Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | adenoid cystic carcinoma | | ISO | ERBIN (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:23685749 | |
|
Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | adenoid cystic carcinoma | | ISO | ERBIN (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:23685749 | |
|
|
|
|
|
|
|
|
# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | Erbin is a protein concentrated at postsynaptic membranes that interacts with PSD-95. | Huang YZ, etal., J Biol Chem. 2001 Jun 1;276(22):19318-26. doi: 10.1074/jbc.M100494200. Epub 2001 Mar 12. |
3. | GOA pipeline | RGD automated data pipeline |
4. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
5. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:10878805 | PMID:11375975 | PMID:16203728 | PMID:22564389 | PMID:23354328 | PMID:25931508 |
Erbin (Rattus norvegicus - Norway rat) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ERBIN (Homo sapiens - human) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Erbin (Mus musculus - house mouse) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Erbin (Chinchilla lanigera - long-tailed chinchilla) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ERBIN (Pan paniscus - bonobo/pygmy chimpanzee) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ERBIN (Canis lupus familiaris - dog) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Erbin (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ERBIN (Sus scrofa - pig) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ERBIN (Chlorocebus sabaeus - green monkey) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Erbin (Heterocephalus glaber - naked mole-rat) |
|
.
Variants in Erbin
177 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
D2Rat11 |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
RH128622 |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
RH131798 |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
G07329 |
|
alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 3 | 41 | 55 | 39 | 19 | 39 | 8 | 10 | 74 | 35 | 38 | 11 | 8 |
Low | 2 | 2 | 2 | 2 | 1 | 3 | |||||||
Below cutoff |
RefSeq Transcripts | NM_001427815 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_017591179 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017591180 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017591181 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017591183 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017591184 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017591185 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017593684 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039103490 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039103491 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039103492 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063282243 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063282244 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063282245 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063282246 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063282247 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | JAXUCZ010000002 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000075196 ⟹ ENSRNOP00000066263 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | ENSRNOT00000095613 ⟹ ENSRNOP00000088858 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | ENSRNOT00000096272 ⟹ ENSRNOP00000090634 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | ENSRNOT00000098587 ⟹ ENSRNOP00000091667 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | ENSRNOT00000118167 ⟹ ENSRNOP00000079671 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | ENSRNOT00000118358 ⟹ ENSRNOP00000083915 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | NM_001427815 ⟹ NP_001414744 | ||||||||
RefSeq Status: | VALIDATED | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_017591179 ⟹ XP_017446668 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
|
||||||||||||||||
Sequence: |
RefSeq Acc Id: | XM_017591180 ⟹ XP_017446669 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
|
||||||||||||||||
Sequence: |
RefSeq Acc Id: | XM_017591181 ⟹ XP_017446670 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
|
||||||||||||||||
Sequence: |
RefSeq Acc Id: | XM_017591184 ⟹ XP_017446673 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
|
||||||||||||||||
Sequence: |
RefSeq Acc Id: | XM_039103490 ⟹ XP_038959418 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | XM_039103491 ⟹ XP_038959419 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | XM_039103492 ⟹ XP_038959420 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | XM_063282243 ⟹ XP_063138313 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_063282244 ⟹ XP_063138314 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_063282245 ⟹ XP_063138315 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_063282246 ⟹ XP_063138316 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_063282247 ⟹ XP_063138317 | ||||||||
Type: | CODING | ||||||||
Position: |
|
Protein RefSeqs | NP_001414744 | (Get FASTA) | NCBI Sequence Viewer |
XP_017446668 | (Get FASTA) | NCBI Sequence Viewer | |
XP_017446669 | (Get FASTA) | NCBI Sequence Viewer | |
XP_017446670 | (Get FASTA) | NCBI Sequence Viewer | |
XP_017446673 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038959418 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038959419 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038959420 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063138313 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063138314 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063138315 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063138316 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063138317 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000066263 | ||
ENSRNOP00000066263.3 | |||
ENSRNOP00000079671.1 | |||
ENSRNOP00000083915.1 | |||
ENSRNOP00000088858 | |||
ENSRNOP00000088858.1 | |||
ENSRNOP00000090634 | |||
ENSRNOP00000090634.1 | |||
ENSRNOP00000091667 | |||
ENSRNOP00000091667.1 |
RefSeq Acc Id: | XP_017446669 ⟸ XM_017591180 |
- Peptide Label: | isoform X2 |
- UniProtKB: | A0A8I5ZN42 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_017446673 ⟸ XM_017591184 |
- Peptide Label: | isoform X6 |
- UniProtKB: | A0A8I6ACI5 (UniProtKB/TrEMBL), A0A8I5ZN42 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_017446670 ⟸ XM_017591181 |
- Peptide Label: | isoform X3 |
- UniProtKB: | A0A8I5ZN42 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_017446668 ⟸ XM_017591179 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A0A8I6AE43 (UniProtKB/TrEMBL), A0A8I5ZN42 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000066263 ⟸ ENSRNOT00000075196 |
RefSeq Acc Id: | XP_038959419 ⟸ XM_039103491 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A0A8I6AE43 (UniProtKB/TrEMBL), A0A8I5ZN42 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038959418 ⟸ XM_039103490 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A0A8I6AE43 (UniProtKB/TrEMBL), A0A8I5ZN42 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038959420 ⟸ XM_039103492 |
- Peptide Label: | isoform X8 |
- UniProtKB: | A0A8I6A8N1 (UniProtKB/TrEMBL), A0A8I5ZN42 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | ENSRNOP00000088858 ⟸ ENSRNOT00000095613 |
RefSeq Acc Id: | ENSRNOP00000090634 ⟸ ENSRNOT00000096272 |
RefSeq Acc Id: | ENSRNOP00000083915 ⟸ ENSRNOT00000118358 |
RefSeq Acc Id: | ENSRNOP00000091667 ⟸ ENSRNOT00000098587 |
RefSeq Acc Id: | ENSRNOP00000079671 ⟸ ENSRNOT00000118167 |
RefSeq Acc Id: | NP_001414744 ⟸ NM_001427815 |
- Peptide Label: | isoform 2 |
RefSeq Acc Id: | XP_063138316 ⟸ XM_063282246 |
- Peptide Label: | isoform X9 |
RefSeq Acc Id: | XP_063138315 ⟸ XM_063282245 |
- Peptide Label: | isoform X7 |
RefSeq Acc Id: | XP_063138314 ⟸ XM_063282244 |
- Peptide Label: | isoform X5 |
RefSeq Acc Id: | XP_063138313 ⟸ XM_063282243 |
- Peptide Label: | isoform X4 |
RefSeq Acc Id: | XP_063138317 ⟸ XM_063282247 |
- Peptide Label: | isoform X10 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-M0R9T2-F1-model_v2 | AlphaFold | M0R9T2 | 1-1258 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
Database | Acc Id | Source(s) |
AGR Gene | RGD:1562952 | AgrOrtholog |
BioCyc Gene | G2FUF-54562 | BioCyc |
Ensembl Genes | ENSRNOG00000047137 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000075196.4 | UniProtKB/TrEMBL |
ENSRNOT00000095613.1 | UniProtKB/TrEMBL | |
ENSRNOT00000096272.1 | UniProtKB/TrEMBL | |
ENSRNOT00000098587.1 | UniProtKB/TrEMBL | |
ENSRNOT00000118167.1 | UniProtKB/TrEMBL | |
ENSRNOT00000118358.1 | UniProtKB/TrEMBL | |
Gene3D-CATH | 2.30.42.10 | UniProtKB/TrEMBL |
3.80.10.10 | UniProtKB/TrEMBL | |
InterPro | L_dom-like | UniProtKB/TrEMBL |
Leu-rich_rpt | UniProtKB/TrEMBL | |
Leu-rich_rpt_typical-subtyp | UniProtKB/TrEMBL | |
PDZ | UniProtKB/TrEMBL | |
PDZ_sf | UniProtKB/TrEMBL | |
NCBI Gene | 365661 | ENTREZGENE |
PANTHER | DISCS LARGE | UniProtKB/TrEMBL |
PTHR23119:SF46 | UniProtKB/TrEMBL | |
Pfam | LRR_8 | UniProtKB/TrEMBL |
PDZ | UniProtKB/TrEMBL | |
PhenoGen | Erbin | PhenoGen |
PROSITE | LRR | UniProtKB/TrEMBL |
PDZ | UniProtKB/TrEMBL | |
RatGTEx | ENSRNOG00000047137 | RatGTEx |
SMART | LRR_BAC | UniProtKB/TrEMBL |
LRR_SD22 | UniProtKB/TrEMBL | |
LRR_TYP | UniProtKB/TrEMBL | |
PDZ | UniProtKB/TrEMBL | |
Superfamily-SCOP | L domain-like | UniProtKB/TrEMBL |
Outer arm dynein light chain 1 | UniProtKB/TrEMBL | |
SSF50156 | UniProtKB/TrEMBL | |
UniProt | A0A8I5ZN42 | ENTREZGENE, UniProtKB/TrEMBL |
A0A8I5ZWX2_RAT | UniProtKB/TrEMBL | |
A0A8I6A8N1 | ENTREZGENE, UniProtKB/TrEMBL | |
A0A8I6ACI5 | ENTREZGENE, UniProtKB/TrEMBL | |
A0A8I6AE43 | ENTREZGENE, UniProtKB/TrEMBL | |
M0R9T2_RAT | UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
---|---|---|---|---|---|---|---|
2016-02-24 | Erbin | erbb2 interacting protein | Erbb2ip | erbb2 interacting protein | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2013-12-11 | Erbb2ip | erbb2 interacting protein | RGD1562952 | similar to Erbb2 interacting protein isoform 2 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2013-05-24 | RGD1562952 | similar to Erbb2 interacting protein isoform 2 | LOC100361629 | ERBB2 interacting protein-like | Data merged from RGD:2319743 | 1643240 | APPROVED |
2010-05-05 | LOC100361629 | ERBB2 interacting protein-like | Symbol and Name status set to provisional | 70820 | PROVISIONAL | ||
2008-04-30 | RGD1562952 | similar to Erbb2 interacting protein isoform 2 | RGD1562952_predicted | similar to Erbb2 interacting protein isoform 2 (predicted) | 'predicted' is removed | 2292626 | APPROVED |
2006-03-07 | RGD1562952_predicted | similar to Erbb2 interacting protein isoform 2 (predicted) | LOC365661 | similar to Erbb2 interacting protein isoform 2 | Symbol and Name status set to approved | 1299863 | APPROVED |
2006-02-09 | LOC365661 | similar to Erbb2 interacting protein isoform 2 | Symbol and Name status set to provisional | 70820 | PROVISIONAL |