Dctn6 (dynactin subunit 6) - Rat Genome Database

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Gene: Dctn6 (dynactin subunit 6) Rattus norvegicus
Analyze
Symbol: Dctn6
Name: dynactin subunit 6
RGD ID: 1307549
Description: Predicted to enable dynein complex binding activity. Predicted to be involved in mitotic spindle organization. Predicted to be located in centrosome. Predicted to be part of dynactin complex. Orthologous to human DCTN6 (dynactin subunit 6); PARTICIPATES IN mitochondria transport pathway; vasopressin signaling pathway via receptor type 2; INTERACTS WITH 2,6-dinitrotoluene; bisphenol A; cadmium dichloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: dynactin 6; LOC290798
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21658,077,595 - 58,096,604 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1658,077,585 - 58,096,968 (+)Ensembl
Rnor_6.01661,795,544 - 61,814,734 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1661,795,432 - 61,814,733 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01661,461,253 - 61,480,355 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41661,805,057 - 61,824,399 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11661,805,185 - 61,824,467 (+)NCBI
Celera1656,115,632 - 56,134,228 (+)NCBICelera
Cytogenetic Map16q12.2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Comprehensive gene review and curation RGD comprehensive gene curation
5. Dynactin. Schroer TA, Annu Rev Cell Dev Biol. 2004;20:759-79.
Additional References at PubMed
PMID:10525537   PMID:21399614   PMID:23455152  


Genomics

Comparative Map Data
Dctn6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21658,077,595 - 58,096,604 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1658,077,585 - 58,096,968 (+)Ensembl
Rnor_6.01661,795,544 - 61,814,734 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1661,795,432 - 61,814,733 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01661,461,253 - 61,480,355 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41661,805,057 - 61,824,399 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11661,805,185 - 61,824,467 (+)NCBI
Celera1656,115,632 - 56,134,228 (+)NCBICelera
Cytogenetic Map16q12.2NCBI
DCTN6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38830,156,369 - 30,183,639 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl830,156,319 - 30,183,639 (+)EnsemblGRCh38hg38GRCh38
GRCh37830,013,885 - 30,041,155 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36830,133,355 - 30,160,602 (+)NCBINCBI36hg18NCBI36
Build 34830,133,354 - 30,160,601NCBI
Celera828,973,101 - 29,000,347 (+)NCBI
Cytogenetic Map8p12NCBI
HuRef828,558,549 - 28,585,889 (+)NCBIHuRef
CHM1_1830,216,121 - 30,243,455 (+)NCBICHM1_1
T2T-CHM13v2.0830,435,240 - 30,462,514 (+)NCBI
Dctn6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39834,557,574 - 34,575,866 (-)NCBIGRCm39mm39
GRCm39 Ensembl834,557,574 - 34,575,950 (-)Ensembl
GRCm38834,090,420 - 34,108,712 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl834,090,420 - 34,108,796 (-)EnsemblGRCm38mm10GRCm38
MGSCv37835,153,477 - 35,171,565 (-)NCBIGRCm37mm9NCBIm37
MGSCv36835,558,941 - 35,576,960 (-)NCBImm8
Celera836,706,339 - 36,726,929 (-)NCBICelera
Cytogenetic Map8A4NCBI
Dctn6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554636,631,654 - 6,645,962 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554636,612,124 - 6,645,962 (+)NCBIChiLan1.0ChiLan1.0
DCTN6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1826,647,765 - 26,672,466 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl826,647,944 - 26,673,455 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0829,457,426 - 29,485,142 (+)NCBIMhudiblu_PPA_v0panPan3
DCTN6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11634,119,908 - 34,144,689 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1634,120,046 - 34,144,632 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1634,582,465 - 34,607,208 (-)NCBI
ROS_Cfam_1.01636,149,841 - 36,174,598 (-)NCBI
ROS_Cfam_1.0 Ensembl1636,149,988 - 36,175,955 (-)Ensembl
UMICH_Zoey_3.11634,248,295 - 34,273,066 (-)NCBI
UNSW_CanFamBas_1.01634,817,304 - 34,841,846 (-)NCBI
UU_Cfam_GSD_1.01634,938,291 - 34,962,353 (-)NCBI
Dctn6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494357,274,146 - 57,293,925 (-)NCBI
SpeTri2.0NW_00493679269,893 - 89,645 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DCTN6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1554,875,850 - 54,896,148 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11554,876,213 - 54,895,883 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
DCTN6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1828,258,470 - 28,286,654 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl828,258,480 - 28,325,782 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605213,822,568 - 13,849,605 (-)NCBIVero_WHO_p1.0
Dctn6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248396,782,341 - 6,818,653 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248396,782,284 - 6,818,584 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
RH144211  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21658,084,708 - 58,084,808 (+)MAPPERmRatBN7.2
Rnor_6.01661,802,657 - 61,802,756NCBIRnor6.0
Rnor_5.01661,468,366 - 61,468,465UniSTSRnor5.0
RGSC_v3.41661,812,170 - 61,812,269UniSTSRGSC3.4
Celera1656,122,745 - 56,122,844UniSTS
RH 3.4 Map16541.4UniSTS
Cytogenetic Map16q12.3UniSTS
BF403099  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21658,084,575 - 58,084,756 (+)MAPPERmRatBN7.2
Rnor_6.01661,802,524 - 61,802,704NCBIRnor6.0
Rnor_5.01661,468,233 - 61,468,413UniSTSRnor5.0
RGSC_v3.41661,812,037 - 61,812,217UniSTSRGSC3.4
Celera1656,122,612 - 56,122,792UniSTS
RH 3.4 Map16541.9UniSTS
Cytogenetic Map16q12.3UniSTS
RH140990  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21658,096,412 - 58,096,603 (+)MAPPERmRatBN7.2
Rnor_6.01661,814,543 - 61,814,733NCBIRnor6.0
Rnor_5.01661,480,164 - 61,480,354UniSTSRnor5.0
RGSC_v3.41661,824,208 - 61,824,398UniSTSRGSC3.4
Celera1656,134,037 - 56,134,227UniSTS
RH 3.4 Map16542.31UniSTS
Cytogenetic Map16q12.3UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162173597566735975Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)162432551369325513Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)162515279370152793Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)163195152060148445Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)163528887080288870Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)163775215682752156Rat
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)163775215682752156Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164239634584729064Rat
8694429Bw164Body weight QTL 16450.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)165272646484729064Rat
8694364Abfw7Abdominal fat weight QTL 712.220.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)165272646484729064Rat
7411648Foco22Food consumption QTL 22150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)165272646484729064Rat
631525Pia14Pristane induced arthritis QTL 144.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)165571108783402471Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:37
Count of miRNA genes:35
Interacting mature miRNAs:37
Transcripts:ENSRNOT00000017756
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 50 34 19 34 8 11 74 35 41 11 8
Low 7 7 7
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000017756   ⟹   ENSRNOP00000017756
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1658,077,585 - 58,096,968 (+)Ensembl
Rnor_6.0 Ensembl1661,795,432 - 61,814,733 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000107106   ⟹   ENSRNOP00000076456
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1658,077,884 - 58,096,968 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000111946   ⟹   ENSRNOP00000086656
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1658,082,328 - 58,096,968 (+)Ensembl
RefSeq Acc Id: NM_001106085   ⟹   NP_001099555
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21658,077,595 - 58,096,604 (+)NCBI
Rnor_6.01661,795,544 - 61,814,734 (+)NCBI
Rnor_5.01661,461,253 - 61,480,355 (+)NCBI
RGSC_v3.41661,805,057 - 61,824,399 (+)RGD
Celera1656,115,632 - 56,134,228 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001099555 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM09168 (Get FASTA)   NCBI Sequence Viewer  
  EDM09169 (Get FASTA)   NCBI Sequence Viewer  
  EDM09170 (Get FASTA)   NCBI Sequence Viewer  
  EDM09171 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001099555   ⟸   NM_001106085
- UniProtKB: D4ADD8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000017756   ⟸   ENSRNOT00000017756
RefSeq Acc Id: ENSRNOP00000086656   ⟸   ENSRNOT00000111946
RefSeq Acc Id: ENSRNOP00000076456   ⟸   ENSRNOT00000107106

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4ADD8-F1-model_v2 AlphaFold D4ADD8 1-190 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700138
Promoter ID:EPDNEW_R10662
Type:initiation region
Name:Dctn6_1
Description:dynactin subunit 6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01661,795,523 - 61,795,583EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307549 AgrOrtholog
BioCyc Gene G2FUF-11138 BioCyc
Ensembl Genes ENSRNOG00000013254 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000017756 ENTREZGENE
  ENSRNOP00000017756.5 UniProtKB/TrEMBL
  ENSRNOP00000076456.1 UniProtKB/TrEMBL
  ENSRNOP00000086656.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000017756 ENTREZGENE
  ENSRNOT00000017756.8 UniProtKB/TrEMBL
  ENSRNOT00000107106.1 UniProtKB/TrEMBL
  ENSRNOT00000111946.1 UniProtKB/TrEMBL
InterPro DCTN6 UniProtKB/TrEMBL
  Hexapep_transf UniProtKB/TrEMBL
  Trimer_LpxA-like UniProtKB/TrEMBL
KEGG Report rno:290798 UniProtKB/TrEMBL
NCBI Gene 290798 ENTREZGENE
PANTHER PTHR13072 UniProtKB/TrEMBL
Pfam Hexapep UniProtKB/TrEMBL
PhenoGen Dctn6 PhenoGen
Superfamily-SCOP Trimer_LpxA_like UniProtKB/TrEMBL
UniProt A0A8I5Y4I3_RAT UniProtKB/TrEMBL
  A0A8I6A6N2_RAT UniProtKB/TrEMBL
  D4ADD8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-02 Dctn6  dynactin subunit 6  Dctn6  dynactin 6  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Dctn6  dynactin 6   Dctn6_predicted  dynactin 6 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Dctn6_predicted  dynactin 6 (predicted)      Symbol and Name status set to approved 70820 APPROVED