Kif1b (kinesin family member 1B) - Rat Genome Database

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Gene: Kif1b (kinesin family member 1B) Rattus norvegicus
Analyze
Symbol: Kif1b
Name: kinesin family member 1B
RGD ID: 621520
Description: Enables several functions, including ATP hydrolysis activity; microtubule motor activity; and scaffold protein binding activity. Involved in several processes, including cellular response to nerve growth factor stimulus; dense core granule cytoskeletal transport; and response to rotenone. Located in several cellular components, including cytoplasmic vesicle; mitochondrion; and neuron projection. Biomarker of amyotrophic lateral sclerosis and synucleinopathy. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2A1; carcinoma (multiple); multiple sclerosis; neuroblastoma; and pheochromocytoma. Orthologous to human KIF1B (kinesin family member 1B); PARTICIPATES IN mitochondria transport pathway; INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 3,3',5-triiodo-L-thyronine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: kinesin-family protein KIF1Bbeta3; kinesin-like protein KIF1B
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25159,607,697 - 159,742,778 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl5159,561,271 - 159,742,778 (-)Ensembl
Rnor_6.05165,994,803 - 166,133,497 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5165,938,576 - 166,133,491 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05169,643,325 - 169,780,881 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45166,250,225 - 166,381,782 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15166,260,412 - 166,391,970 (-)NCBI
Celera5157,882,642 - 158,013,175 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-dexrazoxane  (ISO)
1,2-dimethylhydrazine  (ISO)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (ISO)
17alpha-ethynylestradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP,ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
3,3',5-triiodo-L-thyronine  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
4-vinylcyclohexene dioxide  (ISO)
acetamide  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
ammonium chloride  (EXP)
atrazine  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dibutyl phthalate  (ISO)
dimercaprol  (ISO)
dimethylarsinic acid  (EXP)
diuron  (EXP)
doxorubicin  (ISO)
ethanol  (ISO)
fenvalerate  (EXP)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
glycine betaine  (EXP)
hydrogen peroxide  (ISO)
hypochlorous acid  (ISO)
indometacin  (ISO)
isoprenaline  (ISO)
L-ascorbic acid  (EXP)
lead diacetate  (ISO)
maneb  (ISO)
MeIQx  (ISO)
menadione  (ISO)
methoxychlor  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
nickel atom  (EXP)
nickel sulfate  (EXP)
paraquat  (ISO)
PCB138  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
propiconazole  (ISO)
pyridaben  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
retinyl acetate  (ISO)
rotenone  (EXP)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sunitinib  (ISO)
testosterone  (ISO)
theophylline  (ISO)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
uranium atom  (ISO)
urethane  (ISO)
valproic acid  (ISO)
venlafaxine hydrochloride  (EXP)
vincaleukoblastine  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
1. Aulchenko YS, etal., Nat Genet. 2008 Dec;40(12):1402-3. doi: 10.1038/ng.251. Epub 2008 Nov 9.
2. Chen JH, etal., World J Gastroenterol. 2016 Apr 28;22(16):4183-90. doi: 10.3748/wjg.v22.i16.4183.
3. Chen ZX, etal., Cancer Discov. 2014 Apr;4(4):434-51. doi: 10.1158/2159-8290.CD-13-0362. Epub 2014 Jan 27.
4. Chung CY, etal., J Neurosci. 2009 Mar 18;29(11):3365-73. doi: 10.1523/JNEUROSCI.5427-08.2009.
5. Faire K, etal., Eur J Cell Biol 1998 Sep;77(1):27-34.
6. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
7. GOA data from the GO Consortium
8. Gumy LF, etal., Neuron. 2017 Apr 19;94(2):347-362.e7. doi: 10.1016/j.neuron.2017.03.046.
9. International Multiple Sclerosis Genetics Consortium (IMSGC), etal., Nat Genet. 2010 Jun;42(6):469-70; author reply 470-1. doi: 10.1038/ng0610-469.
