S100pbp (S100P binding protein) - Rat Genome Database

Name: S100pbp
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: S100pbp (S100P binding protein) Rattus norvegicus

Analyze

Symbol:

S100pbp

Name:

S100P binding protein

RGD ID:

1564943

Description:

Predicted to enable calcium-dependent protein binding activity. Predicted to be located in nuclear speck. Predicted to be active in cytosol and nucleus. Orthologous to human S100PBP (S100P binding protein); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

hypothetical protein LOC500551; LOC500551; RGD1564943; S100P-binding protein; similar to 4930429A08Rik protein; uncharacterized protein LOC500551

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	S100PBP (S100P binding protein)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	S100pbp (S100P binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	S100pbp (S100P binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	S100PBP (S100P binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	S100PBP (S100P binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	S100pbp (S100P binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	S100PBP (S100P binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	S100PBP (S100P binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	S100pbp (S100P binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	S100PBP (S100P binding protein)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	S100pbp (S100P binding protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	s100pbp	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	146,778,706 - 146,820,223 (-)	NCBI		GRCr8
mRatBN7.2	5	141,494,352 - 141,535,752 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	141,494,353 - 141,535,525 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	144,193,702 - 144,233,346 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	145,963,523 - 146,003,167 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	145,963,008 - 146,002,764 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	147,333,890 - 147,375,151 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	147,335,242 - 147,375,009 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	151,068,331 - 151,109,662 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	148,309,348 - 148,350,022 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	139,975,369 - 140,015,250 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Charcot-Marie-Tooth disease dominant intermediate C (ISO)

genetic disease (ISO)

Infantile-Onset Multisystem Neurologic, Endocrine, and Pancreatic Disease 1 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dichloroethane (ISO)

17alpha-ethynylestradiol (EXP)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (EXP)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

butanal (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

copper(II) sulfate (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

FR900359 (ISO)

hydralazine (ISO)

indole-3-methanol (EXP)

methimazole (EXP)

PCB138 (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenylmercury acetate (ISO)

potassium chromate (ISO)

SB 431542 (ISO)

sulfadimethoxine (EXP)

tert-butyl hydroperoxide (ISO)

trimellitic anhydride (ISO)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytosol (IBA,ISO)

nuclear speck (IEA,ISO)

nucleus (IBA,ISO)

Molecular Function

calcium-dependent protein binding (IBA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:15632002

Genomics

Comparative Map Data

S100pbp
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	146,778,706 - 146,820,223 (-)	NCBI		GRCr8
mRatBN7.2	5	141,494,352 - 141,535,752 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	141,494,353 - 141,535,525 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	144,193,702 - 144,233,346 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	145,963,523 - 146,003,167 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	145,963,008 - 146,002,764 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	147,333,890 - 147,375,151 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	147,335,242 - 147,375,009 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	151,068,331 - 151,109,662 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	148,309,348 - 148,350,022 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	139,975,369 - 140,015,250 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

S100PBP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	32,816,562 - 32,858,879 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	32,816,767 - 32,858,875 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	33,283,043 - 33,324,480 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	33,055,763 - 33,097,063 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	31,551,826 - 31,593,116 (+)	NCBI		Celera
Cytogenetic Map	1	p35.1	NCBI
HuRef	1	31,398,610 - 31,440,093 (+)	NCBI		HuRef
CHM1_1	1	33,398,438 - 33,439,875 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	32,673,499 - 32,718,671 (+)	NCBI		T2T-CHM13v2.0

S100pbp
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	129,041,795 - 129,083,485 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	129,041,798 - 129,083,520 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	129,148,002 - 129,189,665 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	129,148,005 - 129,189,727 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	128,828,069 - 128,866,726 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	128,653,129 - 128,691,786 (-)	NCBI		MGSCv36	mm8
Celera	4	127,490,993 - 127,529,445 (-)	NCBI		Celera
Cytogenetic Map	4	D2.2	NCBI
cM Map	4	62.96	NCBI

S100pbp
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	11,082,731 - 11,113,934 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955452	11,078,170 - 11,114,061 (+)	NCBI	ChiLan1.0	ChiLan1.0

S100PBP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	193,963,390 - 194,004,790 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	193,085,594 - 193,126,948 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	32,108,070 - 32,149,433 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	33,294,723 - 33,335,495 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	33,295,373 - 33,335,495 (+)	Ensembl	panpan1.1		panPan2

S100PBP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	68,495,783 - 68,535,847 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	68,496,880 - 68,535,609 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	65,074,982 - 65,129,560 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	69,060,219 - 69,114,793 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	69,062,009 - 69,114,777 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	65,871,735 - 65,926,289 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	66,894,171 - 66,948,741 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	67,886,094 - 67,940,661 (-)	NCBI		UU_Cfam_GSD_1.0

S100pbp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	49,896,707 - 49,938,661 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	15,721,461 - 15,763,903 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	15,721,520 - 15,763,443 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

S100PBP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	89,122,469 - 89,160,045 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	89,119,003 - 89,160,050 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	83,145,918 - 83,187,300 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

S100PBP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	100,006,433 - 100,052,518 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	100,010,882 - 100,052,417 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	16,639,542 - 16,681,170 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

S100pbp
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624764	15,941,695 - 15,966,572 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624764	15,931,755 - 15,966,350 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in S100pbp
93 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	303
Count of miRNA genes:	166
Interacting mature miRNAs:	212
Transcripts:	ENSRNOT00000009436
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	35189153	141643988	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	40128307	148607290	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	46711509	161317411	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	50328551	141643988	Rat
61426	Scl2	Serum cholesterol level QTL 2	7.3	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	59793399	143070159	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	60293434	161481680	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	69540295	151018848	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	82394392	166664054	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	94858972	143070159	Rat
1331796	Thshl2	Thyroid stimulating hormone level QTL 2	2.3		blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	5	97059760	147465714	Rat
1358187	Emca1	Estrogen-induced mammary cancer QTL 1	4.4		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	5	99216724	148607142	Rat
1578673	Bmd13	Bone mineral density QTL 13	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	5	103689353	148689353	Rat
2317056	Wbc3	White blood cell count QTL 3	2.51	0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	5	105999803	150999803	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	106906205	151906205	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	106906205	151906205	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	106906205	151906205	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	106906205	151906205	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	106906205	151906205	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	108845856	153845856	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	108845856	153845856	Rat
8657050	Bw146	Body weight QTL 146	19.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	108938288	153938288	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	111416838	156416838	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	111416838	156416838	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	111416838	156416838	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	111416838	156416838	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	120740824	143608494	Rat
2293642	Bss37	Bone structure and strength QTL 37	4.64	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	120740824	151018848	Rat
1641920	Colcs1	Colorectal carcinoma susceptibility QTL 1	2.99	0.0055	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	5	121846814	166846814	Rat
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	124965598	166875058	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	126424772	166875058	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	127798274	166875058	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	127798274	166875058	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	128506074	166875058	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	128506074	166875058	Rat
634349	Bp139	Blood pressure QTL 139		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	128924607	166875058	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	129132428	143070159	Rat
70156	Niddm30	Non-insulin dependent diabetes mellitus QTL 30	3.98		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	5	129132447	151006154	Rat
738018	Anxrr4	Anxiety related response QTL 4	5.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	5	130130159	166875058	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	131345754	166875058	Rat
631505	Bp103	Blood pressure QTL 103	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	132717196	165560427	Rat
631562	Apr2	Acute phase response QTL 2	3.7		blood murinoglobulin 1 amount (VT:0010597)	plasma murinoglobulin 1 level (CMO:0001931)	5	135927956	166875058	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	135929696	166875058	Rat

Markers in Region

RH142596

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	141,536,271 - 141,536,381 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	147,375,807 - 147,375,916	NCBI	Rnor6.0
Rnor_5.0	5	151,110,424 - 151,110,533	UniSTS	Rnor5.0
RGSC_v3.4	5	148,350,820 - 148,350,929	UniSTS	RGSC3.4
Celera	5	140,016,049 - 140,016,158	UniSTS
RH 3.4 Map	5	957.6	UniSTS
Cytogenetic Map	5	q36	UniSTS

RH139129

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	141,526,291 - 141,526,433 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	147,365,829 - 147,365,970	NCBI	Rnor6.0
Rnor_5.0	5	151,100,446 - 151,100,587	UniSTS	Rnor5.0
RGSC_v3.4	5	148,340,842 - 148,340,983	UniSTS	RGSC3.4
Celera	5	140,006,070 - 140,006,211	UniSTS
RH 3.4 Map	5	959.61	UniSTS
Cytogenetic Map	5	q36	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2	26	38	22	19	22	1	1	74	28	39	11	1
Low	1	17	19	19		19	7	10		7	2		7
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001134628	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238956	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238959	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238961	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238962	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238963	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764162	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764163	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764164	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110609	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288258	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288259	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288260	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288261	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288262	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288263	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288264	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC141171	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000009436 ⟹ ENSRNOP00000009436

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	141,494,358 - 141,535,525 (-)	Ensembl
Rnor_6.0 Ensembl	5	147,335,242 - 147,375,009 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000094547 ⟹ ENSRNOP00000080960

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	141,494,353 - 141,527,877 (-)	Ensembl

RefSeq Acc Id:

NM_001134628 ⟹ NP_001128100

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	146,780,061 - 146,819,822 (-)	NCBI
mRatBN7.2	5	141,495,707 - 141,535,474 (-)	NCBI
Rnor_6.0	5	147,335,242 - 147,375,009 (-)	NCBI
Rnor_5.0	5	151,068,331 - 151,109,662 (-)	NCBI
RGSC_v3.4	5	148,309,348 - 148,350,022 (-)	RGD
Celera	5	139,975,369 - 140,015,250 (-)	RGD

Sequence:

show sequence

CGTCTAGGCTAGGGGTCGGGGGCGCCTGTTGCTTCTTCACAGGGCCGCGTACGTCGTCTTCCCC
CGTGAGGAGCAGGGAAGCTCGTCTCGCTGAGGGAAGGGCTGATTCTCCCTCCTGAGGAAGGTGG
GAGTCAATCACTTTGACAAGTCTCCTGAAAGGAACAGCCAGCAGGAGTTGAAACCTTTTTCCAT
TTGGTCTCGTGGCAAAGGCAGAGATTGCTCCAGCAGCTCCACACAATATGACGTGCTCACTATT
ACCCTCTGAACAGTCTTCTGGTACCTCTTTTCTGCCTAAAGACAATGCCTCATTTTCTTGGGGT
TCCTCGGATGAAGATGAGTTGGATGACTCCTTGTTGGAGTTTTCTGACGGAGAAGAAGATGATG
GCCATTTCAGTTTCACAGAAGAAGAGATTGAGATGCTCTTGAAGGACGATGATGGTGGGCATAA
TGAGTATAGAGCGAGAAAGAGTCAAATTCTACCCCATACTCCTCAAGAAAATTCTTTGTACAGC
TTGGGACCAGCAGCTGAAACCCCTGGCTTCCTCAAACTACCTCAACTAAGTCCATCAGTTGGTC
ATGGGCCAACTCCTAGTAAATCATTAAACAGACACTTTGTACTTGAAAAGAATCTTATAAAAGT
AACTGTTGTTGCACCATTTAATCCAACAGTTTGTGATCCTGTGCTTGATAAAGACAAGATCGAT
TCCTCCAAAGAAACGGAAAAACCTGCCTCCCTTCAGGAACAGACGAGAGAAGACGATCTTCATC
CTAATGAGAGTAAACGTTGCACTGAACCTGAAGGGGTCAGTCCCAATAACTCTGCTTGGGATGG
GCCCCTGCTTTCTTCTCCTTCAAATAATAACATCGAACAAACTGCCTCAGATAAAAATATACCT
GAAAGTAAGAAACCTACCCCTGTGTTCTCTCAGATCTCCAACCATTCAGAAGTACCCAACAGGA
AAAATAGTGGATCACACAAATCAGGTTGTGAAGTGAGAATTCCAGTTGTGTCCAGTTCATCAAA
CAGACATGCCTTTGACAAGGATTCTGGGGAGGCGAAAGGTGAGAGAAGACTAGGCAAAGTCATC
CCTGTGCTACAAACCAGGACTAGGATGTTTTCACAATCAGATCTAGAAAAACAGAAGGACATTT
ATCTCAGCAAAGTCATTGCTCATATAGAAGACCCAGGGGACTCTAACCAAGGTGCCTTGGGAGA
GCTCGATGCTCTGATGGATCAAGTTCATATGCAGAACCCAGACTGGCAGCATCCTTCAGATCTT
ACCACACGAAATTATGCCCGGTTCCGACAGCGACCTCTGCAGAGATACAGTCTGAGTCAGTGGG
TTGACAGAAACAAGCGGAGCCACCACCGTTTCCAGCGCCTCCCAGACTTCTCATACAGTCCCTA
TGTTTCACCCCATCCACAGTGACCGCCCCACCCAGGACTCTCCACAGCAGCACCGTACTCCTCT
GCCATTTGTGTTTGTATATTTTGAGTTTTATTTTTCACAAGATTTTTATTTAAAGAATTTGTCA
ACTTTTGGAAGTGCCCATTACTGTCTTGAATTTTTTTTTTTTTTTAAATGAGGGCCACCTCCGC
ATCCCTGGTTTGTGTCCGTCTGTTGTACATGTTCAGCAATGTTAAGCAGTGTTTTTCTGTTTGT
TCTTTGTTGTTGCTGCTGCTGTTTTAAAATTTAAAATGAAAGTGATTCCCTTCTGAAGGCCTGT
GACAAGTCAGAACAGCTGTAAGCACAGGCAGTCTTGTTCAACCGGAACGAAGTATCTTTCCGTC
TGCTGTGAGGAGGAGGTTGTTGTGCAGGCTAAGGGCCGGTGTTAGTATTGTTGACTTGTGAATA
GATAGAGGTCACTTTTAACAGCCCCTCTTTTTAAATCTGAGTTTCTTGAATACTTGTCAGTATT
TTAATGTTGCCAATTCAGTACATTTGAAATAGGATAGAGCTGTGGTTGTGCTTCCGCGGTGCGG
GGCTCTTCTGCTGGCCTCTGAGCCAGAAATTTAAAAAAAAAAAAAAGAGAAATAGTATAGAGAG
GGAGAAAAGTCCTGTTGCAAGGATAGATTAAAAATGTAAATCCTCTCCTTTCTGTACCTATTAG
CTGCCTTTAAAAAAATTATTATTAATGGCTCCTTTCACTCTCTGTTAAATATCTTTTGTTCATA
ATGTTTGAAATCTTATACATCTTAACTGACAGAAGACAGCTGACTAATCCTTGTGGTTCTCCGT
GGTCTTGTGACTGGTTGATCTCTGCCCCTTTTCAGAGTTAAGAGGCGCCTAGGGATCTTTGATT
TCTTCTGCCCCAAGTTCATGTGTTGCTGCTAATCAAGGGACCTTTTCCTATGAAATCCTTCGGG
AGTCACGCTTGCCTCTCCTGTTGGTACAGGTACCCTTTATACCCTGCGTGTTAGTTAGTGTTGT
GGCTTTTGGTCCCTTGTTTCACATTAGTACCGGAGCAGCTGGGCAAAGTATGATTGAGCCCTGC
ACCACAACCTCACCTACTCTAGAGTAAGGGGTGGTGTTCCAGCCAACGCTGACAGGCTCTGTGT
ACTGTCTTAATGGATGTCTTAGAAGATCTGTACTTCTTACAGGCAGCTCTAGACGACATTCTGA
GAGGGTTGACTGTATGACATTGCTGCTGCGGCCGTCACTCTGAAGTGACTCAGAGTAGCCTAGC
CTCTGTCTGCTTTTCTTTCTGTAGTCCCATCTTATATGTGGCTAACCCACCCTAAGTAGTCTAC
TCCACTTCAGAAAAGTGATCTTTTTGTTCTGTTTTGTTTTTATTTTTCAAGATAGGGTTTCTTT
GTATACTCCTGGCTGCCCTGGAACTCATTCTGTAGACCATGCTGGTCTTAACTCACAGAGATCT
GCCTGCCTTGCCTTCCGACTACTGGGATTAAAGGCGTGGATCACCACTCTTTGGCTAAATAAGT
GACCGTGATT

hide sequence

RefSeq Acc Id:

XM_006238956 ⟹ XP_006239018

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	146,778,706 - 146,819,989 (-)	NCBI
mRatBN7.2	5	141,494,352 - 141,535,659 (-)	NCBI
Rnor_6.0	5	147,333,890 - 147,375,142 (-)	NCBI
Rnor_5.0	5	151,068,331 - 151,109,662 (-)	NCBI

Sequence:

show sequence

GCCTCGGGGTGGGGGAGGTCGTGAAGGGGGCGATAAAATGGCGCAGGGGGCGGAGTGAGGTGCT
GCCGCTCGCCCAGGCTTTGGCCCGGCTTCCGGAGGAAGGTGGGAGTCAATCACTTTGACAAGTC
TCCTGAAAGGAACAGCCAGCAGGAGTTGAAACCTTTTTCCATTTGGTCTCGTGGCAAAGGCAGA
GATTGCTCCAGCAGCTCCACACAATATGACGTGCTCACTATTACCCTCTGAACAGTCTTCTGGT
ACCTCTTTTCTGCCTAAAGACAATGCCTCATTTTCTTGGGGTTCCTCGGATGAAGATGAGTTGG
ATGACTCCTTGTTGGAGTTTTCTGACGGAGAAGAAGATGATGGCCATTTCAGTTTCACAGAAGA
AGAGATTGAGATGCTCTTGAAGGACGATGATGGTGGGCATAATGAGTATAGAGCGAGAAAGAGT
CAAATTCTACCCCATACTCCTCAAGAAAATTCTTTGTACAGCTTGGGACCAGCAGCTGAAACCC
CTGGCTTCCTCAAACTACCTCAACTAAGTCCATCAGTTGGTCATGGGCCAACTCCTAGTAAATC
ATTAAACAGACACTTTGTACTTGAAAAGAATCTTATAAAAGTAACTGTTGTTGCACCATTTAAT
CCAACAGTTTGTGATCCTGTGCTTGATAAAGACAAGATCGATTCCTCCAAAGAAACGGAAAAAC
CTGCCTCCCTTCAGGAACAGACGAGAGAAGACGATCTTCATCCTAATGAGAGTAAACGTTGCAC
TGAACCTGAAGGGGTCAGTCCCAATAACTCTGCTTGGGATGGGCCCCTGCTTTCTTCTCCTTCA
AATAATAACATCGAACAAACTGCCTCAGATAAAAATATACCTGAAAGTAAGAAACCTACCCCTG
TGTTCTCTCAGATCTCCAACCATTCAGAAGTACCCAACAGGAAAAATAGTGGATCACACAAATC
AGGTTGTGAAGTGAGAATTCCAGTTGTGTCCAGTTCATCAAACAGACATGCCTTTGACAAGGAT
TCTGGGGAGGCGAAAGGTGAGAGAAGACTAGGCAAAGTCATCCCTGTGCTACAAACCAGGACTA
GGATGTTTTCACAATCAGATCTAGAAAAACAGAAGGACATTTATCTCAGCAAAGTCATTGCTCA
TATAGAAGACCCAGGGGACTCTAACCAAGGTGCCTTGGGAGAGCTCGATGCTCTGATGGATCAA
GTTCATATGCAGAACCCAGACTGGCAGCATCCTTCAGATCTTACCACACGAAATTATGCCCGGT
TCCGACAGCGACCTCTGCAGAGATACAGTCTGAGTCAGTGGGTTGACAGAAACAAGCGGAGCCA
CCACCGTTTCCAGCGCCTCCCAGACTTCTCATACAGTCCCTATGTTTCACCCCATCCACAGTGA
CCGCCCCACCCAGGACTCTCCACAGCAGCACCGTACTCCTCTGCCATTTGTGTTTGTATATTTT
GAGTTTTATTTTTCACAAGATTTTTATTTAAAGAATTTGTCAACTTTTGGAAGTGCCCATTACT
GTCTTGAATTTTTTTTTTTTTTTAAATGAGGGCCACCTCCGCATCCCTGGTTTGTGTCCGTCTG
TTGTACATGTTCAGCAATGTTAAGCAGTGTTTTTCTGTTTGTTCTTTGTTGTTGCTGCTGCTGT
TTTAAAATTTAAAATGAAAGTGATTCCCTTCTGAAGGCCTGTGACAAGTCAGAACAGCTGTAAG
CACAGGCAGTCTTGTTCAACCGGAACGAAGTATCTTTCCGTCTGCTGTGAGGAGGAGGTTGTTG
TGCAGGCTAAGGGCCGGTGTTAGTATTGTTGACTTGTGAATAGATAGAGGTCACTTTTAACAGC
CCCTCTTTTTAAATCTGAGTTTCTTGAATACTTGTCAGTATTTTAATGTTGCCAATTCAGTACA
TTTGAAATAGGATAGAGCTGTGGTTGTGCTTCCGCGGTGCGGGGCTCTTCTGCTGGCCTCTGAG
CCAGAAATTTAAAAAAAAAAAAAAGAGAAATAGTATAGAGAGGGAGAAAAGTCCTGTTGCAAGG
ATAGATTAAAAATGTAAATCCTCTCCTTTCTGTACCTATTAGCTGCCTTTAAAAAAATTATTAT
TAATGGCTCCTTTCACTCTCTGTTAAATATCTTTTGTTCATAATGTTTGAAATCTTATACATCT
TAACTGACAGAAGACAGCTGACTAATCCTTGTGGTTCTCCGTGGTCTTGTGACTGGTTGATCTC
TGCCCCTTTTCAGAGTTAAGAGGCGCCTAGGGATCTTTGATTTCTTCTGCCCCAAGTTCATGTG
TTGCTGCTAATCAAGGGACCTTTTCCTATGAAATCCTTCGGGAGTCACGCTTGCCTCTCCTGTT
GGTACAGGTACCCTTTATACCCTGCGTGTTAGTTAGTGTTGTGGCTTTTGGTCCCTTGTTTCAC
ATTAGTACCGGAGCAGCTGGGCAAAGTATGATTGAGCCCTGCACCACAACCTCACCTACTCTAG
AGTAAGGGGTGGTGTTCCAGCCAACGCTGACAGGCTCTGTGTACTGTCTTAATGGATGTCTTAG
AAGATCTGTACTTCTTACAGGCAGCTCTAGACGACATTCTGAGAGGGTTGACTGTATGACATTG
CTGCTGCGGCCGTCACTCTGAAGTGACTCAGAGTAGCCTAGCCTCTGTCTGCTTTTCTTTCTGT
AGTCCCATCTTATATGTGGCTAACCCACCCTAAGTAGTCTACTCCACTTCAGAAAAGTGATCTT
TTTGTTCTGTTTTGTTTTTATTTTTCAAGATAGGGTTTCTTTGTATACTCCTGGCTGCCCTGGA
ACTCATTCTGTAGACCATGCTGGTCTTAACTCACAGAGATCTGCCTGCCTTGCCTTCCGACTAC
TGGGATTAAAGGCGTGGATCACCACTCTTTGGCTAAATAAGTGACCGTGATTAGGAAAATCTTG
ATTTTGTTTGTTTTGTTTTCAACCCCTTAGTAGGTTTGGATAAATGTTCCCAAGTGTTTGTTAG
TTTTATCCAGTGAAGGATTTTTCTTCCTTACTTACCTTTTTTTGTGGCAGGGTCTCCTGTAAAG
CCTAGGCTAGCCTTCAACCCACTATTTAGCCCAAGATGGTCTGCACTTCTGATTTTTCAGCCCT
GCCTCTCAAGTGCTAGGATTGAAGGTGAGCACCATCATGCCCTCCCTCCAGCCCCCACCCCAAG
ATGGGTTTTTGTGTATCCCTCCTGACTGGGTAGACCAGGCAGGCCTCAGAACTCAGAGATTCGC
CTGCCTCTGCCTCCTTAGTGCTGGGATTAAAGGTGTACACGCCCTGCTTTTGACTTTTTTTTTC
CCCCAGAAAGAATTTTCTGTTCCTTAGTTCTTTGGTTTAGATTCTGGGACTAGAGTTTGGAAGG
CAAAATAGTCCAGTTGCCTCTCTTGGTGGGCACAGTTGTCGTTGGCCTCAGTGGTCACTTGTCC
AAGCTGCTGTAAATTAGCCTGATAGAATGGCATATGCCAAACAATCCACTTTGGGACCAAAACA
AAGCTCAAAGTCAGTATCGCTGGTGGCTGACGTTCCCCACGGGTGCCCCAGAGAGTGAAGGGAC
AGCATTTTGCGTAGGCAAAACTCTGATATGTTCCTGCTCTCCTGGCACCAGGAGGAATTAAGAC
TGAATGTATAATGGGAGCATCGCCTTTGCCAAATGAGATGAGTGACAGGTTAACTAGAAATGTG
ACAATCACATTTCCTGTAGCTCAGATGATTCTGTTCTTCCAAAGTGTTAGCAGCCTAATTAAAT
CTGGTGGACGGGGGGTGGGGAGGGAGCTATTCTGTAGTGGTTAACATGGTATTCTTTAAGGAGA
AAAAAGCCAAAGAGAACTCGTCTGGCTTCTTAGCCTTTAAGATGGTAATGGGCAGAACCTGGGG
TTTAATCTCTTCAGAGCTGCACATCTTGTACGTTTGAGATTGGCCTCTAAGTCTTGTATTGCAG
ATTAAATTGTTGCTGTCTTTTTAAATTTGAGTGAGGGTTATGTGCATTTAACTGTGTACCTGTG
TTTTATCATCCCCAGGACATTCTTACCATAGGGGTCTTGACACAGCAAAGTAAAAATGTGTGTT
TGTAAATAGTTACTTGTAAGTAAGGAGTCTAAATAACAATAGTTTTGCATCTAATCTGGGCTCC
GATATACTTGCATTGTTGTCAGGGTCAATTATGAAACAAGTTTGGTGCCTCCTTTTTTATCATG
TTTCCCCTTGTAGCGGTTGTGTTTAATGTCATTAAAAAGAAATAAAAGTTCTCATCAGTG

hide sequence

RefSeq Acc Id:

XM_006238957 ⟹ XP_006239019

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	146,778,706 - 146,814,294 (-)	NCBI
mRatBN7.2	5	141,494,352 - 141,530,562 (-)	NCBI
Rnor_6.0	5	147,333,890 - 147,369,450 (-)	NCBI
Rnor_5.0	5	151,068,331 - 151,109,662 (-)	NCBI

Sequence:

show sequence

GTACAAATCGAGTTCCAGGACAACCAGGGCTACACAGAGAAACCTTGTCTCGAAAAAACAAACA
AACGAATGAAGGAACCAGCTATAAAGGAAGCCAAGTGAAGAGGAAGGTGGGAGTCAATCACTTT
GACAAGTCTCCTGAAAGGAACAGCCAGCAGGAGTTGAAACCTTTTTCCATTTGGTCTCGTGGCA
AAGGCAGAGATTGCTCCAGCAGCTCCACACAATATGACGTGCTCACTATTACCCTCTGAACAGT
CTTCTGGTACCTCTTTTCTGCCTAAAGACAATGCCTCATTTTCTTGGGGTTCCTCGGATGAAGA
TGAGTTGGATGACTCCTTGTTGGAGTTTTCTGACGGAGAAGAAGATGATGGCCATTTCAGTTTC
ACAGAAGAAGAGATTGAGATGCTCTTGAAGGACGATGATGGTGGGCATAATGAGTATAGAGCGA
GAAAGAGTCAAATTCTACCCCATACTCCTCAAGAAAATTCTTTGTACAGCTTGGGACCAGCAGC
TGAAACCCCTGGCTTCCTCAAACTACCTCAACTAAGTCCATCAGTTGGTCATGGGCCAACTCCT
AGTAAATCATTAAACAGACACTTTGTACTTGAAAAGAATCTTATAAAAGTAACTGTTGTTGCAC
CATTTAATCCAACAGTTTGTGATCCTGTGCTTGATAAAGACAAGATCGATTCCTCCAAAGAAAC
GGAAAAACCTGCCTCCCTTCAGGAACAGACGAGAGAAGACGATCTTCATCCTAATGAGAGTAAA
CGTTGCACTGAACCTGAAGGGGTCAGTCCCAATAACTCTGCTTGGGATGGGCCCCTGCTTTCTT
CTCCTTCAAATAATAACATCGAACAAACTGCCTCAGATAAAAATATACCTGAAAGTAAGAAACC
TACCCCTGTGTTCTCTCAGATCTCCAACCATTCAGAAGTACCCAACAGGAAAAATAGTGGATCA
CACAAATCAGGTTGTGAAGTGAGAATTCCAGTTGTGTCCAGTTCATCAAACAGACATGCCTTTG
ACAAGGATTCTGGGGAGGCGAAAGGTGAGAGAAGACTAGGCAAAGTCATCCCTGTGCTACAAAC
CAGGACTAGGATGTTTTCACAATCAGATCTAGAAAAACAGAAGGACATTTATCTCAGCAAAGTC
ATTGCTCATATAGAAGACCCAGGGGACTCTAACCAAGGTGCCTTGGGAGAGCTCGATGCTCTGA
TGGATCAAGTTCATATGCAGAACCCAGACTGGCAGCATCCTTCAGATCTTACCACACGAAATTA
TGCCCGGTTCCGACAGCGACCTCTGCAGAGATACAGTCTGAGTCAGTGGGTTGACAGAAACAAG
CGGAGCCACCACCGTTTCCAGCGCCTCCCAGACTTCTCATACAGTCCCTATGTTTCACCCCATC
CACAGTGACCGCCCCACCCAGGACTCTCCACAGCAGCACCGTACTCCTCTGCCATTTGTGTTTG
TATATTTTGAGTTTTATTTTTCACAAGATTTTTATTTAAAGAATTTGTCAACTTTTGGAAGTGC
CCATTACTGTCTTGAATTTTTTTTTTTTTTTAAATGAGGGCCACCTCCGCATCCCTGGTTTGTG
TCCGTCTGTTGTACATGTTCAGCAATGTTAAGCAGTGTTTTTCTGTTTGTTCTTTGTTGTTGCT
GCTGCTGTTTTAAAATTTAAAATGAAAGTGATTCCCTTCTGAAGGCCTGTGACAAGTCAGAACA
GCTGTAAGCACAGGCAGTCTTGTTCAACCGGAACGAAGTATCTTTCCGTCTGCTGTGAGGAGGA
GGTTGTTGTGCAGGCTAAGGGCCGGTGTTAGTATTGTTGACTTGTGAATAGATAGAGGTCACTT
TTAACAGCCCCTCTTTTTAAATCTGAGTTTCTTGAATACTTGTCAGTATTTTAATGTTGCCAAT
TCAGTACATTTGAAATAGGATAGAGCTGTGGTTGTGCTTCCGCGGTGCGGGGCTCTTCTGCTGG
CCTCTGAGCCAGAAATTTAAAAAAAAAAAAAAGAGAAATAGTATAGAGAGGGAGAAAAGTCCTG
TTGCAAGGATAGATTAAAAATGTAAATCCTCTCCTTTCTGTACCTATTAGCTGCCTTTAAAAAA
ATTATTATTAATGGCTCCTTTCACTCTCTGTTAAATATCTTTTGTTCATAATGTTTGAAATCTT
ATACATCTTAACTGACAGAAGACAGCTGACTAATCCTTGTGGTTCTCCGTGGTCTTGTGACTGG
TTGATCTCTGCCCCTTTTCAGAGTTAAGAGGCGCCTAGGGATCTTTGATTTCTTCTGCCCCAAG
TTCATGTGTTGCTGCTAATCAAGGGACCTTTTCCTATGAAATCCTTCGGGAGTCACGCTTGCCT
CTCCTGTTGGTACAGGTACCCTTTATACCCTGCGTGTTAGTTAGTGTTGTGGCTTTTGGTCCCT
TGTTTCACATTAGTACCGGAGCAGCTGGGCAAAGTATGATTGAGCCCTGCACCACAACCTCACC
TACTCTAGAGTAAGGGGTGGTGTTCCAGCCAACGCTGACAGGCTCTGTGTACTGTCTTAATGGA
TGTCTTAGAAGATCTGTACTTCTTACAGGCAGCTCTAGACGACATTCTGAGAGGGTTGACTGTA
TGACATTGCTGCTGCGGCCGTCACTCTGAAGTGACTCAGAGTAGCCTAGCCTCTGTCTGCTTTT
CTTTCTGTAGTCCCATCTTATATGTGGCTAACCCACCCTAAGTAGTCTACTCCACTTCAGAAAA
GTGATCTTTTTGTTCTGTTTTGTTTTTATTTTTCAAGATAGGGTTTCTTTGTATACTCCTGGCT
GCCCTGGAACTCATTCTGTAGACCATGCTGGTCTTAACTCACAGAGATCTGCCTGCCTTGCCTT
CCGACTACTGGGATTAAAGGCGTGGATCACCACTCTTTGGCTAAATAAGTGACCGTGATTAGGA
AAATCTTGATTTTGTTTGTTTTGTTTTCAACCCCTTAGTAGGTTTGGATAAATGTTCCCAAGTG
TTTGTTAGTTTTATCCAGTGAAGGATTTTTCTTCCTTACTTACCTTTTTTTGTGGCAGGGTCTC
CTGTAAAGCCTAGGCTAGCCTTCAACCCACTATTTAGCCCAAGATGGTCTGCACTTCTGATTTT
TCAGCCCTGCCTCTCAAGTGCTAGGATTGAAGGTGAGCACCATCATGCCCTCCCTCCAGCCCCC
ACCCCAAGATGGGTTTTTGTGTATCCCTCCTGACTGGGTAGACCAGGCAGGCCTCAGAACTCAG
AGATTCGCCTGCCTCTGCCTCCTTAGTGCTGGGATTAAAGGTGTACACGCCCTGCTTTTGACTT
TTTTTTTCCCCCAGAAAGAATTTTCTGTTCCTTAGTTCTTTGGTTTAGATTCTGGGACTAGAGT
TTGGAAGGCAAAATAGTCCAGTTGCCTCTCTTGGTGGGCACAGTTGTCGTTGGCCTCAGTGGTC
ACTTGTCCAAGCTGCTGTAAATTAGCCTGATAGAATGGCATATGCCAAACAATCCACTTTGGGA
CCAAAACAAAGCTCAAAGTCAGTATCGCTGGTGGCTGACGTTCCCCACGGGTGCCCCAGAGAGT
GAAGGGACAGCATTTTGCGTAGGCAAAACTCTGATATGTTCCTGCTCTCCTGGCACCAGGAGGA
ATTAAGACTGAATGTATAATGGGAGCATCGCCTTTGCCAAATGAGATGAGTGACAGGTTAACTA
GAAATGTGACAATCACATTTCCTGTAGCTCAGATGATTCTGTTCTTCCAAAGTGTTAGCAGCCT
AATTAAATCTGGTGGACGGGGGGTGGGGAGGGAGCTATTCTGTAGTGGTTAACATGGTATTCTT
TAAGGAGAAAAAAGCCAAAGAGAACTCGTCTGGCTTCTTAGCCTTTAAGATGGTAATGGGCAGA
ACCTGGGGTTTAATCTCTTCAGAGCTGCACATCTTGTACGTTTGAGATTGGCCTCTAAGTCTTG
TATTGCAGATTAAATTGTTGCTGTCTTTTTAAATTTGAGTGAGGGTTATGTGCATTTAACTGTG
TACCTGTGTTTTATCATCCCCAGGACATTCTTACCATAGGGGTCTTGACACAGCAAAGTAAAAA
TGTGTGTTTGTAAATAGTTACTTGTAAGTAAGGAGTCTAAATAACAATAGTTTTGCATCTAATC
TGGGCTCCGATATACTTGCATTGTTGTCAGGGTCAATTATGAAACAAGTTTGGTGCCTCCTTTT
TTATCATGTTTCCCCTTGTAGCGGTTGTGTTTAATGTCATTAAAAAGAAATAAAAGTTCTCATC
AGTG

hide sequence

RefSeq Acc Id:

XM_006238958 ⟹ XP_006239020

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	146,778,706 - 146,819,721 (-)	NCBI
mRatBN7.2	5	141,494,352 - 141,535,502 (-)	NCBI
Rnor_6.0	5	147,333,890 - 147,374,876 (-)	NCBI
Rnor_5.0	5	151,068,331 - 151,109,662 (-)	NCBI

Sequence:

show sequence

GGGAGGTTGTCCCTGCCCCCCACCTCCACGTCCGTGGGCGAGTGACGCCCCTCATCCTGCTGAG
GAGAAGGGAGCTGTCAGGTCCTCGGGCTGCGTGCGAGGAAGGTGGGAGTCAATCACTTTGACAA
GTCTCCTGAAAGGAACAGCCAGCAGGAGTTGAAACCTTTTTCCATTTGGTCTCGTGGCAAAGGC
AGAGATTGCTCCAGCAGCTCCACACAATATGACGTGCTCACTATTACCCTCTGAACAGTCTTCT
GGTACCTCTTTTCTGCCTAAAGACAATGCCTCATTTTCTTGGGGTTCCTCGGATGAAGATGAGT
TGGATGACTCCTTGTTGGAGTTTTCTGACGGAGAAGAAGATGATGGCCATTTCAGTTTCACAGA
AGAAGAGATTGAGATGCTCTTGAAGGACGATGATGGTGGGCATAATGAGTATAGAGCGAGAAAG
AGTCAAATTCTACCCCATACTCCTCAAGAAAATTCTTTGTACAGCTTGGGACCAGCAGCTGAAA
CCCCTGGCTTCCTCAAACTACCTCAACTAAGTCCATCAGTTGGTCATGGGCCAACTCCTAGTAA
ATCATTAAACAGACACTTTGTACTTGAAAAGAATCTTATAAAAGTAACTGTTGTTGCACCATTT
AATCCAACAGTTTGTGATCCTGTGCTTGATAAAGACAAGATCGATTCCTCCAAAGAAACGGAAA
AACCTGCCTCCCTTCAGGAACAGACGAGAGAAGACGATCTTCATCCTAATGAGAGTAAACGTTG
CACTGAACCTGAAGGGGTCAGTCCCAATAACTCTGCTTGGGATGGGCCCCTGCTTTCTTCTCCT
TCAAATAATAACATCGAACAAACTGCCTCAGATAAAAATATACCTGAAAGTAAGAAACCTACCC
CTGTGTTCTCTCAGATCTCCAACCATTCAGAAGTACCCAACAGGAAAAATAGTGGATCACACAA
ATCAGGTTGTGAAGTGAGAATTCCAGTTGTGTCCAGTTCATCAAACAGACATGCCTTTGACAAG
GATTCTGGGGAGGCGAAAGGTGAGAGAAGACTAGGCAAAGTCATCCCTGTGCTACAAACCAGGA
CTAGGATGTTTTCACAATCAGATCTAGAAAAACAGAAGGACATTTATCTCAGCAAAGTCATTGC
TCATATAGAAGACCCAGGGGACTCTAACCAAGGTGCCTTGGGAGAGCTCGATGCTCTGATGGAT
CAAGTTCATATGCAGAACCCAGACTGGCAGCATCCTTCAGATCTTACCACACGAAATTATGCCC
GGTTCCGACAGCGACCTCTGCAGAGATACAGTCTGAGTCAGTGGGTTGACAGAAACAAGCGGAG
CCACCACCGTTTCCAGCGCCTCCCAGACTTCTCATACAGTCCCTATGTTTCACCCCATCCACAG
TGACCGCCCCACCCAGGACTCTCCACAGCAGCACCGTACTCCTCTGCCATTTGTGTTTGTATAT
TTTGAGTTTTATTTTTCACAAGATTTTTATTTAAAGAATTTGTCAACTTTTGGAAGTGCCCATT
ACTGTCTTGAATTTTTTTTTTTTTTTAAATGAGGGCCACCTCCGCATCCCTGGTTTGTGTCCGT
CTGTTGTACATGTTCAGCAATGTTAAGCAGTGTTTTTCTGTTTGTTCTTTGTTGTTGCTGCTGC
TGTTTTAAAATTTAAAATGAAAGTGATTCCCTTCTGAAGGCCTGTGACAAGTCAGAACAGCTGT
AAGCACAGGCAGTCTTGTTCAACCGGAACGAAGTATCTTTCCGTCTGCTGTGAGGAGGAGGTTG
TTGTGCAGGCTAAGGGCCGGTGTTAGTATTGTTGACTTGTGAATAGATAGAGGTCACTTTTAAC
AGCCCCTCTTTTTAAATCTGAGTTTCTTGAATACTTGTCAGTATTTTAATGTTGCCAATTCAGT
ACATTTGAAATAGGATAGAGCTGTGGTTGTGCTTCCGCGGTGCGGGGCTCTTCTGCTGGCCTCT
GAGCCAGAAATTTAAAAAAAAAAAAAAGAGAAATAGTATAGAGAGGGAGAAAAGTCCTGTTGCA
AGGATAGATTAAAAATGTAAATCCTCTCCTTTCTGTACCTATTAGCTGCCTTTAAAAAAATTAT
TATTAATGGCTCCTTTCACTCTCTGTTAAATATCTTTTGTTCATAATGTTTGAAATCTTATACA
TCTTAACTGACAGAAGACAGCTGACTAATCCTTGTGGTTCTCCGTGGTCTTGTGACTGGTTGAT
CTCTGCCCCTTTTCAGAGTTAAGAGGCGCCTAGGGATCTTTGATTTCTTCTGCCCCAAGTTCAT
GTGTTGCTGCTAATCAAGGGACCTTTTCCTATGAAATCCTTCGGGAGTCACGCTTGCCTCTCCT
GTTGGTACAGGTACCCTTTATACCCTGCGTGTTAGTTAGTGTTGTGGCTTTTGGTCCCTTGTTT
CACATTAGTACCGGAGCAGCTGGGCAAAGTATGATTGAGCCCTGCACCACAACCTCACCTACTC
TAGAGTAAGGGGTGGTGTTCCAGCCAACGCTGACAGGCTCTGTGTACTGTCTTAATGGATGTCT
TAGAAGATCTGTACTTCTTACAGGCAGCTCTAGACGACATTCTGAGAGGGTTGACTGTATGACA
TTGCTGCTGCGGCCGTCACTCTGAAGTGACTCAGAGTAGCCTAGCCTCTGTCTGCTTTTCTTTC
TGTAGTCCCATCTTATATGTGGCTAACCCACCCTAAGTAGTCTACTCCACTTCAGAAAAGTGAT
CTTTTTGTTCTGTTTTGTTTTTATTTTTCAAGATAGGGTTTCTTTGTATACTCCTGGCTGCCCT
GGAACTCATTCTGTAGACCATGCTGGTCTTAACTCACAGAGATCTGCCTGCCTTGCCTTCCGAC
TACTGGGATTAAAGGCGTGGATCACCACTCTTTGGCTAAATAAGTGACCGTGATTAGGAAAATC
TTGATTTTGTTTGTTTTGTTTTCAACCCCTTAGTAGGTTTGGATAAATGTTCCCAAGTGTTTGT
TAGTTTTATCCAGTGAAGGATTTTTCTTCCTTACTTACCTTTTTTTGTGGCAGGGTCTCCTGTA
AAGCCTAGGCTAGCCTTCAACCCACTATTTAGCCCAAGATGGTCTGCACTTCTGATTTTTCAGC
CCTGCCTCTCAAGTGCTAGGATTGAAGGTGAGCACCATCATGCCCTCCCTCCAGCCCCCACCCC
AAGATGGGTTTTTGTGTATCCCTCCTGACTGGGTAGACCAGGCAGGCCTCAGAACTCAGAGATT
CGCCTGCCTCTGCCTCCTTAGTGCTGGGATTAAAGGTGTACACGCCCTGCTTTTGACTTTTTTT
TTCCCCCAGAAAGAATTTTCTGTTCCTTAGTTCTTTGGTTTAGATTCTGGGACTAGAGTTTGGA
AGGCAAAATAGTCCAGTTGCCTCTCTTGGTGGGCACAGTTGTCGTTGGCCTCAGTGGTCACTTG
TCCAAGCTGCTGTAAATTAGCCTGATAGAATGGCATATGCCAAACAATCCACTTTGGGACCAAA
ACAAAGCTCAAAGTCAGTATCGCTGGTGGCTGACGTTCCCCACGGGTGCCCCAGAGAGTGAAGG
GACAGCATTTTGCGTAGGCAAAACTCTGATATGTTCCTGCTCTCCTGGCACCAGGAGGAATTAA
GACTGAATGTATAATGGGAGCATCGCCTTTGCCAAATGAGATGAGTGACAGGTTAACTAGAAAT
GTGACAATCACATTTCCTGTAGCTCAGATGATTCTGTTCTTCCAAAGTGTTAGCAGCCTAATTA
AATCTGGTGGACGGGGGGTGGGGAGGGAGCTATTCTGTAGTGGTTAACATGGTATTCTTTAAGG
AGAAAAAAGCCAAAGAGAACTCGTCTGGCTTCTTAGCCTTTAAGATGGTAATGGGCAGAACCTG
GGGTTTAATCTCTTCAGAGCTGCACATCTTGTACGTTTGAGATTGGCCTCTAAGTCTTGTATTG
CAGATTAAATTGTTGCTGTCTTTTTAAATTTGAGTGAGGGTTATGTGCATTTAACTGTGTACCT
GTGTTTTATCATCCCCAGGACATTCTTACCATAGGGGTCTTGACACAGCAAAGTAAAAATGTGT
GTTTGTAAATAGTTACTTGTAAGTAAGGAGTCTAAATAACAATAGTTTTGCATCTAATCTGGGC
TCCGATATACTTGCATTGTTGTCAGGGTCAATTATGAAACAAGTTTGGTGCCTCCTTTTTTATC
ATGTTTCCCCTTGTAGCGGTTGTGTTTAATGTCATTAAAAAGAAATAAAAGTTCTCATCAGTG

hide sequence

RefSeq Acc Id:

XM_006238959 ⟹ XP_006239021

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	146,778,706 - 146,819,991 (-)	NCBI
mRatBN7.2	5	141,494,352 - 141,535,656 (-)	NCBI
Rnor_6.0	5	147,333,890 - 147,375,134 (-)	NCBI
Rnor_5.0	5	151,068,331 - 151,109,662 (-)	NCBI

Sequence:

show sequence

GTGGGGGAGGTCGTGAAGGGGGCGATAAAATGGCGCAGGGGGCGGAGTGAGGTGCTGCCGCTCG
CCCAGGCTTTGGCCCGGCTTCCGGAGATATGACGTGCTCACTATTACCCTCTGAACAGTCTTCT
GGTACCTCTTTTCTGCCTAAAGACAATGCCTCATTTTCTTGGGGTTCCTCGGATGAAGATGAGT
TGGATGACTCCTTGTTGGAGTTTTCTGACGGAGAAGAAGATGATGGCCATTTCAGTTTCACAGA
AGAAGAGATTGAGATGCTCTTGAAGGACGATGATGGTGGGCATAATGAGTATAGAGCGAGAAAG
AGTCAAATTCTACCCCATACTCCTCAAGAAAATTCTTTGTACAGCTTGGGACCAGCAGCTGAAA
CCCCTGGCTTCCTCAAACTACCTCAACTAAGTCCATCAGTTGGTCATGGGCCAACTCCTAGTAA
ATCATTAAACAGACACTTTGTACTTGAAAAGAATCTTATAAAAGTAACTGTTGTTGCACCATTT
AATCCAACAGTTTGTGATCCTGTGCTTGATAAAGACAAGATCGATTCCTCCAAAGAAACGGAAA
AACCTGCCTCCCTTCAGGAACAGACGAGAGAAGACGATCTTCATCCTAATGAGAGTAAACGTTG
CACTGAACCTGAAGGGGTCAGTCCCAATAACTCTGCTTGGGATGGGCCCCTGCTTTCTTCTCCT
TCAAATAATAACATCGAACAAACTGCCTCAGATAAAAATATACCTGAAAGTAAGAAACCTACCC
CTGTGTTCTCTCAGATCTCCAACCATTCAGAAGTACCCAACAGGAAAAATAGTGGATCACACAA
ATCAGGTTGTGAAGTGAGAATTCCAGTTGTGTCCAGTTCATCAAACAGACATGCCTTTGACAAG
GATTCTGGGGAGGCGAAAGGTGAGAGAAGACTAGGCAAAGTCATCCCTGTGCTACAAACCAGGA
CTAGGATGTTTTCACAATCAGATCTAGAAAAACAGAAGGACATTTATCTCAGCAAAGTCATTGC
TCATATAGAAGACCCAGGGGACTCTAACCAAGGTGCCTTGGGAGAGCTCGATGCTCTGATGGAT
CAAGTTCATATGCAGAACCCAGACTGGCAGCATCCTTCAGATCTTACCACACGAAATTATGCCC
GGTTCCGACAGCGACCTCTGCAGAGATACAGTCTGAGTCAGTGGGTTGACAGAAACAAGCGGAG
CCACCACCGTTTCCAGCGCCTCCCAGACTTCTCATACAGTCCCTATGTTTCACCCCATCCACAG
TGACCGCCCCACCCAGGACTCTCCACAGCAGCACCGTACTCCTCTGCCATTTGTGTTTGTATAT
TTTGAGTTTTATTTTTCACAAGATTTTTATTTAAAGAATTTGTCAACTTTTGGAAGTGCCCATT
ACTGTCTTGAATTTTTTTTTTTTTTTAAATGAGGGCCACCTCCGCATCCCTGGTTTGTGTCCGT
CTGTTGTACATGTTCAGCAATGTTAAGCAGTGTTTTTCTGTTTGTTCTTTGTTGTTGCTGCTGC
TGTTTTAAAATTTAAAATGAAAGTGATTCCCTTCTGAAGGCCTGTGACAAGTCAGAACAGCTGT
AAGCACAGGCAGTCTTGTTCAACCGGAACGAAGTATCTTTCCGTCTGCTGTGAGGAGGAGGTTG
TTGTGCAGGCTAAGGGCCGGTGTTAGTATTGTTGACTTGTGAATAGATAGAGGTCACTTTTAAC
AGCCCCTCTTTTTAAATCTGAGTTTCTTGAATACTTGTCAGTATTTTAATGTTGCCAATTCAGT
ACATTTGAAATAGGATAGAGCTGTGGTTGTGCTTCCGCGGTGCGGGGCTCTTCTGCTGGCCTCT
GAGCCAGAAATTTAAAAAAAAAAAAAAGAGAAATAGTATAGAGAGGGAGAAAAGTCCTGTTGCA
AGGATAGATTAAAAATGTAAATCCTCTCCTTTCTGTACCTATTAGCTGCCTTTAAAAAAATTAT
TATTAATGGCTCCTTTCACTCTCTGTTAAATATCTTTTGTTCATAATGTTTGAAATCTTATACA
TCTTAACTGACAGAAGACAGCTGACTAATCCTTGTGGTTCTCCGTGGTCTTGTGACTGGTTGAT
CTCTGCCCCTTTTCAGAGTTAAGAGGCGCCTAGGGATCTTTGATTTCTTCTGCCCCAAGTTCAT
GTGTTGCTGCTAATCAAGGGACCTTTTCCTATGAAATCCTTCGGGAGTCACGCTTGCCTCTCCT
GTTGGTACAGGTACCCTTTATACCCTGCGTGTTAGTTAGTGTTGTGGCTTTTGGTCCCTTGTTT
CACATTAGTACCGGAGCAGCTGGGCAAAGTATGATTGAGCCCTGCACCACAACCTCACCTACTC
TAGAGTAAGGGGTGGTGTTCCAGCCAACGCTGACAGGCTCTGTGTACTGTCTTAATGGATGTCT
TAGAAGATCTGTACTTCTTACAGGCAGCTCTAGACGACATTCTGAGAGGGTTGACTGTATGACA
TTGCTGCTGCGGCCGTCACTCTGAAGTGACTCAGAGTAGCCTAGCCTCTGTCTGCTTTTCTTTC
TGTAGTCCCATCTTATATGTGGCTAACCCACCCTAAGTAGTCTACTCCACTTCAGAAAAGTGAT
CTTTTTGTTCTGTTTTGTTTTTATTTTTCAAGATAGGGTTTCTTTGTATACTCCTGGCTGCCCT
GGAACTCATTCTGTAGACCATGCTGGTCTTAACTCACAGAGATCTGCCTGCCTTGCCTTCCGAC
TACTGGGATTAAAGGCGTGGATCACCACTCTTTGGCTAAATAAGTGACCGTGATTAGGAAAATC
TTGATTTTGTTTGTTTTGTTTTCAACCCCTTAGTAGGTTTGGATAAATGTTCCCAAGTGTTTGT
TAGTTTTATCCAGTGAAGGATTTTTCTTCCTTACTTACCTTTTTTTGTGGCAGGGTCTCCTGTA
AAGCCTAGGCTAGCCTTCAACCCACTATTTAGCCCAAGATGGTCTGCACTTCTGATTTTTCAGC
CCTGCCTCTCAAGTGCTAGGATTGAAGGTGAGCACCATCATGCCCTCCCTCCAGCCCCCACCCC
AAGATGGGTTTTTGTGTATCCCTCCTGACTGGGTAGACCAGGCAGGCCTCAGAACTCAGAGATT
CGCCTGCCTCTGCCTCCTTAGTGCTGGGATTAAAGGTGTACACGCCCTGCTTTTGACTTTTTTT
TTCCCCCAGAAAGAATTTTCTGTTCCTTAGTTCTTTGGTTTAGATTCTGGGACTAGAGTTTGGA
AGGCAAAATAGTCCAGTTGCCTCTCTTGGTGGGCACAGTTGTCGTTGGCCTCAGTGGTCACTTG
TCCAAGCTGCTGTAAATTAGCCTGATAGAATGGCATATGCCAAACAATCCACTTTGGGACCAAA
ACAAAGCTCAAAGTCAGTATCGCTGGTGGCTGACGTTCCCCACGGGTGCCCCAGAGAGTGAAGG
GACAGCATTTTGCGTAGGCAAAACTCTGATATGTTCCTGCTCTCCTGGCACCAGGAGGAATTAA
GACTGAATGTATAATGGGAGCATCGCCTTTGCCAAATGAGATGAGTGACAGGTTAACTAGAAAT
GTGACAATCACATTTCCTGTAGCTCAGATGATTCTGTTCTTCCAAAGTGTTAGCAGCCTAATTA
AATCTGGTGGACGGGGGGTGGGGAGGGAGCTATTCTGTAGTGGTTAACATGGTATTCTTTAAGG
AGAAAAAAGCCAAAGAGAACTCGTCTGGCTTCTTAGCCTTTAAGATGGTAATGGGCAGAACCTG
GGGTTTAATCTCTTCAGAGCTGCACATCTTGTACGTTTGAGATTGGCCTCTAAGTCTTGTATTG
CAGATTAAATTGTTGCTGTCTTTTTAAATTTGAGTGAGGGTTATGTGCATTTAACTGTGTACCT
GTGTTTTATCATCCCCAGGACATTCTTACCATAGGGGTCTTGACACAGCAAAGTAAAAATGTGT
GTTTGTAAATAGTTACTTGTAAGTAAGGAGTCTAAATAACAATAGTTTTGCATCTAATCTGGGC
TCCGATATACTTGCATTGTTGTCAGGGTCAATTATGAAACAAGTTTGGTGCCTCCTTTTTTATC
ATGTTTCCCCTTGTAGCGGTTGTGTTTAATGTCATTAAAAAGAAATAAAAGTTCTCATCAGTG

hide sequence

RefSeq Acc Id:

XM_006238961 ⟹ XP_006239023

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	146,778,706 - 146,819,989 (-)	NCBI
mRatBN7.2	5	141,494,352 - 141,535,659 (-)	NCBI
Rnor_6.0	5	147,333,890 - 147,375,142 (-)	NCBI
Rnor_5.0	5	151,068,331 - 151,109,662 (-)	NCBI

Sequence:

show sequence

GCCTCGGGGTGGGGGAGGTCGTGAAGGGGGCGATAAAATGGCGCAGGGGGCGGAGTGAGGTGCT
GCCGCTCGCCCAGGCTTTGGCCCGGCTTCCGGAGGAAGGTGGGAGTCAATCACTTTGACAAGTC
TCCTGAAAGGAACAGCCAGCAGGAGTTGAAACCTTTTTCCATTTGGTCTCGTGGCAAAGGCAGA
GATTGCTCCAGCAGCTCCACACAATATGACGTGCTCACTATTACCCTCTGAACAGTCTTCTGGT
ACCTCTTTTCTGCCTAAAGACAATGCCTCATTTTCTTGGGGTTCCTCGGATGAAGATGAGTTGG
ATGACTCCTTGTTGGAGTTTTCTGACGGAGAAGAAGATGATGGCCATTTCAGTTTCACAGAAGA
AGAGATTGAGATGCTCTTGAAGGACGATGATGGTGGGCATAATGAGTATAGAGCGAGAAAGAGT
CAAATTCTACCCCATACTCCTCAAGAAAATTCTTTGTACAGCTTGGGACCAGCAGCTGAAACCC
CTGGCTTCCTCAAACTACCTCAACTAAGTCCATCAGTTGGTCATGGGCCAACTCCTAGTAAATC
ATTAAACAGACACTTTGTACTTGAAAAGAATCTTATAAAAGTAACTGTTGTTGCACCATTTAAT
CCAACAGTTTGTGATCCTGTGCTTGATAAAGACAAGATCGATTCCTCCAAAGAAACGGAAAAAC
CTGCCTCCCTTCAGGAACAGACGAGAGAAGACGATCTTCATCCTAATGAGAGTAAACGTTGCAC
TGAACCTGAAGGGATCTCCAACCATTCAGAAGTACCCAACAGGAAAAATAGTGGATCACACAAA
TCAGGTTGTGAAGTGAGAATTCCAGTTGTGTCCAGTTCATCAAACAGACATGCCTTTGACAAGG
ATTCTGGGGAGGCGAAAGGTGAGAGAAGACTAGGCAAAGTCATCCCTGTGCTACAAACCAGGAC
TAGGATGTTTTCACAATCAGATCTAGAAAAACAGAAGGACATTTATCTCAGCAAAGTCATTGCT
CATATAGAAGACCCAGGGGACTCTAACCAAGGTGCCTTGGGAGAGCTCGATGCTCTGATGGATC
AAGTTCATATGCAGAACCCAGACTGGCAGCATCCTTCAGATCTTACCACACGAAATTATGCCCG
GTTCCGACAGCGACCTCTGCAGAGATACAGTCTGAGTCAGTGGGTTGACAGAAACAAGCGGAGC
CACCACCGTTTCCAGCGCCTCCCAGACTTCTCATACAGTCCCTATGTTTCACCCCATCCACAGT
GACCGCCCCACCCAGGACTCTCCACAGCAGCACCGTACTCCTCTGCCATTTGTGTTTGTATATT
TTGAGTTTTATTTTTCACAAGATTTTTATTTAAAGAATTTGTCAACTTTTGGAAGTGCCCATTA
CTGTCTTGAATTTTTTTTTTTTTTTAAATGAGGGCCACCTCCGCATCCCTGGTTTGTGTCCGTC
TGTTGTACATGTTCAGCAATGTTAAGCAGTGTTTTTCTGTTTGTTCTTTGTTGTTGCTGCTGCT
GTTTTAAAATTTAAAATGAAAGTGATTCCCTTCTGAAGGCCTGTGACAAGTCAGAACAGCTGTA
AGCACAGGCAGTCTTGTTCAACCGGAACGAAGTATCTTTCCGTCTGCTGTGAGGAGGAGGTTGT
TGTGCAGGCTAAGGGCCGGTGTTAGTATTGTTGACTTGTGAATAGATAGAGGTCACTTTTAACA
GCCCCTCTTTTTAAATCTGAGTTTCTTGAATACTTGTCAGTATTTTAATGTTGCCAATTCAGTA
CATTTGAAATAGGATAGAGCTGTGGTTGTGCTTCCGCGGTGCGGGGCTCTTCTGCTGGCCTCTG
AGCCAGAAATTTAAAAAAAAAAAAAAGAGAAATAGTATAGAGAGGGAGAAAAGTCCTGTTGCAA
GGATAGATTAAAAATGTAAATCCTCTCCTTTCTGTACCTATTAGCTGCCTTTAAAAAAATTATT
ATTAATGGCTCCTTTCACTCTCTGTTAAATATCTTTTGTTCATAATGTTTGAAATCTTATACAT
CTTAACTGACAGAAGACAGCTGACTAATCCTTGTGGTTCTCCGTGGTCTTGTGACTGGTTGATC
TCTGCCCCTTTTCAGAGTTAAGAGGCGCCTAGGGATCTTTGATTTCTTCTGCCCCAAGTTCATG
TGTTGCTGCTAATCAAGGGACCTTTTCCTATGAAATCCTTCGGGAGTCACGCTTGCCTCTCCTG
TTGGTACAGGTACCCTTTATACCCTGCGTGTTAGTTAGTGTTGTGGCTTTTGGTCCCTTGTTTC
ACATTAGTACCGGAGCAGCTGGGCAAAGTATGATTGAGCCCTGCACCACAACCTCACCTACTCT
AGAGTAAGGGGTGGTGTTCCAGCCAACGCTGACAGGCTCTGTGTACTGTCTTAATGGATGTCTT
AGAAGATCTGTACTTCTTACAGGCAGCTCTAGACGACATTCTGAGAGGGTTGACTGTATGACAT
TGCTGCTGCGGCCGTCACTCTGAAGTGACTCAGAGTAGCCTAGCCTCTGTCTGCTTTTCTTTCT
GTAGTCCCATCTTATATGTGGCTAACCCACCCTAAGTAGTCTACTCCACTTCAGAAAAGTGATC
TTTTTGTTCTGTTTTGTTTTTATTTTTCAAGATAGGGTTTCTTTGTATACTCCTGGCTGCCCTG
GAACTCATTCTGTAGACCATGCTGGTCTTAACTCACAGAGATCTGCCTGCCTTGCCTTCCGACT
ACTGGGATTAAAGGCGTGGATCACCACTCTTTGGCTAAATAAGTGACCGTGATTAGGAAAATCT
TGATTTTGTTTGTTTTGTTTTCAACCCCTTAGTAGGTTTGGATAAATGTTCCCAAGTGTTTGTT
AGTTTTATCCAGTGAAGGATTTTTCTTCCTTACTTACCTTTTTTTGTGGCAGGGTCTCCTGTAA
AGCCTAGGCTAGCCTTCAACCCACTATTTAGCCCAAGATGGTCTGCACTTCTGATTTTTCAGCC
CTGCCTCTCAAGTGCTAGGATTGAAGGTGAGCACCATCATGCCCTCCCTCCAGCCCCCACCCCA
AGATGGGTTTTTGTGTATCCCTCCTGACTGGGTAGACCAGGCAGGCCTCAGAACTCAGAGATTC
GCCTGCCTCTGCCTCCTTAGTGCTGGGATTAAAGGTGTACACGCCCTGCTTTTGACTTTTTTTT
TCCCCCAGAAAGAATTTTCTGTTCCTTAGTTCTTTGGTTTAGATTCTGGGACTAGAGTTTGGAA
GGCAAAATAGTCCAGTTGCCTCTCTTGGTGGGCACAGTTGTCGTTGGCCTCAGTGGTCACTTGT
CCAAGCTGCTGTAAATTAGCCTGATAGAATGGCATATGCCAAACAATCCACTTTGGGACCAAAA
CAAAGCTCAAAGTCAGTATCGCTGGTGGCTGACGTTCCCCACGGGTGCCCCAGAGAGTGAAGGG
ACAGCATTTTGCGTAGGCAAAACTCTGATATGTTCCTGCTCTCCTGGCACCAGGAGGAATTAAG
ACTGAATGTATAATGGGAGCATCGCCTTTGCCAAATGAGATGAGTGACAGGTTAACTAGAAATG
TGACAATCACATTTCCTGTAGCTCAGATGATTCTGTTCTTCCAAAGTGTTAGCAGCCTAATTAA
ATCTGGTGGACGGGGGGTGGGGAGGGAGCTATTCTGTAGTGGTTAACATGGTATTCTTTAAGGA
GAAAAAAGCCAAAGAGAACTCGTCTGGCTTCTTAGCCTTTAAGATGGTAATGGGCAGAACCTGG
GGTTTAATCTCTTCAGAGCTGCACATCTTGTACGTTTGAGATTGGCCTCTAAGTCTTGTATTGC
AGATTAAATTGTTGCTGTCTTTTTAAATTTGAGTGAGGGTTATGTGCATTTAACTGTGTACCTG
TGTTTTATCATCCCCAGGACATTCTTACCATAGGGGTCTTGACACAGCAAAGTAAAAATGTGTG
TTTGTAAATAGTTACTTGTAAGTAAGGAGTCTAAATAACAATAGTTTTGCATCTAATCTGGGCT
CCGATATACTTGCATTGTTGTCAGGGTCAATTATGAAACAAGTTTGGTGCCTCCTTTTTTATCA
TGTTTCCCCTTGTAGCGGTTGTGTTTAATGTCATTAAAAAGAAATAAAAGTTCTCATCAGTG

hide sequence

RefSeq Acc Id:

XM_006238963 ⟹ XP_006239025

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	146,778,706 - 146,819,991 (-)	NCBI
mRatBN7.2	5	141,494,352 - 141,535,659 (-)	NCBI
Rnor_6.0	5	147,333,890 - 147,375,143 (-)	NCBI
Rnor_5.0	5	151,068,331 - 151,109,662 (-)	NCBI

Sequence:

show sequence

TGCCTCGGGGTGGGGGAGGTCGTGAAGGGGGCGATAAAATGGCGCAGGGGGCGGAGTGAGGTGC
TGCCGCTCGCCCAGGCTTTGGCCCGGCTTCCGGAGGAAGGTGGGAGTCAATCACTTTGACAAGT
CTCCTGAAAGGAACAGCCAGCAGGAGTTGAAACCTTTTTCCATTTGGTCTCGTGGCAAAGGCAG
AGATTGCTCCAGCAGCTCCACACAATATGACGTGCTCACTATTACCCTCTGAACAGTCTTCTGG
TACCTCTTTTCTGCCTAAAGACAATGCCTCATTTTCTTGGGGTTCCTCGGATGAAGATGAGTTG
GATGACTCCTTGTTGGAGTTTTCTGACGGAGAAGAAGATGATGGCCATTTCAGTTTCACAGAAG
AAGAGATTGAGATGCTCTTGAAGGACGATGATGTTTGTGATCCTGTGCTTGATAAAGACAAGAT
CGATTCCTCCAAAGAAACGGAAAAACCTGCCTCCCTTCAGGAACAGACGAGAGAAGACGATCTT
CATCCTAATGAGAGTAAACGTTGCACTGAACCTGAAGGGGTCAGTCCCAATAACTCTGCTTGGG
ATGGGCCCCTGCTTTCTTCTCCTTCAAATAATAACATCGAACAAACTGCCTCAGATAAAAATAT
ACCTGAAAGTAAGAAACCTACCCCTGTGTTCTCTCAGATCTCCAACCATTCAGAAGTACCCAAC
AGGAAAAATAGTGGATCACACAAATCAGGTTGTGAAGTGAGAATTCCAGTTGTGTCCAGTTCAT
CAAACAGACATGCCTTTGACAAGGATTCTGGGGAGGCGAAAGGTGAGAGAAGACTAGGCAAAGT
CATCCCTGTGCTACAAACCAGGACTAGGATGTTTTCACAATCAGATCTAGAAAAACAGAAGGAC
ATTTATCTCAGCAAAGTCATTGCTCATATAGAAGACCCAGGGGACTCTAACCAAGGTGCCTTGG
GAGAGCTCGATGCTCTGATGGATCAAGTTCATATGCAGAACCCAGACTGGCAGCATCCTTCAGA
TCTTACCACACGAAATTATGCCCGGTTCCGACAGCGACCTCTGCAGAGATACAGTCTGAGTCAG
TGGGTTGACAGAAACAAGCGGAGCCACCACCGTTTCCAGCGCCTCCCAGACTTCTCATACAGTC
CCTATGTTTCACCCCATCCACAGTGACCGCCCCACCCAGGACTCTCCACAGCAGCACCGTACTC
CTCTGCCATTTGTGTTTGTATATTTTGAGTTTTATTTTTCACAAGATTTTTATTTAAAGAATTT
GTCAACTTTTGGAAGTGCCCATTACTGTCTTGAATTTTTTTTTTTTTTTAAATGAGGGCCACCT
CCGCATCCCTGGTTTGTGTCCGTCTGTTGTACATGTTCAGCAATGTTAAGCAGTGTTTTTCTGT
TTGTTCTTTGTTGTTGCTGCTGCTGTTTTAAAATTTAAAATGAAAGTGATTCCCTTCTGAAGGC
CTGTGACAAGTCAGAACAGCTGTAAGCACAGGCAGTCTTGTTCAACCGGAACGAAGTATCTTTC
CGTCTGCTGTGAGGAGGAGGTTGTTGTGCAGGCTAAGGGCCGGTGTTAGTATTGTTGACTTGTG
AATAGATAGAGGTCACTTTTAACAGCCCCTCTTTTTAAATCTGAGTTTCTTGAATACTTGTCAG
TATTTTAATGTTGCCAATTCAGTACATTTGAAATAGGATAGAGCTGTGGTTGTGCTTCCGCGGT
GCGGGGCTCTTCTGCTGGCCTCTGAGCCAGAAATTTAAAAAAAAAAAAAAGAGAAATAGTATAG
AGAGGGAGAAAAGTCCTGTTGCAAGGATAGATTAAAAATGTAAATCCTCTCCTTTCTGTACCTA
TTAGCTGCCTTTAAAAAAATTATTATTAATGGCTCCTTTCACTCTCTGTTAAATATCTTTTGTT
CATAATGTTTGAAATCTTATACATCTTAACTGACAGAAGACAGCTGACTAATCCTTGTGGTTCT
CCGTGGTCTTGTGACTGGTTGATCTCTGCCCCTTTTCAGAGTTAAGAGGCGCCTAGGGATCTTT
GATTTCTTCTGCCCCAAGTTCATGTGTTGCTGCTAATCAAGGGACCTTTTCCTATGAAATCCTT
CGGGAGTCACGCTTGCCTCTCCTGTTGGTACAGGTACCCTTTATACCCTGCGTGTTAGTTAGTG
TTGTGGCTTTTGGTCCCTTGTTTCACATTAGTACCGGAGCAGCTGGGCAAAGTATGATTGAGCC
CTGCACCACAACCTCACCTACTCTAGAGTAAGGGGTGGTGTTCCAGCCAACGCTGACAGGCTCT
GTGTACTGTCTTAATGGATGTCTTAGAAGATCTGTACTTCTTACAGGCAGCTCTAGACGACATT
CTGAGAGGGTTGACTGTATGACATTGCTGCTGCGGCCGTCACTCTGAAGTGACTCAGAGTAGCC
TAGCCTCTGTCTGCTTTTCTTTCTGTAGTCCCATCTTATATGTGGCTAACCCACCCTAAGTAGT
CTACTCCACTTCAGAAAAGTGATCTTTTTGTTCTGTTTTGTTTTTATTTTTCAAGATAGGGTTT
CTTTGTATACTCCTGGCTGCCCTGGAACTCATTCTGTAGACCATGCTGGTCTTAACTCACAGAG
ATCTGCCTGCCTTGCCTTCCGACTACTGGGATTAAAGGCGTGGATCACCACTCTTTGGCTAAAT
AAGTGACCGTGATTAGGAAAATCTTGATTTTGTTTGTTTTGTTTTCAACCCCTTAGTAGGTTTG
GATAAATGTTCCCAAGTGTTTGTTAGTTTTATCCAGTGAAGGATTTTTCTTCCTTACTTACCTT
TTTTTGTGGCAGGGTCTCCTGTAAAGCCTAGGCTAGCCTTCAACCCACTATTTAGCCCAAGATG
GTCTGCACTTCTGATTTTTCAGCCCTGCCTCTCAAGTGCTAGGATTGAAGGTGAGCACCATCAT
GCCCTCCCTCCAGCCCCCACCCCAAGATGGGTTTTTGTGTATCCCTCCTGACTGGGTAGACCAG
GCAGGCCTCAGAACTCAGAGATTCGCCTGCCTCTGCCTCCTTAGTGCTGGGATTAAAGGTGTAC
ACGCCCTGCTTTTGACTTTTTTTTTCCCCCAGAAAGAATTTTCTGTTCCTTAGTTCTTTGGTTT
AGATTCTGGGACTAGAGTTTGGAAGGCAAAATAGTCCAGTTGCCTCTCTTGGTGGGCACAGTTG
TCGTTGGCCTCAGTGGTCACTTGTCCAAGCTGCTGTAAATTAGCCTGATAGAATGGCATATGCC
AAACAATCCACTTTGGGACCAAAACAAAGCTCAAAGTCAGTATCGCTGGTGGCTGACGTTCCCC
ACGGGTGCCCCAGAGAGTGAAGGGACAGCATTTTGCGTAGGCAAAACTCTGATATGTTCCTGCT
CTCCTGGCACCAGGAGGAATTAAGACTGAATGTATAATGGGAGCATCGCCTTTGCCAAATGAGA
TGAGTGACAGGTTAACTAGAAATGTGACAATCACATTTCCTGTAGCTCAGATGATTCTGTTCTT
CCAAAGTGTTAGCAGCCTAATTAAATCTGGTGGACGGGGGGTGGGGAGGGAGCTATTCTGTAGT
GGTTAACATGGTATTCTTTAAGGAGAAAAAAGCCAAAGAGAACTCGTCTGGCTTCTTAGCCTTT
AAGATGGTAATGGGCAGAACCTGGGGTTTAATCTCTTCAGAGCTGCACATCTTGTACGTTTGAG
ATTGGCCTCTAAGTCTTGTATTGCAGATTAAATTGTTGCTGTCTTTTTAAATTTGAGTGAGGGT
TATGTGCATTTAACTGTGTACCTGTGTTTTATCATCCCCAGGACATTCTTACCATAGGGGTCTT
GACACAGCAAAGTAAAAATGTGTGTTTGTAAATAGTTACTTGTAAGTAAGGAGTCTAAATAACA
ATAGTTTTGCATCTAATCTGGGCTCCGATATACTTGCATTGTTGTCAGGGTCAATTATGAAACA
AGTTTGGTGCCTCCTTTTTTATCATGTTTCCCCTTGTAGCGGTTGTGTTTAATGTCATTAAAAA
GAAATAAAAGTTCTCATCAGTG

hide sequence

RefSeq Acc Id:

XM_008764164 ⟹ XP_008762386

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	146,797,338 - 146,819,994 (-)	NCBI
mRatBN7.2	5	141,518,415 - 141,535,659 (-)	NCBI
Rnor_6.0	5	147,357,988 - 147,375,142 (-)	NCBI

Sequence:

show sequence

GCCTCGGGGTGGGGGAGGTCGTGAAGGGGGCGATAAAATGGCGCAGGGGGCGGAGTGAGGTGCT
GCCGCTCGCCCAGGCTTTGGCCCGGCTTCCGGAGGAAGGTGGGAGTCAATCACTTTGACAAGTC
TCCTGAAAGGAACAGCCAGCAGGAGTTGAAACCTTTTTCCATTTGGTCTCGTGGCAAAGGCAGA
GATTGCTCCAGCAGCTCCACACAATATGACGTGCTCACTATTACCCTCTGAACAGTCTTCTGGT
ACCTCTTTTCTGCCTAAAGACAATGCCTCATTTTCTTGGGGTTCCTCGGATGAAGATGAGTTGG
ATGACTCCTTGTTGGAGTTTTCTGACGGAGAAGAAGATGATGGCCATTTCAGTTTCACAGAAGA
AGAGATTGAGATGCTCTTGAAGGACGATGATGGTGGGCATAATGAGTATAGAGCGAGAAAGAGT
CAAATTCTACCCCATACTCCTCAAGAAAATTCTTTGTACAGCTTGGGACCAGCAGCTGAAACCC
CTGGCTTCCTCAAACTACCTCAACTAAGTCCATCAGTTGGTCATGGGCCAACTCCTAGTAAATC
ATTAAACAGACACTTTGTACTTGAAAAGAATCTTATAAAAGTAACTGTTGTTGCACCATTTAAT
CCAACAGTTTGTGATCCTGTGCTTGATAAAGACAAGATCGATTCCTCCAAAGAAACGGAAAAAC
CTGCCTCCCTTCAGGAACAGACGAGAGAAGACGATCTTCATCCTAATGAGAGTAAACGTTGCAC
TGAACCTGAAGGGGTCAGTCCCAATAACTCTGCTTGGGATGGGCCCCTGCTTTCTTCTCCTTCA
AATAATAACATCGAACAAACTGCCTCAGATAAAAATATACCTGAAAGTAAGAAACCTACCCCTG
TGTTCTCTCAGATCTCCAACCATTCAGAAGTACCCAACAGGAAAAATAGTGGATCACACAAATC
AGGTTGTGAAGTGAGAATTCCAGTTGTGTCCAGTTCATCAAACAGACATGCCTTTGACAAGGAT
TCTGGGGAGGCGAAAGGTGAGAGAAGACTAGGCAAAGTCATCCCTGTGCTACAAACCAGGACTA
GGATGTTTTCACAATCAGATCTAGAAAAACAGAAGGACATTTATCTCAGCAAAGTCATTGCTCA
TATAGAAGACCCAGGGGACTCTAACCAAGGATGAATGCCTAGAAGTGGAATTATTAGGGTTTCT
CTGTGTAGCAC

hide sequence

RefSeq Acc Id:

XM_039110609 ⟹ XP_038966537

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	146,778,706 - 146,819,992 (-)	NCBI
mRatBN7.2	5	141,494,352 - 141,535,659 (-)	NCBI

RefSeq Acc Id:

XM_063288258 ⟹ XP_063144328

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	146,778,706 - 146,819,969 (-)	NCBI

RefSeq Acc Id:

XM_063288259 ⟹ XP_063144329

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	146,778,706 - 146,814,294 (-)	NCBI

RefSeq Acc Id:

XM_063288260 ⟹ XP_063144330

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	146,778,706 - 146,819,841 (-)	NCBI

RefSeq Acc Id:

XM_063288261 ⟹ XP_063144331

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	146,785,733 - 146,819,994 (-)	NCBI

RefSeq Acc Id:

XM_063288262 ⟹ XP_063144332

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	146,778,706 - 146,814,294 (-)	NCBI

RefSeq Acc Id:

XM_063288263 ⟹ XP_063144333

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	146,778,706 - 146,820,223 (-)	NCBI

RefSeq Acc Id:

XM_063288264 ⟹ XP_063144334

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	146,778,706 - 146,819,970 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001128100	(Get FASTA)	NCBI Sequence Viewer
	XP_006239018	(Get FASTA)	NCBI Sequence Viewer
	XP_006239019	(Get FASTA)	NCBI Sequence Viewer
	XP_006239020	(Get FASTA)	NCBI Sequence Viewer
	XP_006239021	(Get FASTA)	NCBI Sequence Viewer
	XP_006239023	(Get FASTA)	NCBI Sequence Viewer
	XP_006239025	(Get FASTA)	NCBI Sequence Viewer
	XP_008762386	(Get FASTA)	NCBI Sequence Viewer
	XP_038966537	(Get FASTA)	NCBI Sequence Viewer
	XP_063144328	(Get FASTA)	NCBI Sequence Viewer
	XP_063144329	(Get FASTA)	NCBI Sequence Viewer
	XP_063144330	(Get FASTA)	NCBI Sequence Viewer
	XP_063144331	(Get FASTA)	NCBI Sequence Viewer
	XP_063144332	(Get FASTA)	NCBI Sequence Viewer
	XP_063144333	(Get FASTA)	NCBI Sequence Viewer
	XP_063144334	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL80529	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000009436
	ENSRNOP00000009436.3
	ENSRNOP00000080960
	ENSRNOP00000080960.1

RefSeq Acc Id:

NP_001128100 ⟸ NM_001134628

- UniProtKB:

D3ZSX9 (UniProtKB/TrEMBL), A6ISH8 (UniProtKB/TrEMBL), A0A8I5ZRF8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTCSLLPSEQSSGTSFLPKDNASFSWGSSDEDELDDSLLEFSDGEEDDGHFSFTEEEIEMLLKD
DDGGHNEYRARKSQILPHTPQENSLYSLGPAAETPGFLKLPQLSPSVGHGPTPSKSLNRHFVLE
KNLIKVTVVAPFNPTVCDPVLDKDKIDSSKETEKPASLQEQTREDDLHPNESKRCTEPEGVSPN
NSAWDGPLLSSPSNNNIEQTASDKNIPESKKPTPVFSQISNHSEVPNRKNSGSHKSGCEVRIPV
VSSSSNRHAFDKDSGEAKGERRLGKVIPVLQTRTRMFSQSDLEKQKDIYLSKVIAHIEDPGDSN
QGALGELDALMDQVHMQNPDWQHPSDLTTRNYARFRQRPLQRYSLSQWVDRNKRSHHRFQRLPD
FSYSPYVSPHPQ

hide sequence

RefSeq Acc Id:	XP_006239021 ⟸ XM_006238959
- Peptide Label:	isoform X1
- UniProtKB:	D3ZSX9 (UniProtKB/TrEMBL), A6ISH8 (UniProtKB/TrEMBL), A0A8I5ZRF8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTCSLLPSEQSSGTSFLPKDNASFSWGSSDEDELDDSLLEFSDGEEDDGHFSFTEEEIEMLLKD DDGGHNEYRARKSQILPHTPQENSLYSLGPAAETPGFLKLPQLSPSVGHGPTPSKSLNRHFVLE KNLIKVTVVAPFNPTVCDPVLDKDKIDSSKETEKPASLQEQTREDDLHPNESKRCTEPEGVSPN NSAWDGPLLSSPSNNNIEQTASDKNIPESKKPTPVFSQISNHSEVPNRKNSGSHKSGCEVRIPV VSSSSNRHAFDKDSGEAKGERRLGKVIPVLQTRTRMFSQSDLEKQKDIYLSKVIAHIEDPGDSN QGALGELDALMDQVHMQNPDWQHPSDLTTRNYARFRQRPLQRYSLSQWVDRNKRSHHRFQRLPD FSYSPYVSPHPQ hide sequence

RefSeq Acc Id:	XP_006239025 ⟸ XM_006238963
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5ZRF8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTCSLLPSEQSSGTSFLPKDNASFSWGSSDEDELDDSLLEFSDGEEDDGHFSFTEEEIEMLLKD DDVCDPVLDKDKIDSSKETEKPASLQEQTREDDLHPNESKRCTEPEGVSPNNSAWDGPLLSSPS NNNIEQTASDKNIPESKKPTPVFSQISNHSEVPNRKNSGSHKSGCEVRIPVVSSSSNRHAFDKD SGEAKGERRLGKVIPVLQTRTRMFSQSDLEKQKDIYLSKVIAHIEDPGDSNQGALGELDALMDQ VHMQNPDWQHPSDLTTRNYARFRQRPLQRYSLSQWVDRNKRSHHRFQRLPDFSYSPYVSPHPQ hide sequence

RefSeq Acc Id:	XP_006239023 ⟸ XM_006238961
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZRF8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTCSLLPSEQSSGTSFLPKDNASFSWGSSDEDELDDSLLEFSDGEEDDGHFSFTEEEIEMLLKD DDGGHNEYRARKSQILPHTPQENSLYSLGPAAETPGFLKLPQLSPSVGHGPTPSKSLNRHFVLE KNLIKVTVVAPFNPTVCDPVLDKDKIDSSKETEKPASLQEQTREDDLHPNESKRCTEPEGISNH SEVPNRKNSGSHKSGCEVRIPVVSSSSNRHAFDKDSGEAKGERRLGKVIPVLQTRTRMFSQSDL EKQKDIYLSKVIAHIEDPGDSNQGALGELDALMDQVHMQNPDWQHPSDLTTRNYARFRQRPLQR YSLSQWVDRNKRSHHRFQRLPDFSYSPYVSPHPQ hide sequence

RefSeq Acc Id:	XP_006239018 ⟸ XM_006238956
- Peptide Label:	isoform X1
- UniProtKB:	D3ZSX9 (UniProtKB/TrEMBL), A6ISH8 (UniProtKB/TrEMBL), A0A8I5ZRF8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTCSLLPSEQSSGTSFLPKDNASFSWGSSDEDELDDSLLEFSDGEEDDGHFSFTEEEIEMLLKD DDGGHNEYRARKSQILPHTPQENSLYSLGPAAETPGFLKLPQLSPSVGHGPTPSKSLNRHFVLE KNLIKVTVVAPFNPTVCDPVLDKDKIDSSKETEKPASLQEQTREDDLHPNESKRCTEPEGVSPN NSAWDGPLLSSPSNNNIEQTASDKNIPESKKPTPVFSQISNHSEVPNRKNSGSHKSGCEVRIPV VSSSSNRHAFDKDSGEAKGERRLGKVIPVLQTRTRMFSQSDLEKQKDIYLSKVIAHIEDPGDSN QGALGELDALMDQVHMQNPDWQHPSDLTTRNYARFRQRPLQRYSLSQWVDRNKRSHHRFQRLPD FSYSPYVSPHPQ hide sequence

RefSeq Acc Id:	XP_006239020 ⟸ XM_006238958
- Peptide Label:	isoform X1
- UniProtKB:	D3ZSX9 (UniProtKB/TrEMBL), A6ISH8 (UniProtKB/TrEMBL), A0A8I5ZRF8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTCSLLPSEQSSGTSFLPKDNASFSWGSSDEDELDDSLLEFSDGEEDDGHFSFTEEEIEMLLKD DDGGHNEYRARKSQILPHTPQENSLYSLGPAAETPGFLKLPQLSPSVGHGPTPSKSLNRHFVLE KNLIKVTVVAPFNPTVCDPVLDKDKIDSSKETEKPASLQEQTREDDLHPNESKRCTEPEGVSPN NSAWDGPLLSSPSNNNIEQTASDKNIPESKKPTPVFSQISNHSEVPNRKNSGSHKSGCEVRIPV VSSSSNRHAFDKDSGEAKGERRLGKVIPVLQTRTRMFSQSDLEKQKDIYLSKVIAHIEDPGDSN QGALGELDALMDQVHMQNPDWQHPSDLTTRNYARFRQRPLQRYSLSQWVDRNKRSHHRFQRLPD FSYSPYVSPHPQ hide sequence

RefSeq Acc Id:	XP_006239019 ⟸ XM_006238957
- Peptide Label:	isoform X1
- UniProtKB:	D3ZSX9 (UniProtKB/TrEMBL), A6ISH8 (UniProtKB/TrEMBL), A0A8I5ZRF8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTCSLLPSEQSSGTSFLPKDNASFSWGSSDEDELDDSLLEFSDGEEDDGHFSFTEEEIEMLLKD DDGGHNEYRARKSQILPHTPQENSLYSLGPAAETPGFLKLPQLSPSVGHGPTPSKSLNRHFVLE KNLIKVTVVAPFNPTVCDPVLDKDKIDSSKETEKPASLQEQTREDDLHPNESKRCTEPEGVSPN NSAWDGPLLSSPSNNNIEQTASDKNIPESKKPTPVFSQISNHSEVPNRKNSGSHKSGCEVRIPV VSSSSNRHAFDKDSGEAKGERRLGKVIPVLQTRTRMFSQSDLEKQKDIYLSKVIAHIEDPGDSN QGALGELDALMDQVHMQNPDWQHPSDLTTRNYARFRQRPLQRYSLSQWVDRNKRSHHRFQRLPD FSYSPYVSPHPQ hide sequence

RefSeq Acc Id:

XP_008762386 ⟸ XM_008764164

- Peptide Label:

isoform X3

- Sequence:

show sequence

MTCSLLPSEQSSGTSFLPKDNASFSWGSSDEDELDDSLLEFSDGEEDDGHFSFTEEEIEMLLKD
DDGGHNEYRARKSQILPHTPQENSLYSLGPAAETPGFLKLPQLSPSVGHGPTPSKSLNRHFVLE
KNLIKVTVVAPFNPTVCDPVLDKDKIDSSKETEKPASLQEQTREDDLHPNESKRCTEPEGVSPN
NSAWDGPLLSSPSNNNIEQTASDKNIPESKKPTPVFSQISNHSEVPNRKNSGSHKSGCEVRIPV
VSSSSNRHAFDKDSGEAKGERRLGKVIPVLQTRTRMFSQSDLEKQKDIYLSKVIAHIEDPGDSN
QG

hide sequence

RefSeq Acc Id:

ENSRNOP00000009436 ⟸ ENSRNOT00000009436

RefSeq Acc Id:	XP_038966537 ⟸ XM_039110609
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I5ZRF8 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000080960 ⟸ ENSRNOT00000094547

RefSeq Acc Id:	XP_063144333 ⟸ XM_063288263
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063144334 ⟸ XM_063288264
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063144328 ⟸ XM_063288258
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063144330 ⟸ XM_063288260
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063144332 ⟸ XM_063288262
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063144329 ⟸ XM_063288259
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063144331 ⟸ XM_063288261
- Peptide Label:	isoform X3

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZSX9-F1-model_v2	AlphaFold	D3ZSX9	1-396	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694056

Promoter ID:

EPDNEW_R4581

Type:

initiation region

Name:

S100pbp_1

Description:

S100P binding protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	147,375,081 - 147,375,141	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1564943	AgrOrtholog
BioCyc Gene	G2FUF-39818	BioCyc
Ensembl Genes	ENSRNOG00000007099	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000009436	ENTREZGENE
	ENSRNOT00000009436.5	UniProtKB/TrEMBL
	ENSRNOT00000094547.1	UniProtKB/TrEMBL
InterPro	S100PBP	UniProtKB/TrEMBL
KEGG Report	rno:500551	UniProtKB/TrEMBL
NCBI Gene	500551	ENTREZGENE
PANTHER	PTHR14455	UniProtKB/TrEMBL
	S100P-BINDING PROTEIN	UniProtKB/TrEMBL
Pfam	S100PBPR	UniProtKB/TrEMBL
PhenoGen	S100pbp	PhenoGen
RatGTEx	ENSRNOG00000007099	RatGTEx
UniProt	A0A8I5ZRF8	ENTREZGENE, UniProtKB/TrEMBL
	A6ISH8	ENTREZGENE, UniProtKB/TrEMBL
	D3ZSX9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-10-12	S100pbp	S100P binding protein	RGD1564943	similar to 4930429A08Rik protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1564943	similar to 4930429A08Rik protein	RGD1564943_predicted	similar to 4930429A08Rik protein (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1564943_predicted	similar to 4930429A08Rik protein (predicted)	LOC500551	similar to 4930429A08Rik protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC500551	similar to 4930429A08Rik protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar