Erbin (erbb2 interacting protein) - Rat Genome Database

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Gene: Erbin (erbb2 interacting protein) Rattus norvegicus
Analyze
Symbol: Erbin
Name: erbb2 interacting protein
RGD ID: 1562952
Description: Predicted to enable signaling receptor binding activity. Predicted to be involved in several processes, including negative regulation of monocyte chemotactic protein-1 production; negative regulation of nucleotide-binding activity oligomerization domain containing 2 signaling pathway; and protein localization to postsynapse. Predicted to act upstream of or within protein targeting. Is active in glutamatergic synapse; neuromuscular junction; and postsynaptic specialization. Orthologous to human ERBIN (erbb2 interacting protein); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Erbb2 interacting protein isoform 2; ERBB2 interacting protein-like; Erbb2i; Erbb2ip; LOC365661; RGD1562952; similar to Erbb2 interacting protein isoform 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8236,660,399 - 36,762,584 (-)NCBIGRCr8
mRatBN7.2234,926,962 - 35,028,440 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl234,928,863 - 35,027,852 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0233,880,860 - 33,952,806 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl233,881,024 - 33,920,837 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0253,009,485 - 53,110,559 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4234,538,377 - 34,583,203 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera230,906,001 - 31,005,445 (-)NCBICelera
Cytogenetic Map2q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Erbin is a protein concentrated at postsynaptic membranes that interacts with PSD-95. Huang YZ, etal., J Biol Chem. 2001 Jun 1;276(22):19318-26. doi: 10.1074/jbc.M100494200. Epub 2001 Mar 12.
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10878805   PMID:11375975   PMID:16203728   PMID:22564389   PMID:23354328   PMID:25931508  


Genomics

Comparative Map Data
Erbin
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8236,660,399 - 36,762,584 (-)NCBIGRCr8
mRatBN7.2234,926,962 - 35,028,440 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl234,928,863 - 35,027,852 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0233,880,860 - 33,952,806 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl233,881,024 - 33,920,837 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0253,009,485 - 53,110,559 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4234,538,377 - 34,583,203 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera230,906,001 - 31,005,445 (-)NCBICelera
Cytogenetic Map2q13NCBI
ERBIN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38565,926,575 - 66,082,546 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl565,883,128 - 66,082,546 (+)EnsemblGRCh38hg38GRCh38
GRCh37565,222,403 - 65,378,374 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36565,258,140 - 65,412,606 (+)NCBINCBI36Build 36hg18NCBI36
Build 34565,258,139 - 65,412,606NCBI
Celera562,220,805 - 62,374,902 (+)NCBICelera
Cytogenetic Map5q12.3NCBI
HuRef562,180,180 - 62,334,363 (+)NCBIHuRef
CHM1_1565,222,112 - 65,376,958 (+)NCBICHM1_1
T2T-CHM13v2.0566,748,417 - 66,903,759 (+)NCBIT2T-CHM13v2.0
Erbin
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913103,955,294 - 104,057,094 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13103,955,295 - 104,057,022 (-)EnsemblGRCm39 Ensembl
GRCm3813103,818,786 - 103,920,586 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13103,818,787 - 103,920,514 (-)EnsemblGRCm38mm10GRCm38
MGSCv3713104,608,866 - 104,710,594 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613104,939,168 - 105,040,896 (-)NCBIMGSCv36mm8
Celera13108,222,721 - 108,321,451 (-)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1356.16NCBI
Erbin
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554463,049,258 - 3,151,796 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554463,046,268 - 3,151,796 (-)NCBIChiLan1.0ChiLan1.0
ERBIN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2447,845,762 - 47,996,823 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1545,997,294 - 46,149,516 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0547,929,305 - 48,081,381 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1549,589,418 - 49,739,091 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl549,589,418 - 49,676,689 (-)Ensemblpanpan1.1panPan2
ERBIN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1251,613,344 - 51,730,868 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl251,613,230 - 51,729,021 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha248,567,560 - 48,686,069 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0252,103,696 - 52,222,802 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl252,135,404 - 52,222,776 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1249,168,857 - 49,287,569 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0249,951,893 - 50,070,153 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0250,844,564 - 50,963,302 (+)NCBIUU_Cfam_GSD_1.0
Erbin
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213194,218,761 - 194,356,756 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364803,154,690 - 3,293,230 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364803,155,934 - 3,293,224 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ERBIN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1644,415,189 - 44,533,349 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11644,415,106 - 44,533,353 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21647,778,049 - 47,848,711 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ERBIN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1462,123,012 - 62,267,832 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl462,182,705 - 62,268,617 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604910,769,397 - 10,919,930 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Erbin
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248153,768,207 - 3,852,815 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248153,765,261 - 3,901,309 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Erbin
177 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:216
Count of miRNA genes:70
Interacting mature miRNAs:76
Transcripts:ENSRNOT00000070796, ENSRNOT00000071565, ENSRNOT00000074229, ENSRNOT00000075196
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631682Bp115Blood pressure QTL 1154.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2137410502Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777242804738Rat
738012Anxrr3Anxiety related response QTL 33.8exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)2902351954023519Rat
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)21185206249003364Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21649174061491740Rat
1357990Ael1Aortic elastin QTL 13.10.00091aorta elastin amount (VT:0003905)aortic elastin21907682564076825Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22030467265304672Rat
2300168Bmd47Bone mineral density QTL 476.60.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)22066244865662448Rat
10402051Gdil2Gastrointestinal dilation QTL 2enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)22490385374786777Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22691781781754745Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
1331764Bp205Blood pressure QTL 2053.476arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22699957143154682Rat
1643006Pain1Pain QTL 13.630.005mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)22699957148268661Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22715716072157160Rat
1300160Hrtrt3Heart rate QTL 33.62heart pumping trait (VT:2000009)absolute change in heart rate (CMO:0000534)22997159351729300Rat
10755434Coatc7Coat color QTL 70.04794coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23064806575648065Rat
731179Mamtr3Mammary tumor resistance QTL 30.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)23237377043665178Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23502311780023117Rat

Markers in Region
D2Rat11  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2234,938,007 - 34,938,128 (+)MAPPERmRatBN7.2
Rnor_6.0233,891,907 - 33,892,027NCBIRnor6.0
Rnor_5.0253,020,528 - 53,020,648UniSTSRnor5.0
RGSC_v3.4234,551,274 - 34,551,394UniSTSRGSC3.4
RGSC_v3.4234,551,273 - 34,551,394RGDRGSC3.4
RGSC_v3.1234,471,643 - 34,471,763RGD
Celera230,916,917 - 30,917,037UniSTS
RH 3.4 Map2123.4RGD
RH 3.4 Map2123.4UniSTS
RH 2.0 Map2195.6RGD
SHRSP x BN Map215.0498RGD
FHH x ACI Map223.0699RGD
Cytogenetic Map2q12-q13UniSTS
RH128622  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2234,927,621 - 34,927,822 (+)MAPPERmRatBN7.2
