Trak1 (trafficking kinesin protein 1) - Rat Genome Database

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Gene: Trak1 (trafficking kinesin protein 1) Rattus norvegicus
Analyze
Symbol: Trak1
Name: trafficking kinesin protein 1
RGD ID: 1307844
Description: Enables TPR domain binding activity. Involved in axonal transport of mitochondrion; dendrite morphogenesis; and positive regulation of axonogenesis. Located in axonal growth cone; dendrite; and perinuclear region of cytoplasm. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 68. Orthologous to human TRAK1 (trafficking kinesin protein 1); PARTICIPATES IN mitochondria transport pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; aconitine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC316085; LOC316085; OIP106; RGD1307844; similar to 106 kDa O-GlcNAc transferase-interacting protein; trafficking kinesin-binding protein 1; trafficking protein, kinesin binding 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88129,861,967 - 130,016,870 (+)NCBIGRCr8
mRatBN7.28120,984,445 - 121,139,357 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8120,984,431 - 121,139,367 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8126,645,443 - 126,737,251 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08124,844,508 - 124,936,314 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08122,674,305 - 122,766,030 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08129,946,596 - 130,106,382 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8130,009,573 - 130,106,382 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08129,143,133 - 129,298,643 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48126,372,084 - 126,478,493 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18126,391,732 - 126,498,230 (+)NCBI
Celera8120,183,796 - 120,274,421 (+)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
aconitine  (EXP)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP)
amphetamine  (EXP)
antirheumatic drug  (ISO)
Aroclor 1254  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
butan-1-ol  (ISO)
butanal  (ISO)
CGP 52608  (ISO)
choline  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
doxorubicin  (ISO)
endosulfan  (EXP)
ethanol  (ISO)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
geraniol  (ISO)
hydrogen cyanide  (ISO)
inulin  (ISO)
isoniazide  (ISO)
isoprenaline  (ISO)
L-methionine  (ISO)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine  (ISO)
N,N-diethyl-m-toluamide  (EXP)
nefazodone  (EXP)
nitrofen  (EXP)
Nutlin-3  (ISO)
ochratoxin A  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
permethrin  (EXP)
pirinixic acid  (ISO)
potassium cyanide  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
tamoxifen  (ISO)
tert-butyl hydroperoxide  (ISO)
thioacetamide  (EXP)
topotecan  (EXP)
troglitazone  (ISO)
trovafloxacin  (EXP)
tungsten  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Identification and cloning of a novel family of coiled-coil domain proteins that interact with O-GlcNAc transferase. Iyer SP, etal., J Biol Chem 2003 Feb 14;278(7):5399-409.
3. Regulation of mitochondrial transport in neurons. Lin MY and Sheng ZH, Exp Cell Res. 2015 May 15;334(1):35-44. doi: 10.1016/j.yexcr.2015.01.004. Epub 2015 Jan 19.
4. Localization of the kinesin adaptor proteins trafficking kinesin proteins 1 and 2 in primary cultures of hippocampal pyramidal and cortical neurons. Loss O and Stephenson FA, J Neurosci Res. 2015 Jul;93(7):1056-66. doi: 10.1002/jnr.23549. Epub 2015 Feb 4.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. TRAK/Milton motor-adaptor proteins steer mitochondrial trafficking to axons and dendrites. van Spronsen M, etal., Neuron. 2013 Feb 6;77(3):485-502. doi: 10.1016/j.neuron.2012.11.027.
