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MITOCHONDRIA DYNAMICS PATHWAY (PW:0001961)
Description
The double membrane-bound mitochondria organelles play essential roles in cellular homeostasis. In addition to the major function of ATP production in the oxidative phosphorylation (OXPHOS) pathway, mitochondria are the site of other important metabolic pathway such as fatty acid oxidation, citric acid cycle and urea cycle, heme and iron-sulfur cluster biosynthesis. They also provide for calcium storage and signaling, and have a central role in apoptosis. The mitochondrial distribution/mass vary between cells and even within a cell, depending on the metabolic states. Cardiomyocytes and neurons, due to their high energy demands, have greater amounts. Mitochondria are dynamic and form reticular networks to assure efficient distribution of mitochondrial DNA (mtDNA) and proteins. The fission and fusion of mitochondria are features of mitochondria dynamics along with their trafficking along microtubule routes in higher organisms (actin in yeast). Mitochondria dynamics and the mitochondrial autophagy (mitophagy) pathways are intimately connected. Fission is believed to be a pre-requisite for mitophagy, allowing for the delineation of individual, damaged mitochondria while mitophagy targets components of the fusion apparatus and of transport for degradation. Of the ~1,500 mitochondrial proteins, only 13 are encoded in the mtDNA, the rest (~99%), have to be imported. As such, the mitochondrial protein import pathway impacts on every aspect of mitochondrial function, including mitochondria dynamics and autophagy. The pathways of mitochondria dynamics are presented here.
The fission and fusion of mitochondria are ordered, energy-intensive events. Fission is thought to occur both in a symmetric fashion that allows mitochondria to divide and grow/expand or asymmetrically, promoting isolation of defective mitochondria. Fission may occur shortly after a fusion event (in transient fusion) to allow segregation of mitochondria with healthy membrane potential from those with less than optimal membranes. The mitochondria with the healthy membrane could then undergo fusion. The main players in both the fission and the fusion pathways are dynamin-related GTPases, aided by a selected assortment other proteins that could act as receptors/scaffolds, or adaptors/effectors. Distribution of mitochondria, the transport of organelles to sites of energy demand occurs along the cytoskeleton, via microtubules. The neuronal synapses have some of the highest energy demands; the unique structure of neurons poses unique challenges for molecular transport and the balance between mobile and stationary mitochondria
Mitochondria fission pathway
In mammals, the main effector of fission is the Dnm1l (known as Drp1) GTPase. The cytosolic protein needs to be recruited to the outer mitochondrial membrane (OMM); the factor leading to Dnm1l translocation may differ depending on the events dictating fission. The protein contains an N-terminal GTPase domain, middle and variable domains, followed by the C-terminal GTP effector domain (GED). The GED interacts with the middle of adjacent molecules assembling into ring-like, spiral complexes that constrict in a GTP-dependent manner and promote scission and separation (click to link to a structural page). Several OMM proteins, such as Fis1, Mtfp1 (Mtp18), Gdap1 or Sh3glb1 (endophilin B1), are known to play a role in Dnm1l mediated fission, although the mechanisms are not well understood. Others, like Mff, Mief2 (MiD49) and Mief1 (MiD51) have been proposed to play a role in recruitment and activation. They interact with Dnml1 but the exact role of the interaction needs to be determined. Post-translational modifications of Dnml1 like phosphorylation, sumoylation and ubiquitination can affect its function, translocation and/or fate; their precise role is being investigated. Constriction/fission sites are often marked by mitochondria-Endoplasmic Reticulum (ER) contacts. Mutations in several components of the fission pathway have been associated with human diseases.
Mitochondria fusion pathway
Fusion is dependent upon the mitofusin GTPases Mfn1 and 2 at the outer mitochondrial membrane (OMM) and Opa1 at the inner mitochondrial membrane (IMM). Mfn1/2 span twice the OMM thus having the C-terminal coiled-coil domain and the N-terminal GTPase domain exposed to the cytosol. Mitofusins form homo- and hetero-oligomers via their coiled coil domain; trans-association on adjacent mitochondria mediates fusion ( click to link to a structural page). The two proteins are not equivalent: Mfn1 has a higher GTP-dependent tethering activity than Mfn2, Mfn2 is enriched at ER-mitochondria interface. Mitchondrial phospholipase D hydrolyzes cardiolipin (CL)on OMM; the resulting phosphatidic acid can induce membrane curvature and is known to promote fusion, although the mechanisms are not well understood. There are several isoforms of Opa1 and both the long and short isoforms play a role in fusion. CL, the signature lipid of IMM, increases the GTPase activity of IMM resident Opa1. In addition to fusion, Opa1 is involved in the maintenance of mitochondria cristae. Prohibitin2 and Stoml2 (known as Slp-2_ are thought to act as scaffolds. Parkin, in the mitochondrial autophagy pathway (mitophagy), targets Mfn1/2 to proteosomal degradation, thus removing the inhibitory effect fusion would have on mitophagy. Fusion can be complete or transient; a fission event will follow fusion termed 'kiss-and-run'. Mutations in several components of the fusion pathway have been associated with human diseases.
Mitochondria transport pathway
Transport and distribution of mitochondria assure that the metabolic needs of the cells are properly met. Mitochondria delivery to neuronal synapses - sites of the highest energy demand, provides a paradigm. The provision or replenishment of functional mitochondria, removal of the dysfunctional, damaged mitochondria and immobilization of motile mitochondria, as necessary are important aspects of mitochondria transport. Movement along the microtubules (MT) is mediated by motor proteins that use the power derived from ATP hydrolysis to move their cargo; kinesins drive anterograde movement, cytoplasmic dyneins drive the retrograde one. The polarity of MT provides directional cues; in neuronal axons, MT have their plus ends oriented distally and the minus ends oriented towards the soma. Motor proteins rely on adaptor proteins to link to mitochondria. A major adaptor is Trak/Milton (Trak1 and 2) with binding sites for kinesin and dynein, thus being able to promote bi-directional movement. Several other adaptors have been suggested. Miro (Rhot1 and 2) is an OMM resident that anchors the transport system(s) to mitochondria. The two are members of the Rho family of GTPases and bind Trak/Milton. Immobilization of motile mitochondria at firing synapses is achieved via anchoring by syntaphilin and by Miro calcium-sensing that inactivates or disassemble the transport complex (Miro proteins also have EF-hands, Ca-binding motifs). In addition to providing the necessary ATP, the stationary mitochondria also acts as a calcium buffering system. Miro is a target of Pink1-Parkin, the main quality control system of mitochondrial autophagy. Depolarized mitochondria are not delivered to the terminals and studies suggest that turnover of Miro promotes retrograde movement to the soma , the site of mature acidic lysosome. Fusion of the autophagosome with the lysosome is the final stage of autophagy followed by cargo degradation. The retrograde transport is mediated by the dynein complex and Trak/Milton may be the adaptor. Dynein is a multisubunit complex consisting of the heavy chain containing the motor domain and several intermediate and light chain subunits. Dynactin, a multisubunit complex, binds dynein and MT via its large subunit, Dctn1, known as p150; dynein and dynactin are necessary for retrograde transport. Defective mitochondria transport has been associated with neurodegenerative diseases.
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Pathway Diagram:
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Genes in Pathway:
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Pink1
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PTEN induced kinase 1
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IMP
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RGD |
PMID:21613270 |
RGD:12903967 |
NCBI chr 5:155,813,838...155,825,950
Ensembl chr 5:155,813,838...155,825,950
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Dnm1l
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dynamin 1-like
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ISO
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RGD |
PMID:21683788 PMID:24442478 |
RGD:10402101, RGD:10402102 |
NCBI chr11:98,084,049...98,135,663
Ensembl chr11:98,085,397...98,137,420
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Fis1
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fission, mitochondrial 1
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ISO
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RGD |
PMID:21683788 PMID:24442478 |
RGD:10402101, RGD:10402102 |
NCBI chr12:25,345,239...25,360,135
Ensembl chr12:25,345,239...25,349,335
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Gdap1
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ganglioside-induced differentiation-associated-protein 1
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ISO
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RGD |
PMID:21683788 PMID:24442478 |
RGD:10402101, RGD:10402102 |
NCBI chr 5:6,715,935...6,735,013
Ensembl chr 5:6,715,935...6,735,313
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Mff
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mitochondrial fission factor
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ISO
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RGD |
PMID:21683788 PMID:24442478 |
RGD:10402101, RGD:10402102 |
NCBI chr 9:91,455,931...91,484,171
Ensembl chr 9:91,455,871...91,484,171
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Mief1
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mitochondrial elongation factor 1
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ISO
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RGD |
PMID:21683788 PMID:24442478 |
RGD:10402101, RGD:10402102 |
NCBI chr 7:113,666,918...113,679,550
Ensembl chr 7:113,666,901...113,683,977
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Mief2
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mitochondrial elongation factor 2
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ISO
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RGD |
PMID:21683788 PMID:24442478 |
RGD:10402101, RGD:10402102 |
NCBI chr10:45,907,576...45,913,658
Ensembl chr10:45,908,706...45,913,658
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Mtfp1
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mitochondrial fission process 1
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ISO
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RGD |
PMID:21683788 PMID:24442478 |
RGD:10402101, RGD:10402102 |
NCBI chr14:83,192,013...83,195,853
Ensembl chr14:83,192,021...83,195,927
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Sh3glb1
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SH3 domain -containing GRB2-like endophilin B1
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ISO
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RGD |
PMID:21683788 PMID:24442478 |
RGD:10402101, RGD:10402102 |
NCBI chr 2:236,411,194...236,445,225
Ensembl chr 2:236,410,436...236,445,140
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Mfn1
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mitofusin 1
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ISO
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RGD |
PMID:21683788 PMID:24442478 |
RGD:10402101, RGD:10402102 |
NCBI chr 2:117,240,525...117,288,017
Ensembl chr 2:117,241,759...117,290,190
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Mfn2
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mitofusin 2
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ISO
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RGD |
PMID:21683788 PMID:24442478 |
RGD:10402101, RGD:10402102 |
NCBI chr 5:163,587,463...163,617,363