Rnor_6.0233,881,520 - 33,881,720NCBIRnor6.0
Rnor_5.0253,010,141 - 53,010,341UniSTSRnor5.0
Celera230,906,657 - 30,906,857UniSTS
RH 3.4 Map2125.2UniSTS
Cytogenetic Map2q12-q13UniSTS
RH131798  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2234,926,714 - 34,926,907 (+)MAPPERmRatBN7.2
Rnor_6.0233,880,613 - 33,880,805NCBIRnor6.0
Rnor_5.0253,009,234 - 53,009,426UniSTSRnor5.0
RGSC_v3.4234,537,045 - 34,537,237UniSTSRGSC3.4
Celera230,905,750 - 30,905,942UniSTS
RH 3.4 Map2129.3UniSTS
Cytogenetic Map2q12-q13UniSTS
G07329  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2234,926,970 - 34,927,141 (+)MAPPERmRatBN7.2
Rnor_6.0233,880,869 - 33,881,039NCBIRnor6.0
Rnor_5.0253,009,490 - 53,009,660UniSTSRnor5.0
RGSC_v3.4234,537,301 - 34,537,471UniSTSRGSC3.4
Celera230,906,006 - 30,906,176UniSTS
Cytogenetic Map2q12-q13UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 41 55 39 19 39 8 10 74 35 38 11 8
Low 2 2 2 2 1 3
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000075196   ⟹   ENSRNOP00000066263
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl234,928,863 - 34,964,499 (-)Ensembl
Rnor_6.0 Ensembl233,881,024 - 33,920,837 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000095613   ⟹   ENSRNOP00000088858
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl234,928,863 - 35,027,779 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000096272   ⟹   ENSRNOP00000090634
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl234,928,863 - 35,027,779 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000098587   ⟹   ENSRNOP00000091667
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl234,928,863 - 35,027,779 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000118167   ⟹   ENSRNOP00000079671
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl234,940,064 - 35,027,852 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000118358   ⟹   ENSRNOP00000083915
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl234,928,863 - 35,027,852 (-)Ensembl
RefSeq Acc Id: NM_001427815   ⟹   NP_001414744
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8236,660,399 - 36,762,153 (-)NCBI
RefSeq Acc Id: XM_017591179   ⟹   XP_017446668
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8236,660,785 - 36,762,584 (-)NCBI
mRatBN7.2234,926,962 - 35,027,544 (-)NCBI
Rnor_6.0233,880,860 - 33,935,294 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017591180   ⟹   XP_017446669
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8236,660,785 - 36,762,584 (-)NCBI
mRatBN7.2234,926,966 - 35,028,440 (-)NCBI
Rnor_6.0233,880,860 - 33,935,294 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017591181   ⟹   XP_017446670
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8236,660,785 - 36,762,584 (-)NCBI
mRatBN7.2234,926,966 - 35,028,438 (-)NCBI
Rnor_6.0233,880,860 - 33,935,294 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017591184   ⟹   XP_017446673
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8236,660,785 - 36,762,584 (-)NCBI
mRatBN7.2234,926,966 - 35,028,435 (-)NCBI
Rnor_6.0233,880,860 - 33,935,294 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039103490   ⟹   XP_038959418
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8236,660,785 - 36,762,584 (-)NCBI
mRatBN7.2234,926,966 - 35,028,438 (-)NCBI
RefSeq Acc Id: XM_039103491   ⟹   XP_038959419
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8236,660,785 - 36,743,905 (-)NCBI
mRatBN7.2234,926,962 - 35,010,109 (-)NCBI
RefSeq Acc Id: XM_039103492   ⟹   XP_038959420
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8236,660,785 - 36,762,584 (-)NCBI
mRatBN7.2234,926,966 - 35,028,436 (-)NCBI
RefSeq Acc Id: XM_063282243   ⟹   XP_063138313
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8236,660,785 - 36,762,584 (-)NCBI
RefSeq Acc Id: XM_063282244   ⟹   XP_063138314
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8236,660,785 - 36,762,584 (-)NCBI
RefSeq Acc Id: XM_063282245   ⟹   XP_063138315
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8236,660,785 - 36,762,584 (-)NCBI
RefSeq Acc Id: XM_063282246   ⟹   XP_063138316
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8236,660,785 - 36,762,584 (-)NCBI
RefSeq Acc Id: XM_063282247   ⟹   XP_063138317
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8236,660,785 - 36,730,150 (-)NCBI
RefSeq Acc Id: XP_017446669   ⟸   XM_017591180
