| 61436 | Cia5 | Collagen induced arthritis QTL 5 | 4.9 | | Joint/bone inflammation | type II collagen induced | 10 | 95692240 | 140692240 | Rat |
| 1558652 | Bw57 | Body weight QTL 57 | 4.2 | .0008 | Body weight | | 10 | 95361338 | 140361338 | Rat |
| 70193 | Mcs7 | Mammary carcinoma susceptibility QTL 7 | 2.38 | | Mammary tumor susceptibility | | 10 | 76698917 | 121698917 | Rat |
| 1298078 | Stresp5 | Stress response QTL 5 | 2.99 | .00025 | Hormone level | corticosterone | 10 | 43458380 | 108776963 | Rat |
| 61354 | Pia10 | Pristane induced arthritis QTL 10 | | .01 | Joint/bone inflammation | pristane induced | 10 | 24006429 | 160657542 | Rat |
| 61396 | Bp9 | Blood pressure QTL 9 | 4.8 | .0001 | Blood pressure | salt-loaded systolic | 10 | 72871396 | 117871396 | Rat |
| 1300137 | Bp186 | Blood pressure QTL 186 | 3.57 | | Blood pressure | salt-loaded time series calculation | 10 | 95066219 | 140066219 | Rat |
| 631269 | Cia22 | Collagen induced arthritis QTL 22 | 8.9 | | Joint/bone inflammation | type II collagen induced | 10 | 41339689 | 152260081 | Rat |
| 631270 | Cia23 | Collagen induced arthritis QTL 23 | 3.9 | | Joint/bone inflammation | type II collagen induced | 10 | 41339689 | 152260081 | Rat |
| 631267 | Cia20 | Collagen induced arthritis QTL 20 | 3.2 | | Joint/bone inflammation | type II collagen induced | 10 | 24006429 | 160657542 | Rat |
| 631268 | Cia21 | Collagen induced arthritis QTL 21 | 3.1 | | Joint/bone inflammation | type II collagen induced | 10 | 14721135 | 159833317 | Rat |
| 1354641 | Bvd2 | Brain ventricular dilatation QTL 2 | 6.36 | .001 | Head/brain development | brain ventricular dilatation | 10 | 79981838 | 124981838 | Rat |
| 1302404 | Cia27 | Collagen induced arthritis QTL 27 | | | Joint/bone inflammation | type II collagen induced | 10 | 95695048 | 111406914 | Rat |
| 1358915 | Stresp7 | Stress response QTL 7 | 3.52 | | Hormone level | norepinephrine | 10 | 68955627 | 113955627 | Rat |
| 1576307 | Cia28 | Collagen induced arthritis QTL 28 | | | Joint/bone inflammation | type II collagen-induced | 10 | 100633512 | 145633512 | Rat |
| 1576308 | Schws1 | Schwannoma susceptibility QTL 1 | | .0041 | Neural tumor susceptibility | tumor incidence, length of survival time | 10 | 63816942 | 108816942 | Rat |
| 1576313 | Pia25 | Pristane induced arthritis QTL 25 | | | Joint/bone inflammation | pristane induced | 10 | 100633512 | 145633512 | Rat |
| 1578672 | Bmd16 | Bone mineral density QTL 16 | 6.2 | | Bone mineral density | femoral neck cortical vBMD | 10 | 101222719 | 146222719 | Rat |
| 1578663 | Bss18 | Bone structure and strength QTL 18 | 3.6 | | Bone structure | femoral neck width | 10 | 101222719 | 146222719 | Rat |
| 2293646 | Bss25 | Bone structure and strength QTL 25 | 10.96 | .0001 | Bone structure | | 10 | 74167134 | 119167134 | Rat |
| 2293663 | Bss33 | Bone structure and strength QTL 33 | 9.34 | .0001 | Bone structure | | 10 | 74167134 | 119167134 | Rat |
| 1600367 | Mcs15 | Mammary carcinoma susceptibility QTL 15 | 4.5 | | Mammary tumor susceptibility | | 10 | 89575059 | 108822775 | Rat |
| 2303118 | Mamtr7 | Mammary tumor resistance QTL 7 | | .003 | Mammary tumor resistance | | 10 | 9762188 | 108776963 | Rat |
| 2312668 | Scl65 | Serum cholesterol level QTL 65 | | .001 | Lipid level | serum cholesterol | 10 | 106422174 | 107033716 | Rat |
| 2312672 | Insul15 | Insulin level QTL 15 | | .01 | Insulin level | serum | 10 | 106422174 | 107033716 | Rat |
| 2298548 | Neuinf7 | Neuroinflammation QTL 7 | 2.2 | | Neuroinflammation | | 10 | 65668446 | 132729388 | Rat |
| 2312662 | Slep8 | Serum leptin concentration QTL 8 | | .05 | Hormone level | leptin | 10 | 106422174 | 107033716 | Rat |
| 2303589 | Bw87 | Body weight QTL 87 | 2 | | Body weight | | 10 | 86057484 | 131057484 | Rat |
| 2300172 | Bmd57 | Bone mineral density QTL 57 | 9.8 | .0001 | Bone mineral density | | 10 | 74167134 | 119167134 | Rat |
| 2293698 | Bss43 | Bone structure and strength QTL 43 | 5.33 | .0001 | Bone structure | | 10 | 62984501 | 107984501 | Rat |
| 2317039 | Aia6 | Adjuvant induced arthritis QTL 6 | 4.31 | | Joint/bone inflammation | adjuvant induced | 10 | 70229781 | 115229781 | Rat |
| 2317029 | Aia19 | Adjuvant induced arthritis QTL 19 | 2.98 | | Joint/bone inflammation | adjuvant induced | 10 | 70229781 | 115229781 | Rat |
| 2316949 | Gluco60 | Glucose level QTL 60 | 3.7 | | Glucose level | postprandial | 10 | 14721135 | 154166503 | Rat |
| 2317754 | Glom25 | Glomerulus QTL 25 | 3.5 | | Renal pathology | urine protein level | 10 | 86810917 | 131810917 | Rat |
| 4889492 | Pancm2 | Pancreatic morphology QTL 2 | 3.2 | | Pancreatic morphology | | 10 | 81350126 | 126350126 | Rat |
| 6893366 | Bw106 | Body weight QTL 106 | .3 | .47 | Body weight | | 10 | 74652410 | 119652410 | Rat |
| 1357340 | Bp250 | Blood pressure QTL 250 | | .0001 | Blood pressure | | 10 | 101848470 | 146848470 | Rat |
| 61363 | Oia3 | Oil induced arthritis QTL 3 | | .001 | Joint/bone inflammation | oil induced | 10 | 91455572 | 136455572 | Rat |
| 631539 | Oia6 | Oil induced arthritis QTL 6 | | | Joint/bone inflammation | arthritis susceptibility | 10 | 101532360 | 108776963 | Rat |
| 631538 | Oia5 | Oil induced arthritis QTL 5 | | | Joint/bone inflammation | arthritis susceptibility | 10 | 91168332 | 136168332 | Rat |
| 61325 | Aia5 | Adjuvant induced arthritis QTL 5 | | .01 | Joint/bone inflammation | arthritis severity | 10 | 24006429 | 160657542 | Rat |