10. Lin MY and Sheng ZH, Exp Cell Res. 2015 May 15;334(1):35-44. doi: 10.1016/j.yexcr.2015.01.004. Epub 2015 Jan 19.
11. Matsushita M, etal., Traffic. 2004 Mar;5(3):140-51.
12. Matsushita M, etal., Traffic. 2009 Nov;10(11):1647-54. doi: 10.1111/j.1600-0854.2009.00975.x. Epub 2009 Aug 10.
13. Maximino JR, etal., Front Cell Neurosci. 2014 May 26;8:148. doi: 10.3389/fncel.2014.00148. eCollection 2014.
14. Melo TQ, etal., Cell Mol Neurobiol. 2013 Apr;33(3):327-35. doi: 10.1007/s10571-012-9898-z. Epub 2012 Dec 22.
15. MGD data from the GO Consortium
16. Mok H, etal., J Neurosci. 2002 Jul 1;22(13):5253-8.
17. Nakamura N, etal., J Biochem. 2002 Sep;132(3):483-91.
18. Nangaku M, etal., Cell. 1994 Dec 30;79(7):1209-20.
19. NCBI rat LocusLink and RefSeq merged data July 26, 2002
20. OMIM Disease Annotation Pipeline
21. Pantelidou M, etal., Neurobiol Dis. 2007 Jun;26(3):577-89. Epub 2007 Feb 16.
22. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
23. RGD automated import pipeline for gene-chemical interactions
24. Shi TY, etal., Tumour Biol. 2015 Sep;36(9):6919-27. doi: 10.1007/s13277-015-3394-2. Epub 2015 Apr 9.
25. Tan Z, etal., Cell Death Differ. 2007 Oct;14(10):1721-32. Epub 2007 Jun 15.
26. Yang SZ, etal., World J Gastroenterol. 2015 Jul 21;21(27):8418-24. doi: 10.3748/wjg.v21.i27.8418.
27. Zhao C, etal., Cell. 2001 Jun 1;105(5):587-97.
Additional References at PubMed
PMID:7477295   PMID:16396499   PMID:18614015  


Genomics

Comparative Map Data
Kif1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25159,607,697 - 159,742,778 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl5159,561,271 - 159,742,778 (-)Ensembl
Rnor_6.05165,994,803 - 166,133,497 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5165,938,576 - 166,133,491 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05169,643,325 - 169,780,881 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45166,250,225 - 166,381,782 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15166,260,412 - 166,391,970 (-)NCBI
Celera5157,882,642 - 158,013,175 (-)NCBICelera
Cytogenetic Map5q36NCBI
KIF1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl110,210,570 - 10,381,603 (+)EnsemblGRCh38hg38GRCh38
GRCh38110,210,570 - 10,381,603 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37110,270,628 - 10,441,661 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36110,193,418 - 10,364,242 (+)NCBINCBI36hg18NCBI36
Build 34110,205,096 - 10,301,081NCBI
Celera19,382,204 - 9,553,049 (+)NCBI
Cytogenetic Map1p36.22NCBI
HuRef19,426,051 - 9,595,334 (+)NCBIHuRef
CHM1_1110,259,738 - 10,430,539 (+)NCBICHM1_1
Kif1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394149,260,776 - 149,392,762 (-)NCBIGRCm39mm39
GRCm39 Ensembl4149,260,776 - 149,392,150 (-)Ensembl
GRCm384149,176,319 - 149,307,773 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4149,176,319 - 149,307,693 (-)EnsemblGRCm38mm10GRCm38
MGSCv374148,550,430 - 148,681,807 (-)NCBIGRCm37mm9NCBIm37
MGSCv364148,020,121 - 148,151,498 (-)NCBImm8
Celera4151,442,205 - 151,574,627 (-)NCBICelera
Cytogenetic Map4E2NCBI
cM Map479.05NCBI
Kif1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554863,370,596 - 3,489,052 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554863,366,791 - 3,503,845 (-)NCBIChiLan1.0ChiLan1.0
KIF1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1110,198,997 - 10,367,786 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl110,198,997 - 10,364,577 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v018,969,910 - 9,141,964 (+)NCBIMhudiblu_PPA_v0panPan3
KIF1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1563,367,294 - 63,516,388 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl563,376,820 - 63,513,476 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha563,381,068 - 63,529,773 (+)NCBI
ROS_Cfam_1.0563,595,399 - 63,744,489 (+)NCBI
UMICH_Zoey_3.1563,615,981 - 63,765,084 (+)NCBI
UNSW_CanFamBas_1.0563,453,791 - 63,602,866 (+)NCBI
UU_Cfam_GSD_1.0563,859,665 - 64,008,893 (+)NCBI
Kif1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505833,605,878 - 33,737,269 (+)NCBI