Additional References at PubMed
PMID:15644324   PMID:16380713   PMID:18675823   PMID:19528298   PMID:33119838  


Genomics

Comparative Map Data
Trak1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88129,861,967 - 130,016,870 (+)NCBIGRCr8
mRatBN7.28120,984,445 - 121,139,357 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8120,984,431 - 121,139,367 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8126,645,443 - 126,737,251 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08124,844,508 - 124,936,314 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08122,674,305 - 122,766,030 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08129,946,596 - 130,106,382 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8130,009,573 - 130,106,382 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08129,143,133 - 129,298,643 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48126,372,084 - 126,478,493 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18126,391,732 - 126,498,230 (+)NCBI
Celera8120,183,796 - 120,274,421 (+)NCBICelera
Cytogenetic Map8q32NCBI
TRAK1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38342,013,093 - 42,225,890 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl342,013,802 - 42,225,890 (+)EnsemblGRCh38hg38GRCh38
GRCh37342,128,692 - 42,267,382 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36342,107,750 - 42,242,272 (+)NCBINCBI36Build 36hg18NCBI36
Celera342,072,033 - 42,206,607 (+)NCBICelera
Cytogenetic Map3p22.1NCBI
HuRef342,176,308 - 42,310,728 (+)NCBIHuRef
CHM1_1342,083,864 - 42,218,481 (+)NCBICHM1_1
T2T-CHM13v2.0342,031,601 - 42,243,885 (+)NCBIT2T-CHM13v2.0
Trak1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399121,126,568 - 121,303,985 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9121,126,568 - 121,303,984 (+)EnsemblGRCm39 Ensembl
GRCm389121,297,502 - 121,474,919 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9121,297,502 - 121,474,918 (+)EnsemblGRCm38mm10GRCm38
MGSCv379121,276,076 - 121,384,037 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369121,146,230 - 121,304,578 (+)NCBIMGSCv36mm8
Celera9121,841,671 - 121,945,742 (+)NCBICelera
Cytogenetic Map9F4NCBI
cM Map972.41NCBI
Trak1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542028,454,812 - 28,549,489 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542028,457,179 - 28,547,585 (-)NCBIChiLan1.0ChiLan1.0
TRAK1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2242,055,375 - 42,192,930 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1341,982,593 - 42,197,693 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0341,920,678 - 42,135,881 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1342,184,846 - 42,399,066 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl342,262,630 - 42,399,068 (+)Ensemblpanpan1.1panPan2
TRAK1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12311,221,008 - 11,383,242 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2311,266,216 - 11,381,177 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2311,302,201 - 11,419,115 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02311,508,856 - 11,670,902 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2311,508,840 - 11,671,019 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12311,311,019 - 11,472,693 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02311,453,450 - 11,615,335 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02311,456,851 - 11,619,205 (+)NCBIUU_Cfam_GSD_1.0
LOC110599009
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118197,429,584 - 197,521,638 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493647330,568,151 - 30,660,753 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRAK1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1325,774,250 - 25,935,828 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11325,773,345 - 25,934,770 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21328,540,574 - 28,592,253 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRAK1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1223,536,589 - 3,668,622 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl223,446,484 - 3,668,347 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041163,535,326 - 163,746,166 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trak1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473077,331,992 - 77,399,741 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473077,330,449 - 77,470,156 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Trak1
777 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:512
Count of miRNA genes:245
Interacting mature miRNAs:312
Transcripts:ENSRNOT00000026106
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8100149864120994388Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)895718998123900184Rat
2300182Bmd56Bone mineral density QTL 565.4femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)895718998123900184Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)876468691121468691Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)882460758122812818Rat

Markers in Region
RH134394  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28121,138,925 - 121,139,125 (+)MAPPERmRatBN7.2
Rnor_6.08130,105,951 - 130,106,150NCBIRnor6.0
Rnor_5.08129,298,212 - 129,298,411UniSTSRnor5.0
RGSC_v3.48126,478,062 - 126,478,261UniSTSRGSC3.4
