Srsf1 serine/arginine-rich splicing factor 1 GBrowse link 10 76,339,824 76,344,552 RGD:1600115
RGD:1624291
G Srsf2 serine/arginine-rich splicing factor 2 GBrowse link 10 106,954,365 106,956,807 RGD:1600115
RGD:1624291
G Srsf3 serine/arginine-rich splicing factor 3 GBrowse link 20 7,316,649 7,326,580 RGD:1600115
G Srsf5 serine/arginine-rich splicing factor 5 GBrowse link 6 104,728,286 104,732,982 RGD:1600115
RGD:1624291
G Srsf6 serine/arginine-rich splicing factor 6 GBrowse link 3 153,795,483 153,799,026 RGD:1600115
RGD:1624291
G Sry sex determining region Y RGD:1600115
G Sumo1 small ubiquitin-like modifier 1 GBrowse link 9 58,212,538 58,242,760 RGD:1600115
G Tardbp TAR DNA binding protein GBrowse link 5 165,698,665 165,709,531 RGD:5687141
G Tfip11 tuftelin interacting protein 11 GBrowse link 19 14,307,576 14,319,808 RGD:1600115
RGD:1624291
G Thap7 THAP domain containing 7 GBrowse link 11 85,474,475 85,477,516 RGD:1600115
RGD:1624291
G Thoc1 THO complex 1 GBrowse link 18 1,256,731 1,290,988 RGD:1600115
G Thoc5 THO complex 5 GBrowse link 14 85,561,381 85,612,915 RGD:1600115
G Thoc6 THO complex 6 homolog (Drosophila) GBrowse link 10 12,933,304 12,938,664 RGD:1600115
G Topors topoisomerase I binding, arginine/serine-rich, E3 ubiquitin protein ligase GBrowse link 5 57,663,121 57,676,619 RGD:1600115
RGD:1624291
G Trim69 tripartite motif-containing 69 GBrowse link 3 108,943,306 108,963,931 RGD:1600115
RGD:1624291
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific GBrowse link 1 211,629,025 211,640,008 RGD:1600115
RGD:1624291
G U2af1 U2 small nuclear RNA auxiliary factor 1 RGD:1600115
RGD:1624291
G U2af1l4 U2 small nuclear RNA auxiliary factor 1-like 4 GBrowse link 1 85,608,372 85,610,419 RGD:1600115
G U2af2 U2 small nuclear RNA auxiliary factor 2 GBrowse link 1 67,498,102 67,517,118 RGD:1624291
G Wbp11 WW domain binding protein 11 GBrowse link 4 173,823,936 173,837,308 RGD:1624291
G Wbp4 WW domain binding protein 4 GBrowse link 15 61,517,401 61,543,453 RGD:1600115
RGD:1624291
G Wt1 Wilms tumor 1 GBrowse link 3 90,529,704 90,577,280 RGD:1600115
RGD:1624291
G Wtap Wilms tumor 1 associated protein GBrowse link 1 41,891,437 41,917,254 RGD:1624291
G Ylpm1 YLP motif containing 1 GBrowse link 6 109,041,410 109,117,751 RGD:1600115
G Zbtb16 zinc finger and BTB domain containing 16 GBrowse link 8 51,931,530 52,094,813 RGD:1600115
RGD:1624291
G Zc3h14 zinc finger CCCH type containing 14 GBrowse link 6 122,919,317 122,956,935 RGD:1600115
G Zcchc12 zinc finger, CCHC domain containing 12 GBrowse link X 8,729,463 8,732,648 RGD:1600115
RGD:1624291
G Zcchc18 zinc finger, CCHC domain containing 18 RGD:1600115
G Zfp830 zinc finger protein 830 GBrowse link 10 70,983,767 70,985,231 RGD:1600115
RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 95740
    organelle part 17864
      intracellular organelle part 16998
        nuclear part 7282
          nucleoplasm part 1554
            nuclear body 558
              nuclear speck 216
                omega speckle 0
Path 2
Term Annotations click to browse term
  cellular_component 95740
    cell 72784
      cell part 72317
        intracellular 55733
          intracellular part 54684
            intracellular organelle 40542
              intracellular membrane-bounded organelle 33053
                nucleus 17959
                  nuclear part 7282
                    nuclear lumen 5398
                      nucleoplasm 1867
                        nucleoplasm part 1554
                          nuclear body 558
                            nuclear speck 216
                              omega speckle 0
paths to the root