SpeTri2.0NW_0049366234,091,093 - 4,222,510 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIF1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl670,495,144 - 70,663,463 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1670,495,143 - 70,663,464 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2664,444,239 - 64,596,281 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KIF1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120121,393,478 - 121,567,704 (-)NCBI
ChlSab1.1 Ensembl20121,395,836 - 121,546,803 (-)Ensembl
Vero_WHO_p1.0NW_02366605425,309,532 - 25,484,861 (-)NCBI
Kif1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248182,282,999 - 2,428,586 (-)NCBI

Position Markers
RH129337  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25159,665,942 - 159,666,122 (+)MAPPERmRatBN7.2
Rnor_6.05166,049,322 - 166,049,501NCBIRnor6.0
Rnor_5.05169,697,080 - 169,697,259UniSTSRnor5.0
RGSC_v3.45166,305,073 - 166,305,252UniSTSRGSC3.4
Celera5157,936,739 - 157,936,918UniSTS
RH 3.4 Map51110.6UniSTS
Cytogenetic Map5q36UniSTS
RH142507  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25159,668,360 - 159,668,577 (+)MAPPERmRatBN7.2
Rnor_6.05166,051,740 - 166,051,956NCBIRnor6.0
Rnor_5.05169,699,498 - 169,699,714UniSTSRnor5.0
RGSC_v3.45166,307,491 - 166,307,707UniSTSRGSC3.4
Celera5157,939,157 - 157,939,373UniSTS
RH 3.4 Map51110.6UniSTS
Cytogenetic Map5q36UniSTS
BE107622  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25159,645,448 - 159,645,607 (+)MAPPERmRatBN7.2
Rnor_6.05166,028,829 - 166,028,987NCBIRnor6.0
Rnor_5.05169,677,398 - 169,677,556UniSTSRnor5.0
RGSC_v3.45166,283,992 - 166,284,150UniSTSRGSC3.4
Celera5157,916,249 - 157,916,407UniSTS
RH 3.4 Map51110.6UniSTS
Cytogenetic Map5q36UniSTS
RH137798  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25159,612,894 - 159,613,034 (+)MAPPERmRatBN7.2
Rnor_6.05165,996,274 - 165,996,413NCBIRnor6.0
Rnor_5.05169,644,850 - 169,644,989UniSTSRnor5.0
RGSC_v3.45166,251,438 - 166,251,577UniSTSRGSC3.4
Celera5157,883,855 - 157,883,994UniSTS
RH 3.4 Map51110.7UniSTS
Cytogenetic Map5q36UniSTS
AI008862  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25159,672,232 - 159,672,412 (+)MAPPERmRatBN7.2
Rnor_6.05166,055,612 - 166,055,791NCBIRnor6.0
Rnor_5.05169,703,370 - 169,703,549UniSTSRnor5.0
RGSC_v3.45166,311,363 - 166,311,542UniSTSRGSC3.4
Celera5157,943,029 - 157,943,208UniSTS
RH 3.4 Map51106.3UniSTS
Cytogenetic Map5q36UniSTS
AU048655  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25159,659,835 - 159,659,938 (+)MAPPERmRatBN7.2
Rnor_6.05166,043,215 - 166,043,317NCBIRnor6.0
Rnor_5.05169,691,694 - 169,691,796UniSTSRnor5.0
RGSC_v3.45166,298,379 - 166,298,481UniSTSRGSC3.4
Celera5157,930,635 - 157,930,737UniSTS
Cytogenetic Map5q36UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2302369Scl60Serum cholesterol level QTL 603.13blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)5143608201161165651Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5143069996166846814Rat
1298090Bp155Blood pressure QTL 1553.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)5151006154161165494Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5151113452166875058Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5132717196165560427Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1354631Swd2Spike wave discharge measurement QTL 23.640.0002brain electrophysiology trait (VT:0010557)brain total spike-and-wave discharge duration (CMO:0001740)5151113452164465185Rat
1549904Neuinf1Neuroinflammation QTL 130nervous system integrity trait (VT:0010566)blood T lymphocyte count (CMO:0000110)5154828214166875058Rat
2313096Bmd78Bone mineral density QTL 783.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)5144377876161317411Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 56 41 18 41 8 11 74 35 41 11 8
Low 1 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_057200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB070355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB120429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC123476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC135710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF083331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF155823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000077784   ⟹   ENSRNOP00000074305
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5159,561,271 - 159,613,778 (-)Ensembl
Rnor_6.0 Ensembl5165,938,576 - 165,999,203 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000078830   ⟹   ENSRNOP00000075214
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5159,611,682 - 159,742,778 (-)Ensembl
Rnor_6.0 Ensembl5165,991,037 - 166,133,274 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000079919   ⟹   ENSRNOP00000075228
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5159,611,682 - 159,742,778 (-)Ensembl
Rnor_6.0 Ensembl5165,995,287 - 166,116,516 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000080888   ⟹   ENSRNOP00000072431
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5159,611,682 - 159,742,778 (-)Ensembl
Rnor_6.0 Ensembl5165,995,287 - 166,116,516 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000086226
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5159,668,015 - 159,742,778 (-)Ensembl
Rnor_6.0 Ensembl5166,051,413 - 166,133,402 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000087739   ⟹   ENSRNOP00000074322
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5159,611,682 - 159,742,778 (-)Ensembl
Rnor_6.0 Ensembl5165,994,788 - 166,133,491 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000089099   ⟹   ENSRNOP00000075522
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5159,611,682 - 159,742,778 (-)Ensembl
Rnor_6.0 Ensembl5165,995,061 - 166,133,491 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000104782   ⟹   ENSRNOP00000082532
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5159,582,731 - 159,598,949 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000105558   ⟹   ENSRNOP00000094551
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5159,611,682 - 159,742,778 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000117986   ⟹   ENSRNOP00000088342
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5159,611,682 - 159,742,778 (-)Ensembl
RefSeq Acc Id: NM_057200   ⟹   NP_476548
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25159,611,682 - 159,742,778 (-)NCBI
Rnor_6.05165,995,061 - 166,133,491 (-)NCBI
Rnor_5.05169,643,325 - 169,780,881 (-)NCBI
RGSC_v3.45166,250,225 - 166,381,782 (-)RGD
Celera5157,882,642 - 158,013,175 (-)RGD
Sequence:
RefSeq Acc Id: XM_039109167   ⟹   XP_038965095
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25159,607,697 - 159,742,631 (-)NCBI
RefSeq Acc Id: XM_039109168   ⟹   XP_038965096
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25159,607,697 - 159,742,631 (-)NCBI
RefSeq Acc Id: XM_039109169   ⟹   XP_038965097
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25159,607,697 - 159,742,631 (-)NCBI
RefSeq Acc Id: XM_039109170   ⟹   XP_038965098
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25159,607,697 - 159,742,631 (-)NCBI
RefSeq Acc Id: XM_039109171   ⟹   XP_038965099
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25159,607,697 - 159,742,631 (-)NCBI
RefSeq Acc Id: XM_039109172   ⟹   XP_038965100
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25159,607,697 - 159,742,631 (-)NCBI
RefSeq Acc Id: XM_039109173   ⟹   XP_038965101
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25159,607,697 - 159,742,631 (-)NCBI
RefSeq Acc Id: XM_039109174   ⟹   XP_038965102
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25159,607,697 - 159,742,631 (-)NCBI
RefSeq Acc Id: XM_039109175   ⟹   XP_038965103
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25159,607,697 - 159,742,631 (-)NCBI
RefSeq Acc Id: XM_039109176   ⟹   XP_038965104
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25159,607,697 - 159,742,631 (-)NCBI
RefSeq Acc Id: XM_039109177   ⟹   XP_038965105
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25159,611,908 - 159,742,631 (-)NCBI
RefSeq Acc Id: XM_039109178   ⟹   XP_038965106
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25159,607,697 - 159,742,631 (-)NCBI
RefSeq Acc Id: XM_039109179   ⟹   XP_038965107
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25159,607,697 - 159,742,631 (-)NCBI
RefSeq Acc Id: XM_039109180   ⟹   XP_038965108
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25159,607,697 - 159,742,631 (-)NCBI
RefSeq Acc Id: XM_039109181   ⟹   XP_038965109
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25159,611,908 - 159,742,631 (-)NCBI
RefSeq Acc Id: XM_039109182   ⟹   XP_038965110
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25159,665,820 - 159,742,631 (-)NCBI
RefSeq Acc Id: XM_039109183   ⟹   XP_038965111
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25159,669,151 - 159,742,631 (-)NCBI
RefSeq Acc Id: XM_039109184   ⟹   XP_038965112
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25159,607,697 - 159,656,932 (-)NCBI
RefSeq Acc Id: XM_039109185   ⟹   XP_038965113
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25159,607,697 - 159,656,722 (-)NCBI
Protein Sequences
Protein RefSeqs NP_476548 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965095 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965096 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965097 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965098 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965099 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965100 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965101 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965102 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965103 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965104 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965105 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965106 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965107 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965108 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965109 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965110 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965111 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965112 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965113 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC33292 (Get FASTA)   NCBI Sequence Viewer  
  AAD39240 (Get FASTA)   NCBI Sequence Viewer  
  BAB86917 (Get FASTA)   NCBI Sequence Viewer  
  BAD51401 (Get FASTA)   NCBI Sequence Viewer  
  EDL81157 (Get FASTA)   NCBI Sequence Viewer  
  EDL81158 (Get FASTA)   NCBI Sequence Viewer  
  EDL81159 (Get FASTA)   NCBI Sequence Viewer  
  O88658 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_476548   ⟸   NM_057200
- UniProtKB: O88658 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000075522   ⟸   ENSRNOT00000089099
RefSeq Acc Id: ENSRNOP00000072431   ⟸   ENSRNOT00000080888
RefSeq Acc Id: ENSRNOP00000074322   ⟸   ENSRNOT00000087739
RefSeq Acc Id: ENSRNOP00000075228   ⟸   ENSRNOT00000079919
RefSeq Acc Id: ENSRNOP00000074305   ⟸   ENSRNOT00000077784
RefSeq Acc Id: ENSRNOP00000075214   ⟸   ENSRNOT00000078830
RefSeq Acc Id: XP_038965103   ⟸   XM_039109175
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038965098   ⟸   XM_039109170
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038965096   ⟸   XM_039109168
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038965108   ⟸   XM_039109180
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038965104   ⟸   XM_039109176
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038965102   ⟸   XM_039109174
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038965107   ⟸   XM_039109179
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038965099   ⟸   XM_039109171
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038965097   ⟸   XM_039109169
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038965101   ⟸   XM_039109173
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038965100   ⟸   XM_039109172
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038965106   ⟸   XM_039109178
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038965095   ⟸   XM_039109167
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038965112   ⟸   XM_039109184
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038965113   ⟸   XM_039109185
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038965109   ⟸   XM_039109181
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038965105   ⟸   XM_039109177
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038965110   ⟸   XM_039109182
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038965111   ⟸   XM_039109183
- Peptide Label: isoform X17
RefSeq Acc Id: ENSRNOP00000094551   ⟸   ENSRNOT00000105558
RefSeq Acc Id: ENSRNOP00000088342   ⟸   ENSRNOT00000117986
RefSeq Acc Id: ENSRNOP00000082532   ⟸   ENSRNOT00000104782
Protein Domains
FHA   Kinesin motor   PH

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694290
Promoter ID:EPDNEW_R4794
Type:initiation region
Name:Kif1b_1
Description:kinesin family member 1B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05166,133,470 - 166,133,530EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MWF/Hsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/OlalpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/RijCrl (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621520 AgrOrtholog
Ensembl Genes ENSRNOG00000057626 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000072431 UniProtKB/Swiss-Prot
  ENSRNOP00000074305 UniProtKB/TrEMBL
  ENSRNOP00000074322 UniProtKB/Swiss-Prot
  ENSRNOP00000075214 UniProtKB/TrEMBL
  ENSRNOP00000075228 UniProtKB/Swiss-Prot
  ENSRNOP00000075522 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000077784 UniProtKB/TrEMBL
  ENSRNOT00000078830 UniProtKB/TrEMBL
  ENSRNOT00000079919 UniProtKB/Swiss-Prot
  ENSRNOT00000080888 UniProtKB/Swiss-Prot
  ENSRNOT00000087739 UniProtKB/Swiss-Prot
  ENSRNOT00000089099 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.1040.10 UniProtKB/TrEMBL
  1.10.20.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.850.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro 6-PGluconate_DH_C-like UniProtKB/TrEMBL
  6PGDH_C UniProtKB/TrEMBL
  6PGDH_decarbox UniProtKB/TrEMBL
  6PGDH_NADP-bd UniProtKB/TrEMBL
  6PGdom_BS UniProtKB/TrEMBL
  CENP-S UniProtKB/TrEMBL
  DH_multihelical UniProtKB/TrEMBL
  FHA_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Histone-fold UniProtKB/TrEMBL
  Kinesin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinesin-like_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinesin-like_KIF1-typ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinesin_assoc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinesin_motor_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinesin_motor_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinesin_motor_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pgluconate_DH UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SMAD_FHA_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:117548 UniProtKB/Swiss-Prot
NCBI Gene 117548 ENTREZGENE
PANTHER PTHR11811 UniProtKB/TrEMBL
  PTHR24115 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 6PGD UniProtKB/TrEMBL
  CENP-S UniProtKB/TrEMBL
  DUF3694 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FHA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KIF1B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinesin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinesin_assoc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NAD_binding_2 UniProtKB/TrEMBL
  PF00169 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Kif1b PhenoGen
PRINTS 6PGDHDRGNASE UniProtKB/TrEMBL
  KINESINHEAVY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE 6PGD UniProtKB/TrEMBL
  FHA_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KINESIN_MOTOR_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KINESIN_MOTOR_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART 6PGD UniProtKB/TrEMBL
  FHA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KISc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00233 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP 6DGDH_C_like UniProtKB/TrEMBL
  Histone-fold UniProtKB/TrEMBL
  SSF49879 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF51735 UniProtKB/TrEMBL
  SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs gnd UniProtKB/TrEMBL
UniProt A0A0G2K7Q8_RAT UniProtKB/TrEMBL
  A0A0G2KA12_RAT UniProtKB/TrEMBL
  KIF1B_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q65Z71 UniProtKB/Swiss-Prot
  Q8R524 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Kif1b  kinesin family member 1B      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Kif1b  kinesin family member 1B      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in all myogenic cells at all stages 729092