U2af1l4 (U2 small nuclear RNA auxiliary factor 1-like 4) - Rat Genome Database

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Gene: U2af1l4 (U2 small nuclear RNA auxiliary factor 1-like 4) Rattus norvegicus
Analyze
Symbol: U2af1l4
Name: U2 small nuclear RNA auxiliary factor 1-like 4
RGD ID: 1305600
Description: Predicted to enable pre-mRNA 3'-splice site binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in cytoplasm and nuclear speck. Predicted to be part of U2AF complex and spliceosomal complex. Orthologous to human U2AF1L4 (U2 small nuclear RNA auxiliary factor 1 like 4); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Cb2-807; liver regeneration-related protein LRRG157/LRRG158; LOC361542; splicing factor U2AF 26 kDa subunit; U2 auxiliary factor 26; U2 small nuclear RNA auxiliary factor 1-like protein 4; U2AF1-like 4
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8194,943,684 - 94,945,906 (+)NCBIGRCr8
mRatBN7.2185,816,268 - 85,818,462 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl185,815,101 - 85,818,462 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx191,233,050 - 91,235,194 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0199,699,215 - 99,701,359 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0192,991,331 - 92,993,475 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0189,017,414 - 89,019,651 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl189,017,479 - 89,019,937 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0190,172,229 - 90,174,953 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4185,608,372 - 85,610,419 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1185,686,482 - 85,688,530 (+)NCBI
Celera180,187,746 - 80,189,793 (+)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
U2af1l4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8194,943,684 - 94,945,906 (+)NCBIGRCr8
mRatBN7.2185,816,268 - 85,818,462 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl185,815,101 - 85,818,462 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx191,233,050 - 91,235,194 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0199,699,215 - 99,701,359 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0192,991,331 - 92,993,475 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0189,017,414 - 89,019,651 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl189,017,479 - 89,019,937 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0190,172,229 - 90,174,953 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4185,608,372 - 85,610,419 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1185,686,482 - 85,688,530 (+)NCBI
Celera180,187,746 - 80,189,793 (+)NCBICelera
Cytogenetic Map1q21NCBI
U2AF1L4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381935,742,464 - 35,745,418 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1935,742,464 - 35,745,445 (-)EnsemblGRCh38hg38GRCh38
GRCh371936,233,365 - 36,236,319 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361940,925,268 - 40,928,176 (-)NCBINCBI36Build 36hg18NCBI36
Build 341940,925,272 - 40,928,146NCBI
Celera1932,946,905 - 32,949,813 (-)NCBICelera
Cytogenetic Map19q13.12NCBI
HuRef1932,738,416 - 32,741,324 (-)NCBIHuRef
CHM1_11936,234,748 - 36,237,646 (-)NCBICHM1_1
T2T-CHM13v2.01938,287,776 - 38,290,728 (-)NCBIT2T-CHM13v2.0
U2af1l4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39730,262,765 - 30,264,789 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl730,262,769 - 30,267,385 (+)EnsemblGRCm39 Ensembl
GRCm39 Ensembl730,262,726 - 30,264,790 (+)EnsemblGRCm39 Ensembl
GRCm38730,563,340 - 30,565,364 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl730,563,344 - 30,567,960 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl730,563,301 - 30,565,365 (+)EnsemblGRCm38mm10GRCm38
MGSCv37731,348,359 - 31,350,383 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36730,272,100 - 30,274,124 (+)NCBIMGSCv36mm8
Celera725,155,101 - 25,157,125 (+)NCBICelera
Cytogenetic Map7B1NCBI
cM Map718.61NCBI
U2AF1L4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22041,736,801 - 41,739,749 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11943,722,105 - 43,725,074 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01932,672,304 - 32,675,256 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11941,406,661 - 41,409,548 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1941,406,661 - 41,409,548 (-)Ensemblpanpan1.1panPan2
U2AF1L4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11116,888,680 - 116,890,911 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1116,888,720 - 116,890,923 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1116,293,931 - 116,296,172 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01117,491,646 - 117,493,887 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1117,491,675 - 117,497,074 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11117,055,022 - 117,057,262 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01116,678,643 - 116,680,884 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01117,734,028 - 117,736,264 (+)NCBIUU_Cfam_GSD_1.0
U2af1l4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934911,065,553 - 11,067,704 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936570578,178 - 580,133 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936570578,088 - 580,321 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
U2AF1L4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl645,168,927 - 45,172,305 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1645,167,556 - 45,172,382 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2640,625,562 - 40,627,833 (-)NCBISscrofa10.2Sscrofa10.2susScr3
U2AF1L4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1630,652,352 - 30,655,077 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660738,443,549 - 8,446,421 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in U2af1l4
3 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:66
Count of miRNA genes:31
Interacting mature miRNAs:33
Transcripts:ENSRNOT00000038154, ENSRNOT00000046569
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
4889494Scort2Serum corticosterone level QTL 24.2blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)180592172125592172Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)number of 20 x 20 cm floor squares crossed into, out of or within a discrete space in an experimental apparatus (CMO:0001514)183547917128547917Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)15386304190532583Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)17219768090508767Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)178430536123430536Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)166023617118608521Rat
1300121Hrtrt1Heart rate QTL 13.7heart pumping trait (VT:2000009)heart rate (CMO:0000002)165789093115540829Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13273727390665040Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)177876254106047988Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)177494165122494165Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)15673266898773277Rat
61344Bp29Blood pressure QTL 297.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)178350581123350581Rat
61433Cia2Collagen induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)17843075491209302Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)177857876122857876Rat
2300324Fetw1Fetal weight QTL 112.10.005fetal growth trait (VT:0004201)fetal body weight (CMO:0002080)185424647100358001Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)143284731118944897Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)182174743118944897Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)156949932101949932Rat

Markers in Region
RH128813  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2185,818,286 - 85,818,441 (+)MAPPERmRatBN7.2
Rnor_6.0189,019,476 - 89,019,630NCBIRnor6.0
Rnor_5.0190,174,291 - 90,174,445UniSTSRnor5.0
RGSC_v3.4185,610,434 - 85,610,588UniSTSRGSC3.4
Celera180,189,808 - 80,189,962UniSTS
RH 3.4 Map1846.3UniSTS
Cytogenetic Map1q21UniSTS
RH134336  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2185,815,395 - 85,815,937 (+)MAPPERmRatBN7.2
Rnor_6.0189,016,585 - 89,017,126NCBIRnor6.0
Rnor_5.0190,171,400 - 90,171,941UniSTSRnor5.0
RGSC_v3.4185,607,543 - 85,608,084UniSTSRGSC3.4
Celera180,186,917 - 80,187,458UniSTS
RH 3.4 Map1844.0UniSTS
Cytogenetic Map1q21UniSTS
RH125642  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2185,818,296 - 85,818,455 (+)MAPPERmRatBN7.2
Rnor_6.0189,019,486 - 89,019,644NCBIRnor6.0
Rnor_5.0190,174,301 - 90,174,459UniSTSRnor5.0
RGSC_v3.4185,610,444 - 85,610,602UniSTSRGSC3.4
Celera180,189,818 - 80,189,976UniSTS
Cytogenetic Map1q21UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 39 23 19 23 8 11 74 35 41 11 8
Low 18 18 18
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000038154   ⟹   ENSRNOP00000030286
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl185,816,225 - 85,818,274 (+)Ensembl
Rnor_6.0 Ensembl189,017,479 - 89,019,937 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000098092   ⟹   ENSRNOP00000086667
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl185,816,315 - 85,818,462 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000106498   ⟹   ENSRNOP00000088249
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl185,816,225 - 85,818,274 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000116214   ⟹   ENSRNOP00000095413
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl185,815,101 - 85,818,462 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000118586   ⟹   ENSRNOP00000082091
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl185,816,225 - 85,818,274 (+)Ensembl
RefSeq Acc Id: NM_001008775   ⟹   NP_001008775
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8194,943,761 - 94,945,906 (+)NCBI
mRatBN7.2185,816,317 - 85,818,462 (+)NCBI
Rnor_6.0189,017,414 - 89,019,461 (+)NCBI
Rnor_5.0190,172,229 - 90,174,953 (+)NCBI
RGSC_v3.4185,608,372 - 85,610,419 (+)RGD
Celera180,187,746 - 80,189,793 (+)RGD
Sequence:
RefSeq Acc Id: XM_006228777   ⟹   XP_006228839
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8194,943,764 - 94,945,906 (+)NCBI
mRatBN7.2185,816,337 - 85,818,462 (+)NCBI
Rnor_6.0189,017,521 - 89,019,651 (+)NCBI
Rnor_5.0190,172,229 - 90,174,953 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039081930   ⟹   XP_038937858
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8194,943,686 - 94,945,906 (+)NCBI
mRatBN7.2185,816,268 - 85,818,462 (+)NCBI
RefSeq Acc Id: XM_039081934   ⟹   XP_038937862
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8194,943,686 - 94,945,906 (+)NCBI
mRatBN7.2185,816,268 - 85,818,462 (+)NCBI
RefSeq Acc Id: XM_039081940   ⟹   XP_038937868
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8194,943,684 - 94,945,906 (+)NCBI
mRatBN7.2185,816,268 - 85,818,462 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001008775   ⟸   NM_001008775
- UniProtKB: Q7TP18 (UniProtKB/Swiss-Prot),   Q7TP17 (UniProtKB/Swiss-Prot),   A6J9Z2 (UniProtKB/TrEMBL),   A0A8I5ZTD8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006228839   ⟸   XM_006228777
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000030286   ⟸   ENSRNOT00000038154
RefSeq Acc Id: XP_038937858   ⟸   XM_039081930
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A441 (UniProtKB/TrEMBL),   A6J9Z3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937862   ⟸   XM_039081934
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A4P9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937868   ⟸   XM_039081940
- Peptide Label: isoform X4
RefSeq Acc Id: ENSRNOP00000095413   ⟸   ENSRNOT00000116214
RefSeq Acc Id: ENSRNOP00000088249   ⟸   ENSRNOT00000106498
RefSeq Acc Id: ENSRNOP00000086667   ⟸   ENSRNOT00000098092
RefSeq Acc Id: ENSRNOP00000082091   ⟸   ENSRNOT00000118586
Protein Domains
C3H1-type   RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7TP17-F1-model_v2 AlphaFold Q7TP17 1-220 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689923
Promoter ID:EPDNEW_R447
Type:multiple initiation site
Name:U2af1l4_1
Description:U2 small nuclear RNA auxiliary factor 1-like 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0189,017,513 - 89,017,573EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305600 AgrOrtholog
BioCyc Gene G2FUF-60096 BioCyc
Ensembl Genes ENSRNOG00000024497 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000038154 ENTREZGENE
  ENSRNOT00000038154.5 UniProtKB/Swiss-Prot
  ENSRNOT00000098092.1 UniProtKB/TrEMBL
  ENSRNOT00000106498.1 UniProtKB/TrEMBL
  ENSRNOT00000116214.1 UniProtKB/Swiss-Prot
  ENSRNOT00000118586.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  U2AF_small UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_CCCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:361542 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 361542 ENTREZGENE
PANTHER PTHR12620 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPLICING FACTOR U2AF 26 KDA SUBUNIT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  U2 SMALL NUCLEAR RNA AUXILIARY FACTOR 1 UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-CCCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen U2af1l4 PhenoGen
PRINTS U2AUXFACTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_C3H1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000024497 RatGTEx
SMART RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C3H1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5ZTD8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A441 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A4P9 ENTREZGENE, UniProtKB/TrEMBL
  A6J9Z2 ENTREZGENE, UniProtKB/TrEMBL
  A6J9Z3 ENTREZGENE, UniProtKB/TrEMBL
  A6J9Z4_RAT UniProtKB/TrEMBL
  A6J9Z5_RAT UniProtKB/TrEMBL
  A6J9Z6_RAT UniProtKB/TrEMBL
  A6J9Z7_RAT UniProtKB/TrEMBL
  Q7TP17 ENTREZGENE
  Q7TP18 ENTREZGENE
  U2AF4_RAT UniProtKB/Swiss-Prot
UniProt Secondary Q7TP18 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 U2af1l4  U2 small nuclear RNA auxiliary factor 1-like 4  U2af1l4_predicted  U2 small nuclear RNA auxiliary factor 1-like 4 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 U2af1l4_predicted  U2 small nuclear RNA auxiliary factor 1-like 4 (predicted)      Symbol and Name status set to approved 70820 APPROVED