Trak1 (trafficking kinesin protein 1) - Rat Genome Database

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Gene: Trak1 (trafficking kinesin protein 1) Rattus norvegicus
Analyze
Symbol: Trak1
Name: trafficking kinesin protein 1
RGD ID: 1307844
Description: Enables TPR domain binding activity. Involved in axonal transport of mitochondrion; dendrite morphogenesis; and positive regulation of axonogenesis. Located in axonal growth cone; dendrite; and perinuclear region of cytoplasm. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 68. Orthologous to human TRAK1 (trafficking kinesin protein 1); PARTICIPATES IN mitochondria transport pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; aconitine; all-trans-retinoic acid.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC316085; LOC316085; OIP106; RGD1307844; similar to 106 kDa O-GlcNAc transferase-interacting protein; trafficking kinesin-binding protein 1; trafficking protein, kinesin binding 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28120,984,445 - 121,139,357 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl8120,984,431 - 121,139,367 (+)Ensembl
Rnor_6.08129,946,596 - 130,106,382 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8130,009,573 - 130,106,382 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08129,143,133 - 129,298,643 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48126,372,084 - 126,478,493 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18126,391,732 - 126,498,230 (+)NCBI
Celera8120,183,796 - 120,274,421 (+)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Identification and cloning of a novel family of coiled-coil domain proteins that interact with O-GlcNAc transferase. Iyer SP, etal., J Biol Chem 2003 Feb 14;278(7):5399-409.
3. Regulation of mitochondrial transport in neurons. Lin MY and Sheng ZH, Exp Cell Res. 2015 May 15;334(1):35-44. doi: 10.1016/j.yexcr.2015.01.004. Epub 2015 Jan 19.
4. Localization of the kinesin adaptor proteins trafficking kinesin proteins 1 and 2 in primary cultures of hippocampal pyramidal and cortical neurons. Loss O and Stephenson FA, J Neurosci Res. 2015 Jul;93(7):1056-66. doi: 10.1002/jnr.23549. Epub 2015 Feb 4.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. TRAK/Milton motor-adaptor proteins steer mitochondrial trafficking to axons and dendrites. van Spronsen M, etal., Neuron. 2013 Feb 6;77(3):485-502. doi: 10.1016/j.neuron.2012.11.027.
Additional References at PubMed
PMID:15644324   PMID:16380713   PMID:18675823   PMID:19528298   PMID:33119838  


Genomics

Comparative Map Data
Trak1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28120,984,445 - 121,139,357 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl8120,984,431 - 121,139,367 (+)Ensembl
Rnor_6.08129,946,596 - 130,106,382 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8130,009,573 - 130,106,382 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08129,143,133 - 129,298,643 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48126,372,084 - 126,478,493 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18126,391,732 - 126,498,230 (+)NCBI
Celera8120,183,796 - 120,274,421 (+)NCBICelera
Cytogenetic Map8q32NCBI
TRAK1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38342,013,093 - 42,225,890 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl342,013,802 - 42,225,890 (+)EnsemblGRCh38hg38GRCh38
GRCh37342,128,692 - 42,267,382 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36342,107,750 - 42,242,272 (+)NCBINCBI36hg18NCBI36
Celera342,072,033 - 42,206,607 (+)NCBI
Cytogenetic Map3p22.1NCBI
HuRef342,176,308 - 42,310,728 (+)NCBIHuRef
CHM1_1342,083,864 - 42,218,481 (+)NCBICHM1_1
T2T-CHM13v2.0342,105,156 - 42,243,885 (+)NCBI
Trak1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399121,126,568 - 121,303,985 (+)NCBIGRCm39mm39
GRCm39 Ensembl9121,126,568 - 121,303,984 (+)Ensembl
GRCm389121,297,502 - 121,474,919 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9121,297,502 - 121,474,918 (+)EnsemblGRCm38mm10GRCm38
MGSCv379121,276,076 - 121,384,037 (+)NCBIGRCm37mm9NCBIm37
MGSCv369121,146,230 - 121,304,578 (+)NCBImm8
Celera9121,841,671 - 121,945,742 (+)NCBICelera
Cytogenetic Map9F4NCBI
cM Map972.41NCBI
Trak1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542028,454,812 - 28,549,489 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542028,457,179 - 28,547,585 (-)NCBIChiLan1.0ChiLan1.0
TRAK1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1342,184,846 - 42,399,066 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl342,262,630 - 42,399,068 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0341,920,678 - 42,135,881 (+)NCBIMhudiblu_PPA_v0panPan3
TRAK1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12311,221,008 - 11,383,242 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2311,266,216 - 11,381,177 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2311,302,201 - 11,419,115 (+)NCBI
ROS_Cfam_1.02311,508,856 - 11,670,902 (+)NCBI
ROS_Cfam_1.0 Ensembl2311,508,840 - 11,671,019 (+)Ensembl
UMICH_Zoey_3.12311,311,019 - 11,472,693 (+)NCBI
UNSW_CanFamBas_1.02311,453,450 - 11,615,335 (+)NCBI
UU_Cfam_GSD_1.02311,456,851 - 11,619,205 (+)NCBI
LOC110599009
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118197,429,584 - 197,521,638 (+)NCBI
SpeTri2.0NW_00493647330,568,151 - 30,660,753 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRAK1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1325,773,981 - 25,935,828 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11325,773,345 - 25,934,770 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21328,540,574 - 28,592,253 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRAK1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1223,536,589 - 3,668,622 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl223,446,484 - 3,668,347 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041163,535,326 - 163,746,166 (-)NCBIVero_WHO_p1.0
Trak1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473077,331,992 - 77,399,741 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462473077,330,449 - 77,470,156 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
RH134394  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28121,138,925 - 121,139,125 (+)MAPPERmRatBN7.2
Rnor_6.08130,105,951 - 130,106,150NCBIRnor6.0
Rnor_5.08129,298,212 - 129,298,411UniSTSRnor5.0
RGSC_v3.48126,478,062 - 126,478,261UniSTSRGSC3.4
Celera8120,273,990 - 120,274,189UniSTS
RH 3.4 Map81282.3UniSTS
Cytogenetic Map8q32UniSTS
AU047959  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28121,060,757 - 121,061,058 (+)MAPPERmRatBN7.2
Rnor_6.08130,022,975 - 130,023,275NCBIRnor6.0
Rnor_5.08129,219,077 - 129,219,377UniSTSRnor5.0
RGSC_v3.48126,385,485 - 126,385,785UniSTSRGSC3.4
Celera8120,197,198 - 120,197,498UniSTS
Cytogenetic Map8q32UniSTS
RH140752  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28121,128,626 - 121,128,808 (+)MAPPERmRatBN7.2
Rnor_6.08130,095,654 - 130,095,835NCBIRnor6.0
Rnor_5.08129,287,915 - 129,288,096UniSTSRnor5.0
RGSC_v3.48126,467,765 - 126,467,946UniSTSRGSC3.4
Celera8120,263,693 - 120,263,874UniSTS
RH 3.4 Map81282.1UniSTS
Cytogenetic Map8q32UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)876468691121468691Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)882460758122812818Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)895718998123900184Rat
2300182Bmd56Bone mineral density QTL 565.4femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)895718998123900184Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8100149864120994388Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:512
Count of miRNA genes:245
Interacting mature miRNAs:312
Transcripts:ENSRNOT00000026106
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 17 13 8 13 8 11 74 35 36 11 8
Low 40 28 11 28 5
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001134565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000026106   ⟹   ENSRNOP00000026106
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8121,047,355 - 121,139,367 (+)Ensembl
Rnor_6.0 Ensembl8130,009,573 - 130,106,382 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000101633   ⟹   ENSRNOP00000092949
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8120,984,431 - 121,139,357 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000109867   ⟹   ENSRNOP00000081421