Celera8120,273,990 - 120,274,189UniSTS
RH 3.4 Map81282.3UniSTS
Cytogenetic Map8q32UniSTS
AU047959  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28121,060,757 - 121,061,058 (+)MAPPERmRatBN7.2
Rnor_6.08130,022,975 - 130,023,275NCBIRnor6.0
Rnor_5.08129,219,077 - 129,219,377UniSTSRnor5.0
RGSC_v3.48126,385,485 - 126,385,785UniSTSRGSC3.4
Celera8120,197,198 - 120,197,498UniSTS
Cytogenetic Map8q32UniSTS
RH140752  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28121,128,626 - 121,128,808 (+)MAPPERmRatBN7.2
Rnor_6.08130,095,654 - 130,095,835NCBIRnor6.0
Rnor_5.08129,287,915 - 129,288,096UniSTSRnor5.0
RGSC_v3.48126,467,765 - 126,467,946UniSTSRGSC3.4
Celera8120,263,693 - 120,263,874UniSTS
RH 3.4 Map81282.1UniSTS
Cytogenetic Map8q32UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001134565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000026106   ⟹   ENSRNOP00000026106
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8121,047,355 - 121,139,367 (+)Ensembl
Rnor_6.0 Ensembl8130,009,573 - 130,106,382 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000101633   ⟹   ENSRNOP00000092949
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8120,984,431 - 121,139,357 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000109867   ⟹   ENSRNOP00000081421
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8121,047,054 - 121,139,357 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112022   ⟹   ENSRNOP00000078079
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8121,047,355 - 121,134,891 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000118223   ⟹   ENSRNOP00000088532
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8121,085,193 - 121,139,367 (+)Ensembl
RefSeq Acc Id: NM_001134565   ⟹   NP_001128037
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88129,924,808 - 130,016,870 (+)NCBI
mRatBN7.28121,047,286 - 121,139,357 (+)NCBI
Rnor_6.08130,009,573 - 130,106,382 (+)NCBI
Rnor_5.08129,143,133 - 129,298,643 (+)NCBI
RGSC_v3.48126,372,084 - 126,478,493 (+)RGD
Celera8120,183,796 - 120,274,421 (+)RGD
Sequence:
RefSeq Acc Id: XM_006244101   ⟹   XP_006244163
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88129,924,452 - 130,016,870 (+)NCBI
mRatBN7.28121,046,909 - 121,139,357 (+)NCBI
Rnor_6.08130,006,786 - 130,106,382 (+)NCBI
Rnor_5.08129,143,133 - 129,298,643 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006244102   ⟹   XP_006244164
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88129,956,289 - 130,016,870 (+)NCBI
mRatBN7.28121,078,766 - 121,139,357 (+)NCBI
Rnor_6.08130,040,948 - 130,106,382 (+)NCBI
Rnor_5.08129,143,133 - 129,298,643 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008766680   ⟹   XP_008764902
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88129,956,289 - 130,016,870 (+)NCBI
mRatBN7.28121,078,767 - 121,139,357 (+)NCBI
Rnor_6.08130,041,875 - 130,089,103 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039081645   ⟹   XP_038937573
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88129,924,443 - 130,016,870 (+)NCBI
mRatBN7.28121,046,227 - 121,139,357 (+)NCBI
RefSeq Acc Id: XM_039081646   ⟹   XP_038937574
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88129,962,095 - 130,016,870 (+)NCBI
mRatBN7.28121,084,634 - 121,139,357 (+)NCBI
RefSeq Acc Id: XM_039081648   ⟹   XP_038937576
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88129,956,287 - 130,016,870 (+)NCBI
mRatBN7.28121,078,764 - 121,139,357 (+)NCBI
RefSeq Acc Id: XM_039081650   ⟹   XP_038937578
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88129,924,448 - 130,016,870 (+)NCBI
mRatBN7.28121,046,904 - 121,139,357 (+)NCBI
RefSeq Acc Id: XM_039081651   ⟹   XP_038937579
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88129,861,967 - 130,016,870 (+)NCBI
mRatBN7.28120,984,445 - 121,139,357 (+)NCBI
RefSeq Acc Id: XM_039081652   ⟹   XP_038937580
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88129,862,693 - 130,016,870 (+)NCBI
mRatBN7.28120,985,160 - 121,139,357 (+)NCBI
RefSeq Acc Id: XM_039081653   ⟹   XP_038937581
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88129,906,333 - 130,016,870 (+)NCBI
mRatBN7.28121,028,795 - 121,139,357 (+)NCBI
RefSeq Acc Id: XM_039081654   ⟹   XP_038937582
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88129,936,298 - 130,016,870 (+)NCBI
mRatBN7.28121,058,708 - 121,139,357 (+)NCBI
RefSeq Acc Id: XM_039081655   ⟹   XP_038937583
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88129,938,876 - 130,016,870 (+)NCBI
mRatBN7.28121,061,335 - 121,139,357 (+)NCBI
RefSeq Acc Id: XM_039081656   ⟹   XP_038937584
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88129,924,459 - 130,014,269 (+)NCBI
mRatBN7.28121,046,921 - 121,136,764 (+)NCBI
RefSeq Acc Id: XM_039081658   ⟹   XP_038937586
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88129,924,550 - 130,014,268 (+)NCBI
mRatBN7.28121,046,929 - 121,136,757 (+)NCBI
RefSeq Acc Id: XM_039081659   ⟹   XP_038937587
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88129,924,568 - 130,014,267 (+)NCBI
mRatBN7.28121,046,932 - 121,136,757 (+)NCBI
RefSeq Acc Id: XM_063265659   ⟹   XP_063121729
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88129,948,815 - 130,016,870 (+)NCBI
RefSeq Acc Id: XM_063265660   ⟹   XP_063121730
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88129,962,099 - 130,016,870 (+)NCBI
RefSeq Acc Id: XM_063265661   ⟹   XP_063121731
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88129,962,098 - 130,016,870 (+)NCBI
RefSeq Acc Id: XR_010053987
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88129,924,630 - 130,014,158 (+)NCBI
RefSeq Acc Id: XR_010053988
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88129,924,636 - 130,014,158 (+)NCBI
RefSeq Acc Id: NP_001128037   ⟸   NM_001134565
- UniProtKB: A0A8I5ZSR6 (UniProtKB/TrEMBL),   A6I434 (UniProtKB/TrEMBL),   A0A8I6AI05 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006244163   ⟸   XM_006244101
- Peptide Label: isoform X6
- UniProtKB: A0A8I6AI05 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006244164   ⟸   XM_006244102
- Peptide Label: isoform X7
- UniProtKB: A6I435 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008764902   ⟸   XM_008766680
- Peptide Label: isoform X10
- UniProtKB: A6I435 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000026106   ⟸   ENSRNOT00000026106
RefSeq Acc Id: XP_038937579   ⟸   XM_039081651
- Peptide Label: isoform X8
- UniProtKB: A6I435 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937580   ⟸   XM_039081652
- Peptide Label: isoform X8
- UniProtKB: A6I435 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937581   ⟸   XM_039081653
- Peptide Label: isoform X8
- UniProtKB: A6I435 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937573   ⟸   XM_039081645
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AI05 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937578   ⟸   XM_039081650
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AI05 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937584   ⟸   XM_039081656
- Peptide Label: isoform X11
- UniProtKB: A0A8I5Y2D1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937586   ⟸   XM_039081658
- Peptide Label: isoform X12
- UniProtKB: A0A8I5Y2D1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937587   ⟸   XM_039081659
- Peptide Label: isoform X13
- UniProtKB: A0A8I5Y2D1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937582   ⟸   XM_039081654
- Peptide Label: isoform X8
- UniProtKB: A6I435 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937583   ⟸   XM_039081655
- Peptide Label: isoform X8
- UniProtKB: A6I435 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937576   ⟸   XM_039081648
- Peptide Label: isoform X4
- UniProtKB: A6I435 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937574   ⟸   XM_039081646
- Peptide Label: isoform X2
- UniProtKB: A6I435 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000092949   ⟸   ENSRNOT00000101633
Ensembl Acc Id: ENSRNOP00000081421   ⟸   ENSRNOT00000109867
Ensembl Acc Id: ENSRNOP00000088532   ⟸   ENSRNOT00000118223
Ensembl Acc Id: ENSRNOP00000078079   ⟸   ENSRNOT00000112022
RefSeq Acc Id: XP_063121729   ⟸   XM_063265659
- Peptide Label: isoform X3
- UniProtKB: A6I435 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121731   ⟸   XM_063265661
- Peptide Label: isoform X14
- UniProtKB: A6I435 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121730   ⟸   XM_063265660
- Peptide Label: isoform X9
- UniProtKB: A6I435 (UniProtKB/TrEMBL)
Protein Domains
HAP1 N-terminal   Trafficking kinesin-binding protein C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4ACC5-F1-model_v2 AlphaFold D4ACC5 1-939 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307844 AgrOrtholog
BioCyc Gene G2FUF-28704 BioCyc
Ensembl Genes ENSRNOG00000019262 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000026106.6 UniProtKB/TrEMBL
  ENSRNOT00000101633.1 UniProtKB/TrEMBL
  ENSRNOT00000109867.1 UniProtKB/TrEMBL
  ENSRNOT00000112022.1 UniProtKB/TrEMBL
  ENSRNOT00000118223.1 UniProtKB/TrEMBL
InterPro HAP1_N UniProtKB/TrEMBL
  Intracell_Traff-Reg UniProtKB/TrEMBL
  Traffickng_kinesin-bd_prot_dom UniProtKB/TrEMBL
KEGG Report rno:316085 UniProtKB/TrEMBL
NCBI Gene 316085 ENTREZGENE
PANTHER TRAFFICKING KINESIN-BINDING PROTEIN UniProtKB/TrEMBL
  TRAFFICKING KINESIN-BINDING PROTEIN 1 UniProtKB/TrEMBL
Pfam HAP1_N UniProtKB/TrEMBL
  Milton UniProtKB/TrEMBL
PhenoGen Trak1 PhenoGen
RatGTEx ENSRNOG00000019262 RatGTEx
SMART HAP1_N UniProtKB/TrEMBL
  Milton UniProtKB/TrEMBL
UniProt A0A8I5Y2D1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZSR6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A6Q8_RAT UniProtKB/TrEMBL
  A0A8I6AI05 ENTREZGENE, UniProtKB/TrEMBL
  A6I434 ENTREZGENE, UniProtKB/TrEMBL
  A6I435 ENTREZGENE, UniProtKB/TrEMBL
  D4ACC5_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-05-20 Trak1  trafficking kinesin protein 1  Trak1  trafficking protein, kinesin binding 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-04-23 Trak1  trafficking protein, kinesin binding 1  RGD1307844  similar to 106 kDa O-GlcNAc transferase-interacting protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1307844  similar to 106 kDa O-GlcNAc transferase-interacting protein   RGD1307844_predicted  similar to 106 kDa O-GlcNAc transferase-interacting protein (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1307844_predicted  similar to 106 kDa O-GlcNAc transferase-interacting protein (predicted)  LOC316085_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC316085_predicted  similar to 106 kDa O-GlcNAc transferase-interacting protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL