Cnot7 (CCR4-NOT transcription complex, subunit 7)

Gene: Cnot7 (CCR4-NOT transcription complex, subunit 7) Rattus norvegicus

Analyze

Symbol:

Cnot7

Name:

CCR4-NOT transcription complex, subunit 7

RGD ID:

1305313

Description:

Predicted to enable DNA-binding transcription factor binding activity; poly(A)-specific ribonuclease activity; and transcription corepressor activity. Predicted to be involved in several processes, including negative regulation of type I interferon-mediated signaling pathway; positive regulation of viral genome replication; and regulation of gene expression. Predicted to act upstream of or within P-body assembly and positive regulation of RNA metabolic process. Predicted to be located in cytoplasm and nuclear speck. Predicted to be part of CCR4-NOT core complex. Predicted to be active in P-body. Biomarker of male infertility. Orthologous to human CNOT7 (CCR4-NOT transcription complex subunit 7); PARTICIPATES IN microRNA pathway; RNA degradation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; furan.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

CCR4-NOT transcription complex subunit 7; LOC306492

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CNOT7 (CCR4-NOT transcription complex subunit 7)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Cnot7 (CCR4-NOT transcription complex, subunit 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cnot7 (CCR4-NOT transcription complex subunit 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CNOT7 (CCR4-NOT transcription complex subunit 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CNOT7 (CCR4-NOT transcription complex subunit 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cnot7 (CCR4-NOT transcription complex subunit 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CNOT7 (CCR4-NOT transcription complex subunit 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CNOT7 (CCR4-NOT transcription complex subunit 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cnot7 (CCR4-NOT transcription complex subunit 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CNOT7 (CCR4-NOT transcription complex subunit 7)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Mus musculus (house mouse):	Cnot7 (CCR4-NOT transcription complex, subunit 7)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cnot7 (CCR4-NOT transcription complex, subunit 7)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	POP2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Pop2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ccf-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cnot7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	58,478,882 - 58,498,046 (+)	NCBI		GRCr8
mRatBN7.2	16	51,775,416 - 51,794,581 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	51,775,412 - 51,794,576 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	57,105,829 - 57,124,948 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	60,494,464 - 60,513,620 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	55,739,783 - 55,758,902 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	54,899,452 - 54,918,616 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	54,899,452 - 54,918,613 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	54,602,180 - 54,621,344 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	55,118,260 - 55,137,733 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	55,118,338 - 55,137,808 (+)	NCBI
Celera	16	49,667,151 - 49,686,312 (+)	NCBI		Celera
Cytogenetic Map	16	q12.1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

hereditary spastic paraplegia 53 (ISO)

male infertility (IEP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-methylcholine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

aflatoxin B1 (ISO)

amiodarone (ISO)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

CGP 52608 (ISO)

choline (ISO)

crocidolite asbestos (ISO)

dicrotophos (ISO)

diquat (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

formaldehyde (ISO)

fulvestrant (ISO)

furan (EXP)

gallic acid (ISO)

gentamycin (EXP)

glyphosate (EXP)

gold atom (ISO)

gold(0) (ISO)

Heptachlor epoxide (ISO)

ivermectin (ISO)

L-methionine (ISO)

methidathion (ISO)

methotrexate (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

nickel atom (ISO)

paracetamol (ISO)

phenytoin (EXP)

progesterone (ISO)

resveratrol (EXP)

rotenone (ISO)

succimer (ISO)

sunitinib (ISO)

thimerosal (ISO)

trichostatin A (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

deadenylation-dependent decapping of nuclear-transcribed mRNA (ISO)

defense response to virus (ISO)

miRNA-mediated gene silencing by mRNA destabilization (ISO)

negative regulation of cell population proliferation (ISO)

negative regulation of DNA-templated transcription (ISO)

negative regulation of gene expression (ISO)

negative regulation of type I interferon-mediated signaling pathway (ISO)

nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (IBA)

nuclear-transcribed mRNA poly(A) tail shortening (ISO)

obsolete exonucleolytic catabolism of deadenylated mRNA (IBA)

P-body assembly (ISO)

positive regulation of cell population proliferation (ISO)

positive regulation of mRNA catabolic process (ISO)

positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (ISO)

positive regulation of nuclear-transcribed mRNA poly(A) tail shortening (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

positive regulation of viral genome replication (ISO)

regulation of tyrosine phosphorylation of STAT protein (ISO)

regulatory ncRNA-mediated gene silencing (ISO)

Cellular Component

CCR4-NOT complex (ISO)

CCR4-NOT core complex (IBA)

cytoplasm (ISO)

intracellular non-membrane-bounded organelle (ISO)

nuclear body (ISO)

nuclear speck (ISO)

nucleus (ISO)

P-body (IBA,ISO)

Molecular Function

3'-5'-RNA exonuclease activity (ISO)

DNA-binding transcription factor binding (ISO)

nucleic acid binding (IEA)

poly(A)-specific ribonuclease activity (IBA,ISO)

protein binding (IPI,ISO)

RNA exonuclease activity (ISO)

transcription corepressor activity (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

microRNA pathway (ISO)

RNA degradation pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Human carbon catabolite repressor protein (CCR4)-associative factor 1: cloning, expression and characterization of its interaction with the B-cell translocation protein BTG1.	Bogdan JA, etal., Biochem J. 1998 Dec 1;336 ( Pt 2):471-81.
2.	Accumulated HSV1-TK proteins interfere with spermatogenesis through a disruption of the integrity of Sertoli-germ cell junctions.	Cai LY, etal., J Reprod Dev. 2012;58(5):544-51. Epub 2012 Jun 14.
3.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
5.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
6.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
7.	GOA pipeline	RGD automated data pipeline
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
9.	Comprehensive gene review and curation	RGD comprehensive gene curation
10.	RNA decay machines: deadenylation by the Ccr4-not and Pan2-Pan3 complexes.	Wahle E and Winkler GS, Biochim Biophys Acta. 2013 Jun-Jul;1829(6-7):561-70. doi: 10.1016/j.bbagrm.2013.01.003. Epub 2013 Jan 19.

Additional References at PubMed

PMID:7791755	PMID:12477932	PMID:15769875	PMID:18625844	PMID:19276069	PMID:19558367	PMID:19605561	PMID:19716330	PMID:19946888	PMID:20065043	PMID:20133598	PMID:21278420
PMID:21336257	PMID:23386060	PMID:25038453	PMID:30361391

Genomics

Comparative Map Data

Cnot7
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	58,478,882 - 58,498,046 (+)	NCBI		GRCr8
mRatBN7.2	16	51,775,416 - 51,794,581 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	51,775,412 - 51,794,576 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	57,105,829 - 57,124,948 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	60,494,464 - 60,513,620 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	55,739,783 - 55,758,902 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	54,899,452 - 54,918,616 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	54,899,452 - 54,918,613 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	54,602,180 - 54,621,344 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	55,118,260 - 55,137,733 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	55,118,338 - 55,137,808 (+)	NCBI
Celera	16	49,667,151 - 49,686,312 (+)	NCBI		Celera
Cytogenetic Map	16	q12.1	NCBI

CNOT7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	17,224,966 - 17,246,857 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	17,224,966 - 17,246,878 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	17,082,475 - 17,104,366 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	17,131,111 - 17,148,758 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	8	17,133,391 - 17,148,758	NCBI
Celera	8	16,052,781 - 16,070,428 (-)	NCBI		Celera
Cytogenetic Map	8	p22	NCBI
HuRef	8	15,631,606 - 15,649,253 (-)	NCBI		HuRef
CHM1_1	8	17,288,194 - 17,305,840 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	17,492,557 - 17,514,454 (-)	NCBI		T2T-CHM13v2.0

Cnot7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	40,945,579 - 40,968,888 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	40,945,581 - 40,968,888 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	40,492,538 - 40,515,847 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	40,492,540 - 40,515,847 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	41,578,390 - 41,596,658 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	41,991,853 - 42,010,121 (-)	NCBI		MGSCv36	mm8
Celera	8	43,143,063 - 43,161,167 (-)	NCBI		Celera
Cytogenetic Map	8	A4	NCBI
cM Map	8	23.89	NCBI

Cnot7
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955463	285,228 - 306,077 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955463	285,228 - 306,077 (+)	NCBI	ChiLan1.0	ChiLan1.0

CNOT7
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	35,684,759 - 35,706,593 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	11,423,548 - 11,441,118 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	16,439,014 - 16,459,636 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	13,383,044 - 13,404,896 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	13,387,288 - 13,404,445 (-)	Ensembl	panpan1.1		panPan2

CNOT7
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	40,554,214 - 40,571,841 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	16	40,555,565 - 40,571,720 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	16	41,051,677 - 41,069,314 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	42,607,899 - 42,625,509 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	16	42,608,835 - 42,625,516 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	16	40,701,212 - 40,718,848 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	16	41,244,469 - 41,262,106 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	41,437,882 - 41,455,554 (-)	NCBI		UU_Cfam_GSD_1.0

Cnot7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	38,836,452 - 38,854,039 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936573	6,288,397 - 6,306,706 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936573	6,288,397 - 6,305,984 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CNOT7
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	4,933,453 - 4,950,346 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	4,934,379 - 4,950,093 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	5,327,739 - 5,343,363 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CNOT7
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	15,315,816 - 15,333,492 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	15,317,349 - 15,333,466 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666052	26,945,476 - 26,963,200 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cnot7
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624769	22,046,526 - 22,065,339 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624769	22,047,177 - 22,065,314 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Cnot7
27 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	384
Count of miRNA genes:	220
Interacting mature miRNAs:	281
Transcripts:	ENSRNOT00000016882
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1600378	Arunc4	Aerobic running capacity QTL 4		0.03	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	16	380245	80345693	Rat
2312660	Bw95	Body weight QTL 95		0.05	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	16	832236	59492508	Rat
2312663	Slep9	Serum leptin concentration QTL 9		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	832236	59492508	Rat
2312666	Insul16	Insulin level QTL 16		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	16	832236	59492508	Rat
2312669	Stl23	Serum triglyceride level QTL 23		0.01	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	16	832236	59492508	Rat
737826	Alc11	Alcohol consumption QTL 11	3.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	4227609	60252231	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor depth of invasion (CMO:0001888)	16	17696791	82635055	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor depth of invasion (CMO:0001888)	16	17696791	82635055	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor diameter (CMO:0001889)	16	17696791	82635055	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor diameter (CMO:0001889)	16	17696791	82635055	Rat
70215	Niddm29	Non-insulin dependent diabetes mellitus QTL 29	3.54		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	16	19004435	75226532	Rat
2302057	Pia29	Pristane induced arthritis QTL 29	3.6	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)	16	21735975	66735975	Rat
8694453	Bw172	Body weight QTL 172	8.33	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	16	24325513	69325513	Rat
6903294	Stl30	Serum triglyceride level QTL 30	2.6	0.0013	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	16	25152793	70152793	Rat
1298529	Arunc1	Aerobic running capacity QTL 1	4		exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	16	31951520	60148445	Rat
1578768	Stresp22	Stress response QTL 22	2.8		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	16	35288870	80288870	Rat
2293690	Bss45	Bone structure and strength QTL 45	5.13	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	16	37752156	82752156	Rat
2300163	Bmd64	Bone mineral density QTL 64	5.3	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	16	37752156	82752156	Rat
7205510	Activ5	Activity QTL 5	3.78	0.00028	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	16	42396345	84729064	Rat

Markers in Region

D16Got55

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	51,777,099 - 51,777,294 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	54,901,136 - 54,901,330	NCBI	Rnor6.0
Rnor_5.0	16	54,603,864 - 54,604,058	UniSTS	Rnor5.0
RGSC_v3.4	16	55,119,943 - 55,120,138	RGD	RGSC3.4
RGSC_v3.4	16	55,119,944 - 55,120,138	UniSTS	RGSC3.4
RGSC_v3.1	16	55,120,019 - 55,120,213	RGD
Celera	16	49,668,835 - 49,669,029	UniSTS
RH 3.4 Map	16	528.9	UniSTS
RH 3.4 Map	16	528.9	RGD
RH 2.0 Map	16	594.8	RGD
Cytogenetic Map	16	q12.1	UniSTS

RH134146

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	51,784,859 - 51,785,054 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	54,908,896 - 54,909,090	NCBI	Rnor6.0
Rnor_5.0	16	54,611,624 - 54,611,818	UniSTS	Rnor5.0
RGSC_v3.4	16	55,127,615 - 55,127,809	UniSTS	RGSC3.4
Celera	16	49,676,595 - 49,676,789	UniSTS
RH 3.4 Map	16	525.5	UniSTS
Cytogenetic Map	16	q12.1	UniSTS

RH141884

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	51,793,742 - 51,793,927 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	54,917,778 - 54,917,962	NCBI	Rnor6.0
Rnor_5.0	16	54,620,506 - 54,620,690	UniSTS	Rnor5.0
RGSC_v3.4	16	55,136,898 - 55,137,082	UniSTS	RGSC3.4
Celera	16	49,685,477 - 49,685,661	UniSTS
Cytogenetic Map	16	q12.1	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	39	56	40	19	40	8	10	74	34	41	11	8
Low		4	1	1		1		1		1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600125	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600126	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600127	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600128	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600129	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094534	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094537	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275431	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275432	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275433	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275434	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC111946	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC167766	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473995	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000016882 ⟹ ENSRNOP00000016882

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	51,775,412 - 51,794,576 (+)	Ensembl
Rnor_6.0 Ensembl	16	54,899,452 - 54,918,613 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000099744 ⟹ ENSRNOP00000092791

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	51,775,412 - 51,793,120 (+)	Ensembl

RefSeq Acc Id:

NM_001107313 ⟹ NP_001100783

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	58,478,882 - 58,498,043 (+)	NCBI
mRatBN7.2	16	51,775,416 - 51,794,578 (+)	NCBI
Rnor_6.0	16	54,899,452 - 54,918,613 (+)	NCBI
Rnor_5.0	16	54,602,180 - 54,621,344 (+)	NCBI
RGSC_v3.4	16	55,118,260 - 55,137,733 (+)	RGD
Celera	16	49,667,151 - 49,686,312 (+)	RGD

Sequence:

show sequence

TCATGCCGCGCCCTCGATAGGACGTGCGAGGAGCGACGTCGCAGCGCTGGGCAGAGCGCAGCTC
CGGCTCCCCTTTCCCCTTTGCAGGGCGAGAGCTGTCTATGGGGCTCCCTCTGCCGCCGCCGGTA
CCGCCACCGCCACCGCCGCCGGGTGCTATCTCTATGGCGAGGAGGAGGAGGAGGAGCGCGAGCT
CAGAGACACAAGTACACAAGTAAAGAGTAAAGTATTTTTATGAAACAAATCTTCAATCAAGTAT
AACATTTTGATGCTTCGCATCTAGACTCCTTGTGCTGTCACTATGCCAGCAGCAACTGTAGATC
ATAGCCAAAGAATTTGTGAAGTTTGGGCTTGTAACCTGGATGAAGAGATGAAGAAAATCCGTCA
AGTTATCCGAAAATATAATTATGTTGCTATGGACACCGAGTTTCCAGGCGTTGTTGCAAGGCCC
ATTGGAGAATTCAGAAGCAATGCTGACTATCAGTACCAACTGTTGCGATGTAATGTAGACTTGT
TAAAGATAATTCAGCTTGGACTGACATTTATGAATGAGCAAGGAGAATACCCTCCAGGAACATC
AACTTGGCAGTTTAATTTTAAATTTAATTTGACGGAGGACATGTATGCTCAGGACTCTATAGAG
CTACTGACAACGTCTGGCATCCAGTTTAAAAAACATGAGGAGGAAGGGATTGAGACCCAGTATT
TTGCAGAACTTCTTATGACCTCAGGAGTGGTTCTCTGTGAAGGGGTCAAATGGTTATCATTTCA
TAGTGGTTATGACTTTGGCTATTTAATCAAAATTCTGACCAACTCTAACTTGCCTGAAGAAGAG
CTTGATTTCTTTGAGATCCTTCGATTATTCTTCCCTGTCATCTATGATGTGAAGTACCTCATGA
AGAGCTGCAAGAACCTCAAGGGTGGACTGCAGGAAGTTGCTGAGCAGTTAGAGCTGGAGCGGAT
AGGACCTCAACACCAGGCAGGATCTGACTCACTGCTTACAGGAATGGCCTTTTTCAAAATGAGA
GAAATGTTCTTTGAAGATCACATTGATGATGCCAAATACTGTGGCCACTTATACGGCCTTGGTT
CTGGCTCATCCTATGTACAGAACGGCACAGGGAATGCATATGAAGAGGAAGCCAGCAAGCAGTC
GTGACAGGAAATAGTCTTCTTATTTTTATTTTATACGAGTTACACACATGCTTGTATATAGGTT
TTATCATCCCTTAAATAATAGGCAATACCTGCCCCTCCTTTGGTAGCCCTTCTTTTCTGCTTTC
AGTAATAAGTATGGCCTTTCTTAGCTATGATCTTAATAAATTAAAGTACATTCAGGTTAAATCT
GGCCTTAATTTAATACACCTCTTATCAAGCTTGTGTGACAAAGCTACATTACTGAATAATTTGA
CAAACTTTGCCTACTTGAGCTTGGTTTTGTTTTTCCCTTTCCTAAATTAACTAGCATTGACTGT
AATTTATTTCCCTCTTCCGTGCCTCTCCTCCTATTCTGCAGTACTTATAGGTATTTAAGATTGT
GGACCATCAAGTTTGCACTTTATAGAGTGATTTCAATCCTCTATTTTATCAGAAATTGTGATTT
TTCTTGCTCTTAGCTAGAAAAATGACCATCCACCACCTTTTTACAGTATTTGCTTGTTTTTGAC
ATTCAGAGTACAGCACGTGCATTGTGCAAATTGTTGATTCAACGGGACTAACAAGAAGACAAGG
AACTACTGAAGAGCCTAGTAACTACTGTTTCTGTGTGTAGTGTTTAACCTTCCGAACACATCTC
CTGTCTGTTGGTTTCTAATTGGCATGCATAGGCTGCTATGTGACTGAAGAATTTCAAACCAGCT
TTACACCCTTCAGGAAGAAGCCCTTGCGATTGGAGGTTTCCACTCTGCCAGAAAGAAACTGGCG
TTTAAGATGTGGAACTACAGTTTTATGACAGCAACGCTTCCCTTGACCGGCTTCCTTTTACTCC
ATCACTTTTACCCTTAATGTTTTATTTTATAAACATATTTATGATGTTCTTGATTTGTTGACTA
CGCAAATCAATTTCATTAAAGTCCAAAGATAACAAGTCTTTAGGTACATTTTATATCAAATTAA
AAATACAAAAAAAAATGTGATTTCATAAATGCTACAAAAATAAATAATGGAGAGATTTGGTGCA
AAACAACAAAATGCAAAATATATATATAAATACACACATATAGCTAATAAAATTACCTGAGGAG
TGTAATGCTTGTTTATTTTTTTGTGTATATCTTTGCAATCTATTTTATATATATTGACAAGAGA
CTGTGAAATATTTAGCCATGCAGAATACGTGACCACACCAGAGCATGTGTTGGAAGATTTTGGT
GAACATTAACTCTACCCTGAAGTGACGGACTACAAGTTGTAATGTGTGTTATCTACACTTCAAT
CAATAATATTAGAAAGTCTCCAACTGTTAGCAACACAGTTCATTTCCCTTGTACATTCTGTATA
CATGATACGAAAATGCTGTACCTGGGCGGTCCTTTTTAAACTAAACATTATTTGCAAAACAGAG
GGTATTATTTGTTTTTAAAGCTTTTGTAAATAAAGGCTTCAAGAATGTTTTCCT

hide sequence

RefSeq Acc Id:

XM_017600125 ⟹ XP_017455614

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	58,478,948 - 58,498,046 (+)	NCBI
mRatBN7.2	16	51,775,479 - 51,794,581 (+)	NCBI
Rnor_6.0	16	54,899,479 - 54,918,616 (+)	NCBI

Sequence:

show sequence

GAGGAGCGACGTCGCAGCGCTGGGCAGAGCGCAGCTCCGGCTCCCCTTTCCCCTTTGCAGGGCG
AGAGCTGTCTATGGGGCTCCCTCTGCCGCCGCCGGTACCGCCACCGCCACCGCCGCCGGGTGCT
ATCTCTATGGCGAGGAGGAGGAGGAGGAGCGCGAGCTCAGAGACACAAGTACACAAGTAAAGAG
TAAAGTATTTTTATGAAACAAATCTTCAATCAAGTATAACATTTTGATGCTTCGCATCTAGACT
CCTTGTGCTGTCACTATGCCAGCAGCAACTGTAGATCATAGCCAAAGAATTTGTGAAGTTTGGG
CTTGTAACCTGGATGAAGAGATGAAGAAAATCCGTCAAGTTATCCGAAAATATAATTATGTTGC
TATGGACACCGAGTTTCCAGGCGTTGTTGCAAGGCCCATTGGAGAATTCAGAAGCAATGCTGAC
TATCAGTACCAACTGTTGCGATGTAATGTAGACTTGTTAAAGATAATTCAGCTTGGACTGACAT
TTATGAATGAGCAAGGAGAATACCCTCCAGGAACATCAACTTGGCAGTTTAATTTTAAATTTAA
TTTGACGTCTGGGACTGCATTGGGACCTGGGAATCCATATTTTTGGGAGGACATGTATGCTCAG
GACTCTATAGAGCTACTGACAACGTCTGGCATCCAGTTTAAAAAACATGAGGAGGAAGGGATTG
AGACCCAGTATTTTGCAGAACTTCTTATGACCTCAGGAGTGGTTCTCTGTGAAGGGGTCAAATG
GTTATCATTTCATAGTGGTTATGACTTTGGCTATTTAATCAAAATTCTGACCAACTCTAACTTG
CCTGAAGAAGAGCTTGATTTCTTTGAGATCCTTCGATTATTCTTCCCTGTCATCTATGATGTGA
AGTACCTCATGAAGAGCTGCAAGAACCTCAAGGGTGGACTGCAGGAAGTTGCTGAGCAGTTAGA
GCTGGAGCGGATAGGACCTCAACACCAGGCAGGATCTGACTCACTGCTTACAGGAATGGCCTTT
TTCAAAATGAGAGAAATGTTCTTTGAAGATCACATTGATGATGCCAAATACTGTGGCCACTTAT
ACGGCCTTGGTTCTGGCTCATCCTATGTACAGAACGGCACAGGGAATGCATATGAAGAGGAAGC
CAGCAAGCAGTCGTGACAGGAAATAGTCTTCTTATTTTTATTTTATACGAGTTACACACATGCT
TGTATATAGGTTTTATCATCCCTTAAATAATAGGCAATACCTGCCCCTCCTTTGGTAGCCCTTC
TTTTCTGCTTTCAGTAATAAGTATGGCCTTTCTTAGCTATGATCTTAATAAATTAAAGTACATT
CAGGTTAAATCTGGCCTTAATTTAATACACCTCTTATCAAGCTTGTGTGACAAAGCTACATTAC
TGAATAATTTGACAAACTTTGCCTACTTGAGCTTGGTTTTGTTTTTCCCTTTCCTAAATTAACT
AGCATTGACTGTAATTTATTTCCCTCTTCCGTGCCTCTCCTCCTATTCTGCAGTACTTATAGGT
ATTTAAGATTGTGGACCATCAAGTTTGCACTTTATAGAGTGATTTCAATCCTCTATTTTATCAG
AAATTGTGATTTTTCTTGCTCTTAGCTAGAAAAATGACCATCCACCACCTTTTTACAGTATTTG
CTTGTTTTTGACATTCAGAGTACAGCACGTGCATTGTGCAAATTGTTGATTCAACGGGACTAAC
AAGAAGACAAGGAACTACTGAAGAGCCTAGTAACTACTGTTTCTGTGTGTAGTGTTTAACCTTC
CGAACACATCTCCTGTCTGTTGGTTTCTAATTGGCATGCATAGGCTGCTATGTGACTGAAGAAT
TTCAAACCAGCTTTACACCCTTCAGGAAGAAGCCCTTGCGATTGGAGGTTTCCACTCTGCCAGA
AAGAAACTGGCGTTTAAGATGTGGAACTACAGTTTTATGACAGCAACGCTTCCCTTGACCGGCT
TCCTTTTACTCCATCACTTTTACCCTTAATGTTTTATTTTATAAACATATTTATGATGTTCTTG
ATTTGTTGACTACGCAAATCAATTTCATTAAAGTCCAAAGATAACAAGTCTTTAGGTACATTTT
ATATCAAATTAAAAATACAAAAAAAAATGTGATTTCATAAATGCTACAAAAATAAATAATGGAG
AGATTTGGTGCAAAACAACAAAATGCAAAATATATATATAAATACACACATATAGCTAATAAAA
TTACCTGAGGAGTGTAATGCTTGTTTATTTTTTTGTGTATATCTTTGCAATCTATTTTATATAT
ATTGACAAGAGACTGTGAAATATTTAGCCATGCAGAATACGTGACCACACCAGAGCATGTGTTG
GAAGATTTTGGTGAACATTAACTCTACCCTGAAGTGACGGACTACAAGTTGTAATGTGTGTTAT
CTACACTTCAATCAATAATATTAGAAAGTCTCCAACTGTTAGCAACACAGTTCATTTCCCTTGT
ACATTCTGTATACATGATACGAAAATGCTGTACCTGGGCGGTCCTTTTTAAACTAAACATTATT
TGCAAAACAGAGGGTATTATTTGTTTTTAAAGCTTTTGTAAATAAAGGCTTCAAGAATGTTTTC
CTATA

hide sequence

RefSeq Acc Id:

XM_017600126 ⟹ XP_017455615

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	58,479,284 - 58,498,046 (+)	NCBI
mRatBN7.2	16	51,775,827 - 51,794,581 (+)	NCBI
Rnor_6.0	16	54,899,820 - 54,918,616 (+)	NCBI

Sequence:

show sequence

GCGGCGCGCAGTGATGACGCCACCGCTTTGTACCTGGGACTTCGTTGTGGGAAGGAAATTGAGA
GTGGAGGGCGGTGGCCTACTTCTGAACTAGTAGCTCCTCTTCGCGGTGGTTGGGAGTCAATCTG
ACTCTAGTAAATGCTATCAGCACCCTCGACCTGGCTGTGTGCCAGCGAAGAGAGTTATCCTTGA
CATGAATGCGTCTGTGCTTTCTTCACGTTGCCCACGGAGGACATGCGACCTCAGTAATGAGAAG
GCCTTTGCTGCCTCTTCAGGGACCCTGAGACCGCAGTAGAGAAGAGGGGTGGAGGAGAGCGGTG
TTAAATTACAGTGTTTCCGTAGTGTGTACACAAGTAAAGAGTAAAGTATTTTTATGAAACAAAT
CTTCAATCAAGTATAACATTTTGATGCTTCGCATCTAGACTCCTTGTGCTGTCACTATGCCAGC
AGCAACTGTAGATCATAGCCAAAGAATTTGTGAAGTTTGGGCTTGTAACCTGGATGAAGAGATG
AAGAAAATCCGTCAAGTTATCCGAAAATATAATTATGTTGCTATGGACACCGAGTTTCCAGGCG
TTGTTGCAAGGCCCATTGGAGAATTCAGAAGCAATGCTGACTATCAGTACCAACTGTTGCGATG
TAATGTAGACTTGTTAAAGATAATTCAGCTTGGACTGACATTTATGAATGAGCAAGGAGAATAC
CCTCCAGGAACATCAACTTGGCAGTTTAATTTTAAATTTAATTTGACGTCTGGGACTGCATTGG
GACCTGGGAATCCATATTTTTGGGAGGACATGTATGCTCAGGACTCTATAGAGCTACTGACAAC
GTCTGGCATCCAGTTTAAAAAACATGAGGAGGAAGGGATTGAGACCCAGTATTTTGCAGAACTT
CTTATGACCTCAGGAGTGGTTCTCTGTGAAGGGGTCAAATGGTTATCATTTCATAGTGGTTATG
ACTTTGGCTATTTAATCAAAATTCTGACCAACTCTAACTTGCCTGAAGAAGAGCTTGATTTCTT
TGAGATCCTTCGATTATTCTTCCCTGTCATCTATGATGTGAAGTACCTCATGAAGAGCTGCAAG
AACCTCAAGGGTGGACTGCAGGAAGTTGCTGAGCAGTTAGAGCTGGAGCGGATAGGACCTCAAC
ACCAGGCAGGATCTGACTCACTGCTTACAGGAATGGCCTTTTTCAAAATGAGAGAAATGTTCTT
TGAAGATCACATTGATGATGCCAAATACTGTGGCCACTTATACGGCCTTGGTTCTGGCTCATCC
TATGTACAGAACGGCACAGGGAATGCATATGAAGAGGAAGCCAGCAAGCAGTCGTGACAGGAAA
TAGTCTTCTTATTTTTATTTTATACGAGTTACACACATGCTTGTATATAGGTTTTATCATCCCT
TAAATAATAGGCAATACCTGCCCCTCCTTTGGTAGCCCTTCTTTTCTGCTTTCAGTAATAAGTA
TGGCCTTTCTTAGCTATGATCTTAATAAATTAAAGTACATTCAGGTTAAATCTGGCCTTAATTT
AATACACCTCTTATCAAGCTTGTGTGACAAAGCTACATTACTGAATAATTTGACAAACTTTGCC
TACTTGAGCTTGGTTTTGTTTTTCCCTTTCCTAAATTAACTAGCATTGACTGTAATTTATTTCC
CTCTTCCGTGCCTCTCCTCCTATTCTGCAGTACTTATAGGTATTTAAGATTGTGGACCATCAAG
TTTGCACTTTATAGAGTGATTTCAATCCTCTATTTTATCAGAAATTGTGATTTTTCTTGCTCTT
AGCTAGAAAAATGACCATCCACCACCTTTTTACAGTATTTGCTTGTTTTTGACATTCAGAGTAC
AGCACGTGCATTGTGCAAATTGTTGATTCAACGGGACTAACAAGAAGACAAGGAACTACTGAAG
AGCCTAGTAACTACTGTTTCTGTGTGTAGTGTTTAACCTTCCGAACACATCTCCTGTCTGTTGG
TTTCTAATTGGCATGCATAGGCTGCTATGTGACTGAAGAATTTCAAACCAGCTTTACACCCTTC
AGGAAGAAGCCCTTGCGATTGGAGGTTTCCACTCTGCCAGAAAGAAACTGGCGTTTAAGATGTG
GAACTACAGTTTTATGACAGCAACGCTTCCCTTGACCGGCTTCCTTTTACTCCATCACTTTTAC
CCTTAATGTTTTATTTTATAAACATATTTATGATGTTCTTGATTTGTTGACTACGCAAATCAAT
TTCATTAAAGTCCAAAGATAACAAGTCTTTAGGTACATTTTATATCAAATTAAAAATACAAAAA
AAAATGTGATTTCATAAATGCTACAAAAATAAATAATGGAGAGATTTGGTGCAAAACAACAAAA
TGCAAAATATATATATAAATACACACATATAGCTAATAAAATTACCTGAGGAGTGTAATGCTTG
TTTATTTTTTTGTGTATATCTTTGCAATCTATTTTATATATATTGACAAGAGACTGTGAAATAT
TTAGCCATGCAGAATACGTGACCACACCAGAGCATGTGTTGGAAGATTTTGGTGAACATTAACT
CTACCCTGAAGTGACGGACTACAAGTTGTAATGTGTGTTATCTACACTTCAATCAATAATATTA
GAAAGTCTCCAACTGTTAGCAACACAGTTCATTTCCCTTGTACATTCTGTATACATGATACGAA
AATGCTGTACCTGGGCGGTCCTTTTTAAACTAAACATTATTTGCAAAACAGAGGGTATTATTTG
TTTTTAAAGCTTTTGTAAATAAAGGCTTCAAGAATGTTTTCCTATA

hide sequence

RefSeq Acc Id:

XM_017600127 ⟹ XP_017455616

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	58,479,284 - 58,498,046 (+)	NCBI
mRatBN7.2	16	51,775,827 - 51,794,581 (+)	NCBI
Rnor_6.0	16	54,899,820 - 54,918,616 (+)	NCBI

Sequence:

show sequence

GCGGCGCGCAGTGATGACGCCACCGCTTTGTACCTGGGACTTCGTTGTGGGAAGGAAATTGAGA
GTGGAGGGCGGTGGCCTACTTCTGAACTAGTAGCTCCTCTTCGCGGTGGTTGGGAGTCAATCTG
ACTCTAGTAAATGCTATCAGCACCCTCGACCTGGCTGTGTGCCAGCGAAGAGAGTTATCCTTGA
CATGAATGCGTCTGTGCTTTCTTCACGTTGCCCACGGAGGACATGCGACCTCAGTAATGAGAAG
GCCTTTGCTGCCTCTTCAGGGACCCTGAGACCGCAGTAGAGAAGAGGGGTGGAGGAGAGCGGTG
TTAAATTACAGTGTTTCCGTAGTGTGTGAGTGTACCGACGTTGGCAGGAAGGAGAGTACACAAG
TAAAGAGTAAAGTATTTTTATGAAACAAATCTTCAATCAAGTATAACATTTTGATGCTTCGCAT
CTAGACTCCTTGTGCTGTCACTATGCCAGCAGCAACTGTAGATCATAGCCAAAGAATTTGTGAA
GTTTGGGCTTGTAACCTGGATGAAGAGATGAAGAAAATCCGTCAAGTTATCCGAAAATATAATT
ATGTTGCTATGGACACCGAGTTTCCAGGCGTTGTTGCAAGGCCCATTGGAGAATTCAGAAGCAA
TGCTGACTATCAGTACCAACTGTTGCGATGTAATGTAGACTTGTTAAAGATAATTCAGCTTGGA
CTGACATTTATGAATGAGCAAGGAGAATACCCTCCAGGAACATCAACTTGGCAGTTTAATTTTA
AATTTAATTTGACGTCTGGGACTGCATTGGGACCTGGGAATCCATATTTTTGGGAGGACATGTA
TGCTCAGGACTCTATAGAGCTACTGACAACGTCTGGCATCCAGTTTAAAAAACATGAGGAGGAA
GGGATTGAGACCCAGTATTTTGCAGAACTTCTTATGACCTCAGGAGTGGTTCTCTGTGAAGGGG
TCAAATGGTTATCATTTCATAGTGGTTATGACTTTGGCTATTTAATCAAAATTCTGACCAACTC
TAACTTGCCTGAAGAAGAGCTTGATTTCTTTGAGATCCTTCGATTATTCTTCCCTGTCATCTAT
GATGTGAAGTACCTCATGAAGAGCTGCAAGAACCTCAAGGGTGGACTGCAGGAAGTTGCTGAGC
AGTTAGAGCTGGAGCGGATAGGACCTCAACACCAGGCAGGATCTGACTCACTGCTTACAGGAAT
GGCCTTTTTCAAAATGAGAGAAATGTTCTTTGAAGATCACATTGATGATGCCAAATACTGTGGC
CACTTATACGGCCTTGGTTCTGGCTCATCCTATGTACAGAACGGCACAGGGAATGCATATGAAG
AGGAAGCCAGCAAGCAGTCGTGACAGGAAATAGTCTTCTTATTTTTATTTTATACGAGTTACAC
ACATGCTTGTATATAGGTTTTATCATCCCTTAAATAATAGGCAATACCTGCCCCTCCTTTGGTA
GCCCTTCTTTTCTGCTTTCAGTAATAAGTATGGCCTTTCTTAGCTATGATCTTAATAAATTAAA
GTACATTCAGGTTAAATCTGGCCTTAATTTAATACACCTCTTATCAAGCTTGTGTGACAAAGCT
ACATTACTGAATAATTTGACAAACTTTGCCTACTTGAGCTTGGTTTTGTTTTTCCCTTTCCTAA
ATTAACTAGCATTGACTGTAATTTATTTCCCTCTTCCGTGCCTCTCCTCCTATTCTGCAGTACT
TATAGGTATTTAAGATTGTGGACCATCAAGTTTGCACTTTATAGAGTGATTTCAATCCTCTATT
TTATCAGAAATTGTGATTTTTCTTGCTCTTAGCTAGAAAAATGACCATCCACCACCTTTTTACA
GTATTTGCTTGTTTTTGACATTCAGAGTACAGCACGTGCATTGTGCAAATTGTTGATTCAACGG
GACTAACAAGAAGACAAGGAACTACTGAAGAGCCTAGTAACTACTGTTTCTGTGTGTAGTGTTT
AACCTTCCGAACACATCTCCTGTCTGTTGGTTTCTAATTGGCATGCATAGGCTGCTATGTGACT
GAAGAATTTCAAACCAGCTTTACACCCTTCAGGAAGAAGCCCTTGCGATTGGAGGTTTCCACTC
TGCCAGAAAGAAACTGGCGTTTAAGATGTGGAACTACAGTTTTATGACAGCAACGCTTCCCTTG
ACCGGCTTCCTTTTACTCCATCACTTTTACCCTTAATGTTTTATTTTATAAACATATTTATGAT
GTTCTTGATTTGTTGACTACGCAAATCAATTTCATTAAAGTCCAAAGATAACAAGTCTTTAGGT
ACATTTTATATCAAATTAAAAATACAAAAAAAAATGTGATTTCATAAATGCTACAAAAATAAAT
AATGGAGAGATTTGGTGCAAAACAACAAAATGCAAAATATATATATAAATACACACATATAGCT
AATAAAATTACCTGAGGAGTGTAATGCTTGTTTATTTTTTTGTGTATATCTTTGCAATCTATTT
TATATATATTGACAAGAGACTGTGAAATATTTAGCCATGCAGAATACGTGACCACACCAGAGCA
TGTGTTGGAAGATTTTGGTGAACATTAACTCTACCCTGAAGTGACGGACTACAAGTTGTAATGT
GTGTTATCTACACTTCAATCAATAATATTAGAAAGTCTCCAACTGTTAGCAACACAGTTCATTT
CCCTTGTACATTCTGTATACATGATACGAAAATGCTGTACCTGGGCGGTCCTTTTTAAACTAAA
CATTATTTGCAAAACAGAGGGTATTATTTGTTTTTAAAGCTTTTGTAAATAAAGGCTTCAAGAA
TGTTTTCCTATA

hide sequence

RefSeq Acc Id:

XM_017600128 ⟹ XP_017455617

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	58,479,273 - 58,498,046 (+)	NCBI
mRatBN7.2	16	51,775,827 - 51,794,581 (+)	NCBI
Rnor_6.0	16	54,899,820 - 54,918,616 (+)	NCBI

Sequence:

show sequence

GCGGCGCGCAGTGATGACGCCACCGCTTTGTACCTGGGACTTCGTTGTGGGAAGGAAATTGAGA
GTGGAGGGCGGTGGCCTACTTCTGAACTAGTAGCTCCTCTTCGCGGTGGTTGGGAGTCAATCTG
ACTCTAGTAAATGCTATCAGCACCCTCGACCTGGCTGTGTGCCAGCGAAGAGAGTTATCCTTGA
CATGAATGCGTCTGTGCTTTCTTCACGTTGCCCACGGAGGACATGCGACCTCAGTACACAAGTA
AAGAGTAAAGTATTTTTATGAAACAAATCTTCAATCAAGTATAACATTTTGATGCTTCGCATCT
AGACTCCTTGTGCTGTCACTATGCCAGCAGCAACTGTAGATCATAGCCAAAGAATTTGTGAAGT
TTGGGCTTGTAACCTGGATGAAGAGATGAAGAAAATCCGTCAAGTTATCCGAAAATATAATTAT
GTTGCTATGGACACCGAGTTTCCAGGCGTTGTTGCAAGGCCCATTGGAGAATTCAGAAGCAATG
CTGACTATCAGTACCAACTGTTGCGATGTAATGTAGACTTGTTAAAGATAATTCAGCTTGGACT
GACATTTATGAATGAGCAAGGAGAATACCCTCCAGGAACATCAACTTGGCAGTTTAATTTTAAA
TTTAATTTGACGTCTGGGACTGCATTGGGACCTGGGAATCCATATTTTTGGGAGGACATGTATG
CTCAGGACTCTATAGAGCTACTGACAACGTCTGGCATCCAGTTTAAAAAACATGAGGAGGAAGG
GATTGAGACCCAGTATTTTGCAGAACTTCTTATGACCTCAGGAGTGGTTCTCTGTGAAGGGGTC
AAATGGTTATCATTTCATAGTGGTTATGACTTTGGCTATTTAATCAAAATTCTGACCAACTCTA
ACTTGCCTGAAGAAGAGCTTGATTTCTTTGAGATCCTTCGATTATTCTTCCCTGTCATCTATGA
TGTGAAGTACCTCATGAAGAGCTGCAAGAACCTCAAGGGTGGACTGCAGGAAGTTGCTGAGCAG
TTAGAGCTGGAGCGGATAGGACCTCAACACCAGGCAGGATCTGACTCACTGCTTACAGGAATGG
CCTTTTTCAAAATGAGAGAAATGTTCTTTGAAGATCACATTGATGATGCCAAATACTGTGGCCA
CTTATACGGCCTTGGTTCTGGCTCATCCTATGTACAGAACGGCACAGGGAATGCATATGAAGAG
GAAGCCAGCAAGCAGTCGTGACAGGAAATAGTCTTCTTATTTTTATTTTATACGAGTTACACAC
ATGCTTGTATATAGGTTTTATCATCCCTTAAATAATAGGCAATACCTGCCCCTCCTTTGGTAGC
CCTTCTTTTCTGCTTTCAGTAATAAGTATGGCCTTTCTTAGCTATGATCTTAATAAATTAAAGT
ACATTCAGGTTAAATCTGGCCTTAATTTAATACACCTCTTATCAAGCTTGTGTGACAAAGCTAC
ATTACTGAATAATTTGACAAACTTTGCCTACTTGAGCTTGGTTTTGTTTTTCCCTTTCCTAAAT
TAACTAGCATTGACTGTAATTTATTTCCCTCTTCCGTGCCTCTCCTCCTATTCTGCAGTACTTA
TAGGTATTTAAGATTGTGGACCATCAAGTTTGCACTTTATAGAGTGATTTCAATCCTCTATTTT
ATCAGAAATTGTGATTTTTCTTGCTCTTAGCTAGAAAAATGACCATCCACCACCTTTTTACAGT
ATTTGCTTGTTTTTGACATTCAGAGTACAGCACGTGCATTGTGCAAATTGTTGATTCAACGGGA
CTAACAAGAAGACAAGGAACTACTGAAGAGCCTAGTAACTACTGTTTCTGTGTGTAGTGTTTAA
CCTTCCGAACACATCTCCTGTCTGTTGGTTTCTAATTGGCATGCATAGGCTGCTATGTGACTGA
AGAATTTCAAACCAGCTTTACACCCTTCAGGAAGAAGCCCTTGCGATTGGAGGTTTCCACTCTG
CCAGAAAGAAACTGGCGTTTAAGATGTGGAACTACAGTTTTATGACAGCAACGCTTCCCTTGAC
CGGCTTCCTTTTACTCCATCACTTTTACCCTTAATGTTTTATTTTATAAACATATTTATGATGT
TCTTGATTTGTTGACTACGCAAATCAATTTCATTAAAGTCCAAAGATAACAAGTCTTTAGGTAC
ATTTTATATCAAATTAAAAATACAAAAAAAAATGTGATTTCATAAATGCTACAAAAATAAATAA
TGGAGAGATTTGGTGCAAAACAACAAAATGCAAAATATATATATAAATACACACATATAGCTAA
TAAAATTACCTGAGGAGTGTAATGCTTGTTTATTTTTTTGTGTATATCTTTGCAATCTATTTTA
TATATATTGACAAGAGACTGTGAAATATTTAGCCATGCAGAATACGTGACCACACCAGAGCATG
TGTTGGAAGATTTTGGTGAACATTAACTCTACCCTGAAGTGACGGACTACAAGTTGTAATGTGT
GTTATCTACACTTCAATCAATAATATTAGAAAGTCTCCAACTGTTAGCAACACAGTTCATTTCC
CTTGTACATTCTGTATACATGATACGAAAATGCTGTACCTGGGCGGTCCTTTTTAAACTAAACA
TTATTTGCAAAACAGAGGGTATTATTTGTTTTTAAAGCTTTTGTAAATAAAGGCTTCAAGAATG
TTTTCCTATA

hide sequence

RefSeq Acc Id:

XM_039094534 ⟹ XP_038950462

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	58,478,948 - 58,498,046 (+)	NCBI
mRatBN7.2	16	51,775,479 - 51,794,581 (+)	NCBI

RefSeq Acc Id:

XM_039094537 ⟹ XP_038950465

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	58,478,948 - 58,498,046 (+)	NCBI
mRatBN7.2	16	51,775,464 - 51,794,581 (+)	NCBI

RefSeq Acc Id:

XM_063275431 ⟹ XP_063131501

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	58,479,270 - 58,498,046 (+)	NCBI

RefSeq Acc Id:

XM_063275432 ⟹ XP_063131502

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	58,479,270 - 58,498,046 (+)	NCBI

RefSeq Acc Id:

XM_063275433 ⟹ XP_063131503

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	58,479,274 - 58,498,046 (+)	NCBI

RefSeq Acc Id:

XM_063275434 ⟹ XP_063131504

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	58,479,273 - 58,498,046 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100783	(Get FASTA)	NCBI Sequence Viewer
	XP_017455614	(Get FASTA)	NCBI Sequence Viewer
	XP_017455615	(Get FASTA)	NCBI Sequence Viewer
	XP_017455616	(Get FASTA)	NCBI Sequence Viewer
	XP_017455617	(Get FASTA)	NCBI Sequence Viewer
	XP_038950462	(Get FASTA)	NCBI Sequence Viewer
	XP_038950465	(Get FASTA)	NCBI Sequence Viewer
	XP_063131501	(Get FASTA)	NCBI Sequence Viewer
	XP_063131502	(Get FASTA)	NCBI Sequence Viewer
	XP_063131503	(Get FASTA)	NCBI Sequence Viewer
	XP_063131504	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI67766	(Get FASTA)	NCBI Sequence Viewer
	EDL78815	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000016882
	ENSRNOP00000016882.4
	ENSRNOP00000092791
	ENSRNOP00000092791.1

RefSeq Acc Id:

NP_001100783 ⟸ NM_001107313

- UniProtKB:

B3DMA5 (UniProtKB/TrEMBL), A6JPV7 (UniProtKB/TrEMBL), F7F9V0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQL
LRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSGIQFKKHEE
EGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVI
YDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYC
GHLYGLGSGSSYVQNGTGNAYEEEASKQS

hide sequence

RefSeq Acc Id:

XP_017455614 ⟸ XM_017600125

- Peptide Label:

isoform X1

- Sequence:

show sequence

MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQL
LRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTSGTALGPGNPYFWEDMYAQDSIEL
LTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEEL
DFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMRE
MFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEASKQS

hide sequence

RefSeq Acc Id:

XP_017455616 ⟸ XM_017600127

- Peptide Label:

isoform X1

- Sequence:

show sequence

MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQL
LRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTSGTALGPGNPYFWEDMYAQDSIEL
LTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEEL
DFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMRE
MFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEASKQS

hide sequence

RefSeq Acc Id:

XP_017455615 ⟸ XM_017600126

- Peptide Label:

isoform X1

- Sequence:

show sequence

MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQL
LRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTSGTALGPGNPYFWEDMYAQDSIEL
LTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEEL
DFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMRE
MFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEASKQS

hide sequence

RefSeq Acc Id:

XP_017455617 ⟸ XM_017600128

- Peptide Label:

isoform X1

- Sequence:

show sequence

MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQL
LRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTSGTALGPGNPYFWEDMYAQDSIEL
LTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEEL
DFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMRE
MFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEASKQS

hide sequence

RefSeq Acc Id:

ENSRNOP00000016882 ⟸ ENSRNOT00000016882

RefSeq Acc Id:	XP_038950465 ⟸ XM_039094537
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6AEC4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038950462 ⟸ XM_039094534
- Peptide Label:	isoform X3

RefSeq Acc Id:

ENSRNOP00000092791 ⟸ ENSRNOT00000099744

RefSeq Acc Id:	XP_063131502 ⟸ XM_063275432
- Peptide Label:	isoform X2
- UniProtKB:	A6JPV7 (UniProtKB/TrEMBL), B3DMA5 (UniProtKB/TrEMBL), F7F9V0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131501 ⟸ XM_063275431
- Peptide Label:	isoform X2
- UniProtKB:	A6JPV7 (UniProtKB/TrEMBL), B3DMA5 (UniProtKB/TrEMBL), F7F9V0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131504 ⟸ XM_063275434
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6AEC4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131503 ⟸ XM_063275433
- Peptide Label:	isoform X2
- UniProtKB:	A6JPV7 (UniProtKB/TrEMBL), B3DMA5 (UniProtKB/TrEMBL), F7F9V0 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B3DMA5-F1-model_v2	AlphaFold	B3DMA5	1-285	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700123

Promoter ID:

EPDNEW_R10647

Type:

initiation region

Name:

Cnot7_1

Description:

CCR4-NOT transcription complex, subunit 7

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	16	54,899,475 - 54,899,535	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305313	AgrOrtholog
BioCyc Gene	G2FUF-11243	BioCyc
Ensembl Genes	ENSRNOG00000012263	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000016882	ENTREZGENE
	ENSRNOT00000016882.6	UniProtKB/TrEMBL
	ENSRNOT00000099744.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.420.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7455944	IMAGE-MGC_LOAD
InterPro	CNOT7/CNOT8/Pop2	UniProtKB/TrEMBL
	PolynucTfrase_RNaseH_fold	UniProtKB/TrEMBL
	RNase_CAF1	UniProtKB/TrEMBL
	RNaseH_sf	UniProtKB/TrEMBL
KEGG Report	rno:306492	UniProtKB/TrEMBL
MGC_CLONE	MGC:187537	IMAGE-MGC_LOAD
NCBI Gene	306492	ENTREZGENE
PANTHER	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 7	UniProtKB/TrEMBL
	PTHR10797	UniProtKB/TrEMBL
Pfam	CAF1	UniProtKB/TrEMBL
PhenoGen	Cnot7	PhenoGen
RatGTEx	ENSRNOG00000012263	RatGTEx
Superfamily-SCOP	RNaseH_fold	UniProtKB/TrEMBL
UniProt	A0A8I6AEC4	ENTREZGENE, UniProtKB/TrEMBL
	A6JPV7	ENTREZGENE, UniProtKB/TrEMBL
	B3DMA5	ENTREZGENE
	F7F9V0	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	B3DMA5	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Cnot7	CCR4-NOT transcription complex, subunit 7	Cnot7_predicted	CCR4-NOT transcription complex, subunit 7 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Cnot7_predicted	CCR4-NOT transcription complex, subunit 7 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

RGD Manual Annotations

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

RGD Manual Annotations

Imported Annotations - KEGG (archival)