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8121,047,054 - 121,139,357 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112022   ⟹   ENSRNOP00000078079
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8121,047,355 - 121,134,891 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000118223   ⟹   ENSRNOP00000088532
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8121,085,193 - 121,139,367 (+)Ensembl
RefSeq Acc Id: NM_001134565   ⟹   NP_001128037
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28121,047,355 - 121,139,357 (+)NCBI
Rnor_6.08130,009,573 - 130,106,382 (+)NCBI
Rnor_5.08129,143,133 - 129,298,643 (+)NCBI
RGSC_v3.48126,372,084 - 126,478,493 (+)RGD
Celera8120,183,796 - 120,274,421 (+)RGD
Sequence:
RefSeq Acc Id: XM_006244099   ⟹   XP_006244161
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28121,084,643 - 121,128,944 (+)NCBI
Rnor_6.08130,046,891 - 130,106,382 (+)NCBI
Rnor_5.08129,143,133 - 129,298,643 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006244101   ⟹   XP_006244163
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28121,046,909 - 121,139,357 (+)NCBI
Rnor_6.08130,006,786 - 130,106,382 (+)NCBI
Rnor_5.08129,143,133 - 129,298,643 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006244102   ⟹   XP_006244164
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28121,078,766 - 121,139,357 (+)NCBI
Rnor_6.08130,040,948 - 130,106,382 (+)NCBI
Rnor_5.08129,143,133 - 129,298,643 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008766680   ⟹   XP_008764902
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28121,078,767 - 121,139,357 (+)NCBI
Rnor_6.08130,041,875 - 130,089,103 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039081645   ⟹   XP_038937573
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28121,046,227 - 121,139,357 (+)NCBI
RefSeq Acc Id: XM_039081646   ⟹   XP_038937574
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28121,084,634 - 121,139,357 (+)NCBI
RefSeq Acc Id: XM_039081647   ⟹   XP_038937575
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28121,046,902 - 121,139,357 (+)NCBI
RefSeq Acc Id: XM_039081648   ⟹   XP_038937576
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28121,078,764 - 121,139,357 (+)NCBI
RefSeq Acc Id: XM_039081650   ⟹   XP_038937578
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28121,046,904 - 121,139,357 (+)NCBI
RefSeq Acc Id: XM_039081651   ⟹   XP_038937579
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28120,984,445 - 121,139,357 (+)NCBI
RefSeq Acc Id: XM_039081652   ⟹   XP_038937580
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28120,985,160 - 121,139,357 (+)NCBI
RefSeq Acc Id: XM_039081653   ⟹   XP_038937581
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28121,028,795 - 121,139,357 (+)NCBI
RefSeq Acc Id: XM_039081654   ⟹   XP_038937582
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28121,058,708 - 121,139,357 (+)NCBI
RefSeq Acc Id: XM_039081655   ⟹   XP_038937583
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28121,061,335 - 121,139,357 (+)NCBI
RefSeq Acc Id: XM_039081656   ⟹   XP_038937584
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28121,046,921 - 121,136,764 (+)NCBI
RefSeq Acc Id: XM_039081658   ⟹   XP_038937586
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28121,046,929 - 121,136,757 (+)NCBI
RefSeq Acc Id: XM_039081659   ⟹   XP_038937587
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28121,046,932 - 121,136,757 (+)NCBI
RefSeq Acc Id: XM_039081660   ⟹   XP_038937588
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28121,046,938 - 121,133,447 (+)NCBI
RefSeq Acc Id: XM_039081661   ⟹   XP_038937589
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28121,047,105 - 121,133,447 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001128037   ⟸   NM_001134565
- UniProtKB: D4ACC5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006244163   ⟸   XM_006244101
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006244164   ⟸   XM_006244102
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006244161   ⟸   XM_006244099
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: XP_008764902   ⟸   XM_008766680
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: ENSRNOP00000026106   ⟸   ENSRNOT00000026106
RefSeq Acc Id: XP_038937579   ⟸   XM_039081651
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038937580   ⟸   XM_039081652
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038937581   ⟸   XM_039081653
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038937573   ⟸   XM_039081645
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038937575   ⟸   XM_039081647
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038937578   ⟸   XM_039081650
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038937584   ⟸   XM_039081656
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038937586   ⟸   XM_039081658
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038937587   ⟸   XM_039081659
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038937588   ⟸   XM_039081660
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038937589   ⟸   XM_039081661
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038937582   ⟸   XM_039081654
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038937583   ⟸   XM_039081655
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038937576   ⟸   XM_039081648
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038937574   ⟸   XM_039081646
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000092949   ⟸   ENSRNOT00000101633
RefSeq Acc Id: ENSRNOP00000081421   ⟸   ENSRNOT00000109867
RefSeq Acc Id: ENSRNOP00000088532   ⟸   ENSRNOT00000118223
RefSeq Acc Id: ENSRNOP00000078079   ⟸   ENSRNOT00000112022

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4ACC5-F1-model_v2 AlphaFold D4ACC5 1-939 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
8 130103929 130103930 C T snv BUF/N (2020), Buf/N (MCW)
8 130104378 130104379 G A snv CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), Buf/N (MCW), F344/NRrrc (MCW), M520/N (MCW), MR/N (MCW), WN/N (MCW), ACI/EurMcwi (RGD), F344/NCrl (RGD), FHH/EurMcwi (RGD), LE/Stm (RGD), LEW/Crl (RGD), LL/MavRrrc (RGD), SBH/Ygl (RGD), SBN/Ygl (RGD), SR/JrHsd (RGD), SS/JrHsdMcwi (RGD), ACI/EurMcwi (2019), BUF/N (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), LEW/Crl (2019), LE/Stm (2019), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WN/N (2020), M520/NRrrcMcwi (2019), GH/OmrMcwi (MCW), ACI/N (MCW), FHL/EurMcwi (RGD), LEW/NCrlBR (RGD), MHS/Gib (RGD), MNS/Gib (RGD), SS/Jr (RGD), WAG/Rij (RGD), ACI/N (2020), F344/N (2020), FXLE18/Stm (2020), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020)


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
8 129296190 129296191 C T snv BUF/N (KNAW)
8 129296639 129296640 G A snv FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), WN/N (KNAW), LH/MavRrrc (KNAW), LL/MavRrrc (KNAW), LN/MavRrrc (KNAW), MHS/Gib (KNAW), MR/N (KNAW), SR/JrHsd (KNAW), SS/Jr (KNAW), SS/JrHsdMcwi (KNAW), WAG/Rij (KNAW), ACI/N (KNAW), ACI/EurMcwi (KNAW), BBDP/WorN (KNAW), BUF/N (KNAW), DA/BklArbNsi (KNAW), F344/NRrrc (SOLiD) (KNAW), F344/NCrl (KNAW), F344/NHsd (KNAW), FHH/EurMcwi (KNAW), FHL/EurMcwi (KNAW), LE/Stm (Illumina) (KNAW), LE/Stm (SOLiD) (KNAW), LEW/Crl (KNAW), LEW/NCrl (KNAW), M520/N (KNAW), MNS/Gib (KNAW), SBH/Ygl (KNAW), SBN/Ygl (KNAW), F344/NRrrc (Illumina) (KNAW), SDLEF7/Barth (UDEL), LE/OrlBarth (UDEL), Crl:SD (UDEL), IS/Kyo (KyushuU), BUF/MNa (KyushuU), NIG-III/Hok (KyushuU), F344/DuCrlCrlj (KyushuU), LE/Stm (KyushuU), HTX/Kyo (KyushuU), F344/NSlc (KyushuU), RCS/Kyo (KyushuU), IS-Tlk/Kyo (KyushuU), F344/Stm (KyushuU), HWY/Slc (KyushuU), LEC/Tj (KyushuU), F344/Jcl (KyushuU), BDIX/NemOda (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), KFRS3B/Kyo (KyushuU), ZF (KyushuU), ZFDM (KyushuU), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW)


Assembly: RGSC_v3.4

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
8 126476040 126476041 C T snv BUF/N (KNAW), HCR/2Mco (UMich), HCR/1Mco (UMich)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307844 AgrOrtholog
BioCyc Gene G2FUF-28704 BioCyc
Ensembl Genes ENSRNOG00000019262 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000026106 ENTREZGENE
  ENSRNOP00000026106.6 UniProtKB/TrEMBL
  ENSRNOP00000078079 ENTREZGENE
  ENSRNOP00000078079.1 UniProtKB/TrEMBL
  ENSRNOP00000081421 ENTREZGENE
  ENSRNOP00000081421.1 UniProtKB/TrEMBL
  ENSRNOP00000088532 ENTREZGENE
  ENSRNOP00000088532.1 UniProtKB/TrEMBL
  ENSRNOP00000092949 ENTREZGENE
  ENSRNOP00000092949.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000026106 ENTREZGENE
  ENSRNOT00000026106.6 UniProtKB/TrEMBL
  ENSRNOT00000101633 ENTREZGENE
  ENSRNOT00000101633.1 UniProtKB/TrEMBL
  ENSRNOT00000109867 ENTREZGENE
  ENSRNOT00000109867.1 UniProtKB/TrEMBL
  ENSRNOT00000112022 ENTREZGENE
  ENSRNOT00000112022.1 UniProtKB/TrEMBL
  ENSRNOT00000118223 ENTREZGENE
  ENSRNOT00000118223.1 UniProtKB/TrEMBL
InterPro HAP1_N UniProtKB/TrEMBL
  Traffickng_kinesin-bd_prot_dom UniProtKB/TrEMBL
KEGG Report rno:316085 UniProtKB/TrEMBL
NCBI Gene 316085 ENTREZGENE
Pfam HAP1_N UniProtKB/TrEMBL
  Milton UniProtKB/TrEMBL
PhenoGen Trak1 PhenoGen
UniProt A0A8I5Y2D1_RAT UniProtKB/TrEMBL
  A0A8I5ZSR6_RAT UniProtKB/TrEMBL
  A0A8I6A6Q8_RAT UniProtKB/TrEMBL
  A0A8I6AI05_RAT UniProtKB/TrEMBL
  D4ACC5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-05-20 Trak1  trafficking kinesin protein 1  Trak1  trafficking protein, kinesin binding 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-04-23 Trak1  trafficking protein, kinesin binding 1  RGD1307844  similar to 106 kDa O-GlcNAc transferase-interacting protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1307844  similar to 106 kDa O-GlcNAc transferase-interacting protein   RGD1307844_predicted  similar to 106 kDa O-GlcNAc transferase-interacting protein (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1307844_predicted  similar to 106 kDa O-GlcNAc transferase-interacting protein (predicted)  LOC316085_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC316085_predicted  similar to 106 kDa O-GlcNAc transferase-interacting protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL