Thap7 (THAP domain containing 7) - Rat Genome Database

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Gene: Thap7 (THAP domain containing 7) Rattus norvegicus
Analyze
Symbol: Thap7
Name: THAP domain containing 7
RGD ID: 1308061
Description: Predicted to enable several functions, including C2H2 zinc finger domain binding activity; histone binding activity; and histone deacetylase binding activity. Predicted to be involved in chromatin organization and negative regulation of transcription by RNA polymerase II. Predicted to be located in nuclear membrane and nuclear speck. Predicted to be part of chromatin. Predicted to be active in nucleus. Orthologous to human THAP7 (THAP domain containing 7); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 4-amino-2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC287944; THAP domain-containing protein 7
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81196,986,720 - 96,990,375 (+)NCBIGRCr8
mRatBN7.21183,482,958 - 83,486,136 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1183,483,037 - 83,486,436 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1192,210,450 - 92,213,551 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01184,871,609 - 84,874,710 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01183,925,217 - 83,928,318 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01187,399,430 - 87,403,381 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1187,399,483 - 87,403,367 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01190,450,724 - 90,453,825 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41185,474,475 - 85,477,516 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11185,508,396 - 85,518,115 (+)NCBI
Celera1182,251,641 - 82,254,742 (+)NCBICelera
Cytogenetic Map11q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:17577209   PMID:25416956  


Genomics

Comparative Map Data
Thap7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81196,986,720 - 96,990,375 (+)NCBIGRCr8
mRatBN7.21183,482,958 - 83,486,136 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1183,483,037 - 83,486,436 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1192,210,450 - 92,213,551 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01184,871,609 - 84,874,710 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01183,925,217 - 83,928,318 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01187,399,430 - 87,403,381 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1187,399,483 - 87,403,367 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01190,450,724 - 90,453,825 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41185,474,475 - 85,477,516 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11185,508,396 - 85,518,115 (+)NCBI
Celera1182,251,641 - 82,254,742 (+)NCBICelera
Cytogenetic Map11q23NCBI
THAP7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382220,999,104 - 21,002,118 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2220,999,104 - 21,002,196 (-)EnsemblGRCh38hg38GRCh38
GRCh372221,353,393 - 21,356,407 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362219,684,061 - 19,686,404 (-)NCBINCBI36Build 36hg18NCBI36
Build 342219,678,614 - 19,680,958NCBI
Celera224,845,380 - 4,847,723 (-)NCBICelera
Cytogenetic Map22q11.21NCBI
HuRef224,622,333 - 4,624,676 (-)NCBIHuRef
CHM1_12221,354,262 - 21,356,605 (-)NCBICHM1_1
T2T-CHM13v2.02221,407,895 - 21,410,909 (-)NCBIT2T-CHM13v2.0
Thap7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391617,345,823 - 17,349,975 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1617,345,846 - 17,349,000 (-)EnsemblGRCm39 Ensembl
GRCm381617,527,959 - 17,531,151 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1617,527,982 - 17,531,136 (-)EnsemblGRCm38mm10GRCm38
MGSCv371617,528,075 - 17,531,145 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361617,441,545 - 17,444,615 (-)NCBIMGSCv36mm8
Celera1618,101,087 - 18,104,157 (-)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1610.86NCBI
Thap7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544219,311,574 - 19,313,779 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544219,311,307 - 19,313,779 (+)NCBIChiLan1.0ChiLan1.0
THAP7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22330,706,563 - 30,708,987 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12233,255,500 - 33,258,634 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0223,223,789 - 3,226,213 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12219,713,740 - 19,716,088 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2219,713,740 - 19,716,068 (-)Ensemblpanpan1.1panPan2
THAP7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12630,498,718 - 30,501,085 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2630,498,785 - 30,525,906 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2630,457,172 - 30,459,520 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02631,907,748 - 31,910,097 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2631,907,796 - 31,909,999 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12629,953,397 - 29,955,975 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02629,577,606 - 29,579,953 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02630,666,574 - 30,668,922 (+)NCBIUU_Cfam_GSD_1.0
Thap7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118140,225,715 - 140,228,910 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366192,525,152 - 2,528,242 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
THAP7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1450,591,410 - 50,594,105 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11450,591,412 - 50,593,778 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21454,040,150 - 54,042,527 (-)NCBISscrofa10.2Sscrofa10.2susScr3
THAP7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1194,935,872 - 4,938,181 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl194,935,976 - 4,938,152 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660852,030,881 - 2,033,748 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Thap7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624945688,185 - 690,480 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624945687,941 - 690,480 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Thap7
7 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:43
Count of miRNA genes:37
Interacting mature miRNAs:38
Transcripts:ENSRNOT00000057751
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)115445753486241447Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)115635142486241447Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)116034659086241447Rat
634339Niddm50Non-insulin dependent diabetes mellitus QTL 503.32blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)116642214886241447Rat
1354593Stl12Serum triglyceride level QTL 123.36blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)116642214886241447Rat

Markers in Region
RH132822  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21183,485,703 - 83,485,908 (-)MAPPERmRatBN7.2
Rnor_6.01187,399,658 - 87,399,862NCBIRnor6.0
Rnor_5.01190,450,952 - 90,451,156UniSTSRnor5.0
RGSC_v3.41185,477,145 - 85,477,349UniSTSRGSC3.4
Celera1182,254,310 - 82,254,514UniSTS
RH 3.4 Map11715.8UniSTS
Cytogenetic Map11q23UniSTS
RH142095  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21183,486,292 - 83,486,498 (-)MAPPERmRatBN7.2
Rnor_6.01187,399,068 - 87,399,273NCBIRnor6.0
Rnor_5.01190,450,362 - 90,450,567UniSTSRnor5.0
RGSC_v3.41185,477,734 - 85,477,939UniSTSRGSC3.4
Celera1182,254,899 - 82,255,104UniSTS
RH 3.4 Map11716.9UniSTS
Cytogenetic Map11q23UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 10 4 9 4 66 23 39 5
Low 2 43 47 37 10 37 8 11 8 12 2 6 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000057751   ⟹   ENSRNOP00000054562
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1183,483,037 - 83,485,980 (+)Ensembl
Rnor_6.0 Ensembl1187,399,483 - 87,403,367 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000104452   ⟹   ENSRNOP00000096770
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1183,483,377 - 83,486,436 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000111762   ⟹   ENSRNOP00000094825
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1183,483,377 - 83,486,436 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000116617   ⟹   ENSRNOP00000097153
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1183,483,058 - 83,486,436 (+)Ensembl
RefSeq Acc Id: NM_001105863   ⟹   NP_001099333
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81196,987,274 - 96,990,375 (+)NCBI
mRatBN7.21183,483,035 - 83,486,136 (+)NCBI
Rnor_6.01187,399,430 - 87,402,531 (-)NCBI
Rnor_5.01190,450,724 - 90,453,825 (-)NCBI
RGSC_v3.41185,474,475 - 85,477,516 (+)RGD
Celera1182,251,641 - 82,254,742 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008768864   ⟹   XP_008767086
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81196,987,199 - 96,990,235 (+)NCBI
mRatBN7.21183,482,958 - 83,485,998 (+)NCBI
Rnor_6.01187,399,570 - 87,402,245 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039088074   ⟹   XP_038944002
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81196,987,204 - 96,990,235 (+)NCBI
mRatBN7.21183,483,074 - 83,485,998 (+)NCBI
RefSeq Acc Id: XM_039088075   ⟹   XP_038944003
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81196,986,720 - 96,990,235 (+)NCBI
mRatBN7.21183,483,074 - 83,485,998 (+)NCBI
RefSeq Acc Id: XM_039088076   ⟹   XP_038944004
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81196,987,199 - 96,990,235 (+)NCBI
mRatBN7.21183,482,958 - 83,485,998 (+)NCBI
RefSeq Acc Id: XM_039088077   ⟹   XP_038944005
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81196,987,205 - 96,990,235 (+)NCBI
mRatBN7.21183,482,958 - 83,485,998 (+)NCBI
RefSeq Acc Id: XM_063270324   ⟹   XP_063126394
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81196,986,720 - 96,990,235 (+)NCBI
RefSeq Acc Id: XM_063270325   ⟹   XP_063126395
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81196,987,199 - 96,990,235 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001099333   ⟸   NM_001105863
- UniProtKB: A0A8I6B5E1 (UniProtKB/TrEMBL),   A6JSL3 (UniProtKB/TrEMBL),   A0A8I6AQX2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008767086   ⟸   XM_008768864
- Peptide Label: isoform X1
- UniProtKB: G3V9P2 (UniProtKB/TrEMBL),   A0A8I6AQX2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000054562   ⟸   ENSRNOT00000057751
RefSeq Acc Id: XP_038944004   ⟸   XM_039088076
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038944005   ⟸   XM_039088077
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038944003   ⟸   XM_039088075
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AQX2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944002   ⟸   XM_039088074
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AQX2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000097153   ⟸   ENSRNOT00000116617
RefSeq Acc Id: ENSRNOP00000094825   ⟸   ENSRNOT00000111762
RefSeq Acc Id: ENSRNOP00000096770   ⟸   ENSRNOT00000104452
RefSeq Acc Id: XP_063126394   ⟸   XM_063270324
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063126395   ⟸   XM_063270325
- Peptide Label: isoform X5
Protein Domains
THAP-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V9P2-F1-model_v2 AlphaFold G3V9P2 1-309 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698320
Promoter ID:EPDNEW_R8844
Type:multiple initiation site
Name:Thap7_1
Description:THAP domain containing 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01187,402,529 - 87,402,589EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308061 AgrOrtholog
BioCyc Gene G2FUF-20592 BioCyc
Ensembl Genes ENSRNOG00000037967 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000057751.5 UniProtKB/TrEMBL
  ENSRNOT00000104452.1 UniProtKB/TrEMBL
  ENSRNOT00000111762.1 UniProtKB/TrEMBL
  ENSRNOT00000116617 ENTREZGENE
  ENSRNOT00000116617.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7110405 IMAGE-MGC_LOAD
InterPro THAP7 UniProtKB/TrEMBL
  Znf_C2CH UniProtKB/TrEMBL
KEGG Report rno:287944 UniProtKB/TrEMBL
MGC_CLONE MGC:94877 IMAGE-MGC_LOAD
NCBI Gene 287944 ENTREZGENE
PANTHER PTHR47502 UniProtKB/TrEMBL
  THAP DOMAIN-CONTAINING PROTEIN 7 UniProtKB/TrEMBL
Pfam THAP UniProtKB/TrEMBL
PhenoGen Thap7 PhenoGen
PROSITE ZF_THAP UniProtKB/TrEMBL
RatGTEx ENSRNOG00000037967 RatGTEx
SMART DM3 UniProtKB/TrEMBL
  THAP UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
UniProt A0A8I6AQX2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6B5E1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GKX4_RAT UniProtKB/TrEMBL
  A6JSL3 ENTREZGENE, UniProtKB/TrEMBL
  B5DFB5_RAT UniProtKB/TrEMBL
  G3V9P2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Thap7  THAP domain containing 7  Thap7_predicted  THAP domain containing 7 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Thap7_predicted  THAP domain containing 7 (predicted)      Symbol and Name status set to approved 70820 APPROVED