Ensembl chr 5:163,587,463...163,618,495
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Opa1
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OPA1, mitochondrial dynamin like GTPase
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ISO IMP
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RGD |
PMID:21683788 PMID:21613270 PMID:24442478 |
RGD:10402101, RGD:12903967, RGD:10402102 |
NCBI chr11:84,612,943...84,690,025
Ensembl chr11:84,615,340...84,689,955
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Phb2
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prohibitin 2
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ISO
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RGD |
PMID:21683788 |
RGD:10402101 |
NCBI chr 4:159,203,948...159,208,561
Ensembl chr 4:159,203,926...159,209,231
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Pld6
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phospholipase D family, member 6
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ISO
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RGD |
PMID:21683788 |
RGD:10402101 |
NCBI chr10:45,078,081...45,080,732
Ensembl chr10:45,077,080...45,087,160
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Stoml2
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stomatin like 2
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ISO
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RGD |
PMID:21683788 |
RGD:10402101 |
NCBI chr 5:62,052,042...62,055,639
Ensembl chr 5:62,052,045...62,055,670
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Actb
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actin, beta
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ISO
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RGD |
PMID:15473859 |
RGD:10402155 |
NCBI chr12:16,776,664...16,779,634
Ensembl chr12:16,776,661...16,780,242
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Actr10
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actin related protein 10
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ISO
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RGD |
PMID:15473859 |
RGD:10402155 |
NCBI chr 6:95,182,082...95,208,325
Ensembl chr 6:95,182,111...95,209,021
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Actr1a
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actin related protein 1A
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ISO
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RGD |
PMID:15473859 |
RGD:10402155 |
NCBI chr 1:255,179,241...255,199,009
Ensembl chr 1:255,179,242...255,199,459
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Capza1
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capping actin protein of muscle Z-line subunit alpha 1
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ISO
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RGD |
PMID:15473859 |
RGD:10402155 |
NCBI chr 2:195,008,035...195,053,100
Ensembl chr 2:195,008,039...195,053,100
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Dctn1
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dynactin subunit 1
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ISO
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RGD |
PMID:25612908 PMID:15473859 |
RGD:10402141, RGD:10402155 |
NCBI chr 4:117,228,722...117,261,528
Ensembl chr 4:117,219,349...117,261,528
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Dctn2
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dynactin subunit 2
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ISO
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RGD |
PMID:15473859 |
RGD:10402155 |
NCBI chr 7:64,977,338...64,992,875
Ensembl chr 7:64,977,363...64,992,873
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Dctn3
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dynactin subunit 3
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ISO
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RGD |
PMID:15473859 |
RGD:10402155 |
NCBI chr 5:61,676,950...61,684,958
Ensembl chr 5:61,676,950...61,684,903
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Dctn4
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dynactin subunit 4
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ISO
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RGD |
PMID:15473859 |
RGD:10402155 |
NCBI chr18:56,251,187...56,279,844
Ensembl chr18:56,252,780...56,279,842
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Dctn5
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dynactin subunit 5
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ISO
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RGD |
PMID:15473859 |
RGD:10402155 |
NCBI chr 1:186,120,415...186,137,146
Ensembl chr 1:186,119,913...186,137,146
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Dctn6
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dynactin subunit 6
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ISO
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RGD |
PMID:15473859 |
RGD:10402155 |
NCBI chr16:64,780,759...64,799,766
Ensembl chr16:64,780,735...64,801,060
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Dync1h1
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dynein cytoplasmic 1 heavy chain 1
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ISO
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RGD |
PMID:25612908 PMID:21936784 |
RGD:10402141, RGD:10402142 |
NCBI chr 6:135,436,375...135,502,117
Ensembl chr 6:135,430,750...135,502,116
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Dync1i1
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dynein cytoplasmic 1 intermediate chain 1
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ISO
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RGD |
PMID:21936784 |
RGD:10402142 |
NCBI chr 4:34,819,313...35,132,647
Ensembl chr 4:34,819,430...35,142,319
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Dync1i2
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dynein cytoplasmic 1 intermediate chain 2
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ISO
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RGD |
PMID:21936784 |
RGD:10402142 |
NCBI chr 3:76,441,621...76,492,782
Ensembl chr 3:76,424,469...76,492,782
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Dync1li1
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dynein cytoplasmic 1 light intermediate chain 1
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ISO
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RGD |
PMID:21936784 |
RGD:10402142 |
NCBI chr 8:123,254,823...123,288,496
Ensembl chr 8:123,254,859...123,289,167
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Dync1li2
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dynein, cytoplasmic 1 light intermediate chain 2
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ISO
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RGD |
PMID:21936784 |
RGD:10402142 |
NCBI chr19:538,207...561,110
Ensembl chr19:538,211...561,107
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Dynll1
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dynein light chain LC8-type 1
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ISO
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RGD |
PMID:21936784 |
RGD:10402142 |
NCBI chr12:46,945,291...46,976,867
Ensembl chr12:46,973,050...46,976,861
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Dynll2
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dynein light chain LC8-type 2
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ISO
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RGD |
PMID:21936784 |
RGD:10402142 |
NCBI chr10:73,264,260...73,283,042
Ensembl chr10:73,264,261...73,272,285
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Dynlrb1
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dynein light chain roadblock-type 1
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ISO
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RGD |
PMID:21936784 |
RGD:10402142 |
NCBI chr 3:164,197,892...164,224,409
Ensembl chr 3:164,202,953...164,224,409
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Dynlrb2
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dynein light chain roadblock-type 2
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ISO
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RGD |
PMID:21936784 |
RGD:10402142 |
NCBI chr19:61,428,782...61,440,331
Ensembl chr19:61,429,065...61,441,071
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Dynlt1
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dynein light chain Tctex-type 1
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ISO
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RGD |
PMID:21936784 |
RGD:10402142 |
NCBI chr 1:49,292,093...49,299,051
Ensembl chr 1:49,282,243...49,298,951
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Dynlt3
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dynein light chain Tctex-type 3
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ISO
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RGD |
PMID:21936784 |
RGD:10402142 |
NCBI chr X:16,000,425...16,009,632
Ensembl chr X:16,000,395...16,009,627
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Fez1
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fasciculation and elongation protein zeta 1
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ISO
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RGD |
PMID:25612908 |
RGD:10402141 |
NCBI chr 8:44,733,288...44,778,519
Ensembl chr 8:44,733,300...44,784,097
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Kif1b
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kinesin family member 1B
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ISO
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RGD |
PMID:25612908 |
RGD:10402141 |
NCBI chr 5:164,890,778...165,025,848
Ensembl chr 5:164,894,763...165,008,841
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Kif5a
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kinesin family member 5A
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ISO
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RGD |
PMID:25612908 |
RGD:10402141 |
NCBI chr 7:64,937,210...64,974,339
Ensembl chr 7:64,934,740...64,978,272
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Kif5b
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kinesin family member 5B
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ISO
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RGD |
PMID:25612908 |
RGD:10402141 |
NCBI chr17:56,185,386...56,222,990
Ensembl chr17:56,185,380...56,223,008
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Kif5c
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kinesin family member 5C
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ISO
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RGD |
PMID:25612908 |
RGD:10402141 |
NCBI chr 3:54,441,266...54,591,630
Ensembl chr 3:54,441,310...54,594,813
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Ranbp2
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RAN binding protein 2
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ISO
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RGD |
PMID:25612908 |
RGD:10402141 |
NCBI chr20:26,984,520...27,036,573
Ensembl chr20:26,985,275...27,036,571
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Rhot1
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ras homolog family member T1
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ISO
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RGD |
PMID:25612908 |
RGD:10402141 |
NCBI chr10:65,685,687...65,760,682
Ensembl chr10:65,696,571...65,760,681
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Rhot2
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ras homolog family member T2
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ISO
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RGD |
PMID:25612908 |
RGD:10402141 |
NCBI chr10:15,363,467...15,369,263
Ensembl chr10:15,361,726...15,369,006
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Snph
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syntaphilin
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ISO
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RGD |
PMID:25612908 |
RGD:10402141 |
NCBI chr 3:160,558,929...160,603,636
Ensembl chr 3:160,560,097...160,599,728
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Sybu
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syntabulin
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ISO
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RGD |
PMID:25612908 |
RGD:10402141 |
NCBI chr 7:77,731,662...77,833,413
Ensembl chr 7:77,731,605...77,833,686
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Trak1
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trafficking kinesin protein 1
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ISO
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RGD |
PMID:25612908 |
RGD:10402141 |
NCBI chr 8:129,861,967...130,016,870
Ensembl chr 8:129,861,977...130,016,870
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Trak2
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trafficking kinesin protein 2
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ISO
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RGD |
PMID:25612908 |
RGD:10402141 |
NCBI chr 9:67,842,680...67,909,786
Ensembl chr 9:67,842,683...67,908,158
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