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZN42 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017446673   ⟸   XM_017591184
- Peptide Label: isoform X6
- UniProtKB: A0A8I6ACI5 (UniProtKB/TrEMBL),   A0A8I5ZN42 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017446670   ⟸   XM_017591181
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZN42 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017446668   ⟸   XM_017591179
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AE43 (UniProtKB/TrEMBL),   A0A8I5ZN42 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000066263   ⟸   ENSRNOT00000075196
RefSeq Acc Id: XP_038959419   ⟸   XM_039103491
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AE43 (UniProtKB/TrEMBL),   A0A8I5ZN42 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959418   ⟸   XM_039103490
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AE43 (UniProtKB/TrEMBL),   A0A8I5ZN42 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959420   ⟸   XM_039103492
- Peptide Label: isoform X8
- UniProtKB: A0A8I6A8N1 (UniProtKB/TrEMBL),   A0A8I5ZN42 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000088858   ⟸   ENSRNOT00000095613
RefSeq Acc Id: ENSRNOP00000090634   ⟸   ENSRNOT00000096272
RefSeq Acc Id: ENSRNOP00000083915   ⟸   ENSRNOT00000118358
RefSeq Acc Id: ENSRNOP00000091667   ⟸   ENSRNOT00000098587
RefSeq Acc Id: ENSRNOP00000079671   ⟸   ENSRNOT00000118167
RefSeq Acc Id: NP_001414744   ⟸   NM_001427815
- Peptide Label: isoform 2
RefSeq Acc Id: XP_063138316   ⟸   XM_063282246
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063138315   ⟸   XM_063282245
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063138314   ⟸   XM_063282244
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063138313   ⟸   XM_063282243
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063138317   ⟸   XM_063282247
- Peptide Label: isoform X10
Protein Domains
PDZ

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R9T2-F1-model_v2 AlphaFold M0R9T2 1-1258 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562952 AgrOrtholog
BioCyc Gene G2FUF-54562 BioCyc
Ensembl Genes ENSRNOG00000047137 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000075196.4 UniProtKB/TrEMBL
  ENSRNOT00000095613.1 UniProtKB/TrEMBL
  ENSRNOT00000096272.1 UniProtKB/TrEMBL
  ENSRNOT00000098587.1 UniProtKB/TrEMBL
  ENSRNOT00000118167.1 UniProtKB/TrEMBL
  ENSRNOT00000118358.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.42.10 UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/TrEMBL
InterPro L_dom-like UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PDZ_sf UniProtKB/TrEMBL
NCBI Gene 365661 ENTREZGENE
PANTHER DISCS LARGE UniProtKB/TrEMBL
  PTHR23119:SF46 UniProtKB/TrEMBL
Pfam LRR_8 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
PhenoGen Erbin PhenoGen
PROSITE LRR UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
RatGTEx ENSRNOG00000047137 RatGTEx
SMART LRR_BAC UniProtKB/TrEMBL
  LRR_SD22 UniProtKB/TrEMBL
  LRR_TYP UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
  Outer arm dynein light chain 1 UniProtKB/TrEMBL
  SSF50156 UniProtKB/TrEMBL
UniProt A0A8I5ZN42 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZWX2_RAT UniProtKB/TrEMBL
  A0A8I6A8N1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ACI5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AE43 ENTREZGENE, UniProtKB/TrEMBL
  M0R9T2_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-24 Erbin  erbb2 interacting protein  Erbb2ip  erbb2 interacting protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-12-11 Erbb2ip  erbb2 interacting protein  RGD1562952  similar to Erbb2 interacting protein isoform 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-05-24 RGD1562952  similar to Erbb2 interacting protein isoform 2  LOC100361629  ERBB2 interacting protein-like  Data merged from RGD:2319743 1643240 APPROVED
2010-05-05 LOC100361629  ERBB2 interacting protein-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 RGD1562952  similar to Erbb2 interacting protein isoform 2   RGD1562952_predicted  similar to Erbb2 interacting protein isoform 2 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1562952_predicted  similar to Erbb2 interacting protein isoform 2 (predicted)  LOC365661  similar to Erbb2 interacting protein isoform 2  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC365661  similar to Erbb2 interacting protein isoform 2      Symbol and Name status set to provisional 70820 PROVISIONAL