Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | acute myeloid leukemia | | ISO | DHX15 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:27798625 and PMID:29163777 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | acute myeloid leukemia | | ISO | DHX15 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:27798625 and PMID:29163777 | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | Rat ISS GO annotations from GOA human gene data--August 2006 | GOA data from the GO Consortium |
3. | DExD/H-box RNA helicases in ribosome biogenesis. | Martin R, etal., RNA Biol. 2013 Jan;10(1):4-18. doi: 10.4161/rna.21879. Epub 2012 Aug 24. |
4. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
5. | KEGG Annotation Import Pipeline | Pipeline to import KEGG annotations from KEGG into RGD |
6. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
7. | Comprehensive gene review and curation | RGD comprehensive gene curation |
8. | RNA-interacting proteins act as site-specific repressors of ADAR2-mediated RNA editing and fluctuate upon neuronal stimulation. | Tariq A, etal., Nucleic Acids Res. 2013 Feb 1;41(4):2581-93. doi: 10.1093/nar/gks1353. Epub 2012 Dec 28. |
PMID:15146077 | PMID:19103666 | PMID:21266579 | PMID:22658674 | PMID:22681889 | PMID:24625528 |
Dhx15 (Rattus norvegicus - Norway rat) |
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DHX15 (Homo sapiens - human) |
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Dhx15 (Mus musculus - house mouse) |
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Dhx15 (Chinchilla lanigera - long-tailed chinchilla) |
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DHX15 (Pan paniscus - bonobo/pygmy chimpanzee) |
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DHX15 (Canis lupus familiaris - dog) |
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Dhx15 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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DHX15 (Sus scrofa - pig) |
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DHX15 (Chlorocebus sabaeus - green monkey) |
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Dhx15 (Heterocephalus glaber - naked mole-rat) |
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Variants in Dhx15
121 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
DHX15 |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 3 | 43 | 57 | 41 | 19 | 41 | 8 | 11 | 74 | 35 | 41 | 11 | 8 |
Low | |||||||||||||
Below cutoff |
RefSeq Transcripts | NM_001191597 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_006251031 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063272935 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063272936 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063272937 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_005492917 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_005492918 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | CH473963 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
JAXUCZ010000014 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000005126 ⟹ ENSRNOP00000005126 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000086889 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000087589 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000103809 ⟹ ENSRNOP00000081583 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001191597 ⟹ NP_001178526 | ||||||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_063272935 ⟹ XP_063129005 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063272936 ⟹ XP_063129006 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063272937 ⟹ XP_063129007 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XR_005492917 | ||||||||||||
Type: | NON-CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XR_005492918 | ||||||||||||
Type: | NON-CODING | ||||||||||||
Position: |
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Protein RefSeqs | NP_001178526 | (Get FASTA) | NCBI Sequence Viewer |
XP_063129005 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063129006 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063129007 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | EDL99895 | (Get FASTA) | NCBI Sequence Viewer |
EDL99896 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000005126 | ||
ENSRNOP00000005126.5 | |||
ENSRNOP00000081583.1 |
RefSeq Acc Id: | NP_001178526 ⟸ NM_001191597 |
- UniProtKB: | D3ZD97 (UniProtKB/TrEMBL), A6IJI2 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000005126 ⟸ ENSRNOT00000005126 |
RefSeq Acc Id: | ENSRNOP00000081583 ⟸ ENSRNOT00000103809 |
RefSeq Acc Id: | XP_063129005 ⟸ XM_063272935 |
- Peptide Label: | isoform X1 |
RefSeq Acc Id: | XP_063129006 ⟸ XM_063272936 |
- Peptide Label: | isoform X2 |
RefSeq Acc Id: | XP_063129007 ⟸ XM_063272937 |
- Peptide Label: | isoform X3 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-D3ZD97-F1-model_v2 | AlphaFold | D3ZD97 | 1-795 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13699338 | ||||||||
Promoter ID: | EPDNEW_R9863 | ||||||||
Type: | multiple initiation site | ||||||||
Name: | Dhx15_1 | ||||||||
Description: | DEAH-box helicase 15 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:1308072 | AgrOrtholog |
BioCyc Gene | G2FUF-15585 | BioCyc |
Ensembl Genes | ENSRNOG00000003844 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
ENSRNOG00000055850 | Ensembl | |
Ensembl Transcript | ENSRNOT00000005126 | ENTREZGENE |
ENSRNOT00000005126.7 | UniProtKB/TrEMBL | |
ENSRNOT00000103809.1 | UniProtKB/TrEMBL | |
Gene3D-CATH | 1.20.120.1080 | UniProtKB/TrEMBL |
3.40.50.300 | UniProtKB/TrEMBL | |
InterPro | DEAD-like_N | UniProtKB/TrEMBL |
DHX15_DEXHc | UniProtKB/TrEMBL | |
DNA/RNA_helicase_C | UniProtKB/TrEMBL | |
DNA/RNA_helicase_DEAD/DEAH_N | UniProtKB/TrEMBL | |
DNA/RNA_helicase_DEAH_CS | UniProtKB/TrEMBL | |
DUF1605 | UniProtKB/TrEMBL | |
HA2_WH | UniProtKB/TrEMBL | |
Helicase-assoc_dom | UniProtKB/TrEMBL | |
P-loop_NTPase | UniProtKB/TrEMBL | |
KEGG Report | rno:289693 | UniProtKB/TrEMBL |
NCBI Gene | 289693 | ENTREZGENE |
PANTHER | ATP-DEPENDENT RNA HELICASE | UniProtKB/TrEMBL |
PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE DHX15 | UniProtKB/TrEMBL | |
Pfam | DEAD | UniProtKB/TrEMBL |
DUF1605 | UniProtKB/TrEMBL | |
HA2 | UniProtKB/TrEMBL | |
HA2_C | UniProtKB/TrEMBL | |
Helicase_C | UniProtKB/TrEMBL | |
PhenoGen | Dhx15 | PhenoGen |
PROSITE | DEAH_ATP_HELICASE | UniProtKB/TrEMBL |
HELICASE_ATP_BIND_1 | UniProtKB/TrEMBL | |
HELICASE_CTER | UniProtKB/TrEMBL | |
RatGTEx | ENSRNOG00000003844 | RatGTEx |
ENSRNOG00000055850 | RatGTEx | |
SMART | DEXDc | UniProtKB/TrEMBL |
HA2 | UniProtKB/TrEMBL | |
HELICc | UniProtKB/TrEMBL | |
Superfamily-SCOP | SSF52540 | UniProtKB/TrEMBL |
UniProt | A0A8I5ZT94_RAT | UniProtKB/TrEMBL |
A6IJI2 | ENTREZGENE, UniProtKB/TrEMBL | |
D3ZD97 | ENTREZGENE, UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2021-03-09 | Dhx15 | DEAH-box helicase 15 | LOC100910750 | putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like | Data merged from RGD:6497185 | 737654 | PROVISIONAL |
2016-01-13 | Dhx15 | DEAH-box helicase 15 | Dhx15 | DEAH (Asp-Glu-Ala-His) box helicase 15 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2013-05-22 | Dhx15 | DEAH (Asp-Glu-Ala-His) box helicase 15 | Dhx15 | DEAH (Asp-Glu-Ala-His) box polypeptide 15 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2012-07-05 | LOC100910750 | putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like | Symbol and Name status set to provisional | 70820 | PROVISIONAL | ||
2008-04-30 | Dhx15 | DEAH (Asp-Glu-Ala-His) box polypeptide 15 | Dhx15_predicted | DEAH (Asp-Glu-Ala-His) box polypeptide 15 (predicted) | 'predicted' is removed | 2292626 | APPROVED |
2005-01-12 | Dhx15_predicted | DEAH (Asp-Glu-Ala-His) box polypeptide 15 (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |