Pspc1 (paraspeckle component 1) - Rat Genome Database

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Gene: Pspc1 (paraspeckle component 1) Rattus norvegicus
Analyze
Symbol: Pspc1
Name: paraspeckle component 1
RGD ID: 1310122
Description: Predicted to enable RNA binding activity. Predicted to be involved in several processes, including activation of innate immune response; negative regulation of DNA-templated transcription; and regulation of circadian rhythm. Predicted to be located in fibrillar center and nucleoplasm. Predicted to be active in paraspeckles. Orthologous to human PSPC1 (paraspeckle component 1); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC305910; MGC116378; paraspeckle protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81534,941,445 - 35,027,460 (-)NCBIGRCr8
mRatBN7.21530,828,617 - 30,911,315 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1530,828,626 - 30,911,202 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1532,843,198 - 32,902,554 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01533,993,854 - 34,053,213 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01532,251,952 - 32,311,317 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01536,946,914 - 37,030,273 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1536,950,257 - 37,030,281 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01540,799,244 - 40,883,016 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41535,718,357 - 35,779,139 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11535,734,056 - 35,794,839 (-)NCBI
Celera1530,565,581 - 30,624,899 (-)NCBICelera
Cytogenetic Map15p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
14-Deoxy-11,12-didehydroandrographolide  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,6-dinitrotoluene  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (ISO)
aconitine  (EXP)
aflatoxin B1  (EXP,ISO)
Aroclor 1254  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
butanal  (ISO)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (ISO)
chloroacetaldehyde  (ISO)
chlorpyrifos  (ISO)
cidofovir anhydrous  (ISO)
cisplatin  (ISO)
clodronic acid  (ISO)
clofibrate  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
daidzein  (ISO)
daidzein 7-O-beta-D-glucoside  (ISO)
decabromodiphenyl ether  (ISO)
deoxynivalenol  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
genistein  (ISO)
genistein 7-O-beta-D-glucoside  (ISO)
gentamycin  (EXP)
glycitein  (ISO)
glycitin  (ISO)
ifosfamide  (ISO)
indole-3-methanol  (EXP)
ivermectin  (ISO)
methapyrilene  (EXP,ISO)
methyl methanesulfonate  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (ISO)
pentanal  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
progesterone  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sodium fluoride  (ISO)
temozolomide  (ISO)
tetrachloromethane  (EXP,ISO)
topotecan  (EXP)
trichloroethene  (EXP)
trimellitic anhydride  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function
protein binding  (ISO)
RNA binding  (IBA,IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:19217333   PMID:22658674   PMID:22681889   PMID:22840402   PMID:22966205   PMID:28712728   PMID:30053369  


Genomics

Comparative Map Data
Pspc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81534,941,445 - 35,027,460 (-)NCBIGRCr8
mRatBN7.21530,828,617 - 30,911,315 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1530,828,626 - 30,911,202 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1532,843,198 - 32,902,554 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01533,993,854 - 34,053,213 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01532,251,952 - 32,311,317 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01536,946,914 - 37,030,273 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1536,950,257 - 37,030,281 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01540,799,244 - 40,883,016 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41535,718,357 - 35,779,139 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11535,734,056 - 35,794,839 (-)NCBI
Celera1530,565,581 - 30,624,899 (-)NCBICelera
Cytogenetic Map15p12NCBI
PSPC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381319,671,205 - 19,782,945 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1319,674,752 - 19,783,019 (-)EnsemblGRCh38hg38GRCh38
GRCh371320,248,892 - 20,357,085 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361319,146,896 - 19,255,083 (-)NCBINCBI36Build 36hg18NCBI36
Build 341319,147,527 - 19,255,082NCBI
Celera131,310,734 - 1,418,914 (-)NCBICelera
Cytogenetic Map13q12.11NCBI
HuRef131,053,841 - 1,162,259 (-)NCBIHuRef
CHM1_11320,216,795 - 20,325,586 (-)NCBICHM1_1
T2T-CHM13v2.01318,867,270 - 18,979,203 (-)NCBIT2T-CHM13v2.0
Pspc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391456,959,898 - 57,015,775 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1456,958,167 - 57,015,773 (-)EnsemblGRCm39 Ensembl
GRCm381456,722,441 - 56,778,318 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1456,720,710 - 56,778,316 (-)EnsemblGRCm38mm10GRCm38
MGSCv371457,341,286 - 57,397,153 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361455,676,559 - 55,732,426 (-)NCBIMGSCv36mm8
Celera1454,520,204 - 54,576,103 (-)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1428.4NCBI
Pspc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955497575,340 - 642,809 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955497574,678 - 641,885 (-)NCBIChiLan1.0ChiLan1.0
PSPC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21419,304,282 - 19,410,858 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11310,416,794 - 10,522,261 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0131,001,131 - 1,106,627 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11319,319,242 - 19,424,074 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1319,347,276 - 19,428,997 (-)Ensemblpanpan1.1panPan2
PSPC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12518,287,827 - 18,361,801 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2518,287,899 - 18,359,553 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2518,317,277 - 18,391,326 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02518,425,772 - 18,499,922 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2518,425,958 - 18,497,672 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12518,291,628 - 18,365,647 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02518,303,745 - 18,377,811 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02518,360,192 - 18,434,592 (+)NCBIUU_Cfam_GSD_1.0
Pspc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945120,329,144 - 120,422,113 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367201,876,475 - 1,967,662 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367201,876,726 - 1,941,705 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSPC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl11482,564 - 572,090 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.111477,010 - 572,090 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21186,908,816 - 86,971,424 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PSPC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.131,160,227 - 1,232,390 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605743,304,564 - 43,413,173 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pspc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477617,906,063 - 17,978,098 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477617,906,700 - 17,978,885 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pspc1
124 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:28
Count of miRNA genes:26
Interacting mature miRNAs:28
Transcripts:ENSRNOT00000028219
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)151985656634924750Rat

Markers in Region
BE104349  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21530,877,811 - 30,877,990 (+)MAPPERmRatBN7.2
Rnor_6.01536,996,721 - 36,996,899NCBIRnor6.0
Rnor_5.01540,849,051 - 40,849,229UniSTSRnor5.0
RGSC_v3.41535,745,751 - 35,745,929UniSTSRGSC3.4
Celera1530,591,544 - 30,591,722UniSTS
Cytogenetic Map15p12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 30 39 23 19 23 2 2 74 33 41 11 2
Low 13 18 18 18 6 9 2 6
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000028219   ⟹   ENSRNOP00000028219
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1530,851,850 - 30,911,202 (-)Ensembl
Rnor_6.0 Ensembl1536,970,148 - 37,030,240 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000075879
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1536,970,474 - 36,976,645 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000075993
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1536,970,461 - 36,973,079 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000076766
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1536,972,564 - 36,973,190 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000076913
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1530,851,850 - 30,911,202 (-)Ensembl
Rnor_6.0 Ensembl1536,969,807 - 36,978,358 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000088037   ⟹   ENSRNOP00000070730
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1530,828,626 - 30,911,202 (-)Ensembl
Rnor_6.0 Ensembl1536,950,257 - 37,030,281 (-)Ensembl
RefSeq Acc Id: NM_001025672   ⟹   NP_001020843
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81534,967,477 - 35,026,828 (-)NCBI
mRatBN7.21530,851,848 - 30,911,202 (-)NCBI
Rnor_6.01536,970,155 - 37,030,220 (-)NCBI
Rnor_5.01540,799,244 - 40,883,016 (-)NCBI
RGSC_v3.41535,718,357 - 35,779,139 (-)RGD
Celera1530,565,581 - 30,624,899 (-)RGD
Sequence:
RefSeq Acc Id: XM_039093316   ⟹   XP_038949244
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81534,944,248 - 35,027,460 (-)NCBI
mRatBN7.21530,828,617 - 30,911,315 (-)NCBI
RefSeq Acc Id: XM_039093317   ⟹   XP_038949245
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81534,941,445 - 35,027,454 (-)NCBI
mRatBN7.21530,828,617 - 30,911,302 (-)NCBI
RefSeq Acc Id: XM_063274262   ⟹   XP_063130332
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81534,944,248 - 35,027,358 (-)NCBI
RefSeq Acc Id: NP_001020843   ⟸   NM_001025672
- UniProtKB: Q4KLH4 (UniProtKB/Swiss-Prot),   A6KHA3 (UniProtKB/TrEMBL),   A0A8I6ATP2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000028219   ⟸   ENSRNOT00000028219
RefSeq Acc Id: ENSRNOP00000070730   ⟸   ENSRNOT00000088037
RefSeq Acc Id: XP_038949244   ⟸   XM_039093316
- Peptide Label: isoform X2
- UniProtKB: A0A0G2JYN7 (UniProtKB/TrEMBL),   A0A8I6ATP2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949245   ⟸   XM_039093317
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063130332   ⟸   XM_063274262
- Peptide Label: isoform X1
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4KLH4-F1-model_v2 AlphaFold Q4KLH4 1-522 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699716
Promoter ID:EPDNEW_R10239
Type:multiple initiation site
Name:Pspc1_1
Description:paraspeckle component 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01537,030,228 - 37,030,288EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310122 AgrOrtholog
BioCyc Gene G2FUF-13624 BioCyc
Ensembl Genes ENSRNOG00000020782 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055012311 UniProtKB/Swiss-Prot
  ENSRNOG00060017855 UniProtKB/Swiss-Prot
  ENSRNOG00065031815 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000028219 ENTREZGENE
  ENSRNOT00000028219.7 UniProtKB/Swiss-Prot
  ENSRNOT00000076913.3 UniProtKB/TrEMBL
  ENSRNOT00000088037.2 UniProtKB/TrEMBL
  ENSRNOT00055020961 UniProtKB/Swiss-Prot
  ENSRNOT00060030665 UniProtKB/Swiss-Prot
  ENSRNOT00065054823 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  6.10.250.1170 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7384173 IMAGE-MGC_LOAD
InterPro NOPS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PSP1_RRM1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:305910 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:116378 IMAGE-MGC_LOAD
NCBI Gene 305910 ENTREZGENE
PANTHER PARASPECKLE COMPONENT 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNA RECOGNITION MOTIF-CONTAINING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam NOPS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pspc1 PhenoGen
PROSITE RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000020782 RatGTEx
  ENSRNOG00055012311 RatGTEx
  ENSRNOG00060017855 RatGTEx
  ENSRNOG00065031815 RatGTEx
SMART RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JYN7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ATP2 ENTREZGENE, UniProtKB/TrEMBL
  A6KHA3 ENTREZGENE, UniProtKB/TrEMBL
  PSPC1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-11-06 Pspc1  paraspeckle component 1  Pspc1  paraspeckle protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Pspc1  paraspeckle protein 1  Pspc1_predicted  paraspeckle protein 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Pspc1_predicted  paraspeckle protein 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED