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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:mitochondria dynamics pathway
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Accession:PW:0001961 term browser browse the term
Definition:The interplay of mitochondria fission and fusion and mitochondria trafficking to properly respond to cellular needs. Mitochondria tend to form reticular networks, regulated through the coordination of fission, fusion and redistribution.

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mitochondria dynamics pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pink1 PTEN induced kinase 1 IMP RGD PMID:21613270 RGD:12903967 NCBI chr 5:150,530,523...150,542,635
Ensembl chr 5:150,530,523...150,542,635
JBrowse link
mitochondria fission pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnm1l dynamin 1-like ISO RGD PMID:21683788 PMID:24442478 RGD:10402101, RGD:10402102 NCBI chr11:84,581,216...84,632,382
Ensembl chr11:84,581,216...84,631,482
JBrowse link
G Fis1 fission, mitochondrial 1 ISO RGD PMID:21683788 PMID:24442478 RGD:10402101, RGD:10402102 NCBI chr12:19,708,560...19,723,392
Ensembl chr12:19,708,558...19,723,377
JBrowse link
G Gdap1 ganglioside-induced differentiation-associated-protein 1 ISO RGD PMID:21683788 PMID:24442478 RGD:10402101, RGD:10402102 NCBI chr 5:1,932,613...1,951,691
Ensembl chr 5:1,932,613...2,030,061
JBrowse link
G Mff mitochondrial fission factor ISO RGD PMID:21683788 PMID:24442478 RGD:10402101, RGD:10402102 NCBI chr 9:84,007,798...84,036,039
Ensembl chr 9:84,007,798...84,036,039
JBrowse link
G Mief1 mitochondrial elongation factor 1 ISO RGD PMID:21683788 PMID:24442478 RGD:10402101, RGD:10402102 NCBI chr 7:111,786,630...111,802,220
Ensembl chr 7:111,786,709...111,802,220
JBrowse link
G Mief2 mitochondrial elongation factor 2 ISO RGD PMID:21683788 PMID:24442478 RGD:10402101, RGD:10402102 NCBI chr10:45,408,055...45,414,144
Ensembl chr10:45,408,082...45,414,144
JBrowse link
G Mtfp1 mitochondrial fission process 1 ISO RGD PMID:21683788 PMID:24442478 RGD:10402101, RGD:10402102 NCBI chr14:78,968,434...78,972,274
Ensembl chr14:78,968,442...78,972,274
JBrowse link
G Sh3glb1 SH3 domain -containing GRB2-like endophilin B1 ISO RGD PMID:21683788 PMID:24442478 RGD:10402101, RGD:10402102 NCBI chr 2:233,750,838...233,784,817
Ensembl chr 2:233,750,838...233,784,784
JBrowse link
mitochondria fusion pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mfn1 mitofusin 1 ISO RGD PMID:21683788 PMID:24442478 RGD:10402101, RGD:10402102 NCBI chr 2:115,313,380...115,359,651
Ensembl chr 2:115,313,401...115,359,640
JBrowse link
G Mfn2 mitofusin 2 ISO RGD PMID:21683788 PMID:24442478 RGD:10402101, RGD:10402102 NCBI chr 5:158,304,285...158,335,502
Ensembl chr 5:158,304,287...158,335,342
JBrowse link
G Opa1 OPA1, mitochondrial dynamin like GTPase ISO
IMP
RGD PMID:21683788 PMID:21613270 PMID:24442478 RGD:10402101, RGD:12903967, RGD:10402102 NCBI chr11:71,108,100...71,185,170
Ensembl chr11:71,109,873...71,185,109
JBrowse link
G Phb2 prohibitin 2 ISO RGD PMID:21683788 RGD:10402101 NCBI chr 4:157,517,662...157,522,268
Ensembl chr 4:157,517,577...157,522,272
JBrowse link
G Pld6 phospholipase D family, member 6 ISO RGD PMID:21683788 RGD:10402101 NCBI chr10:44,578,536...44,581,187
Ensembl chr10:44,577,675...44,581,077
JBrowse link
G Stoml2 stomatin like 2 ISO RGD PMID:21683788 RGD:10402101 NCBI chr 5:57,256,227...57,259,824
Ensembl chr 5:57,256,220...57,259,920
JBrowse link
mitochondria transport pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actb actin, beta ISO RGD PMID:15473859 RGD:10402155 NCBI chr12:11,663,112...11,666,697
Ensembl chr12:11,663,109...11,672,877
JBrowse link
G Actr10 actin related protein 10 ISO RGD PMID:15473859 RGD:10402155 NCBI chr 6:89,446,141...89,472,350
Ensembl chr 6:89,446,093...89,473,047
JBrowse link
G Actr1a actin related protein 1A ISO RGD PMID:15473859 RGD:10402155 NCBI chr 1:245,237,821...245,256,618
Ensembl chr 1:245,237,826...245,256,495
JBrowse link
G Capza1 capping actin protein of muscle Z-line subunit alpha 1 ISO RGD PMID:15473859 RGD:10402155 NCBI chr 2:192,319,696...192,364,755
Ensembl chr 2:192,319,702...192,364,480
JBrowse link
G Dctn1 dynactin subunit 1 ISO RGD PMID:25612908 PMID:15473859 RGD:10402141, RGD:10402155 NCBI chr 4:115,671,024...115,703,824
Ensembl chr 4:115,661,638...115,703,815
JBrowse link
G Dctn2 dynactin subunit 2 ISO RGD PMID:15473859 RGD:10402155 NCBI chr 7:63,092,061...63,107,560
Ensembl chr 7:63,092,057...63,108,543
JBrowse link
G Dctn3 dynactin subunit 3 ISO RGD PMID:15473859 RGD:10402155 NCBI chr 5:56,881,085...56,889,041
Ensembl chr 5:56,881,085...56,889,102
JBrowse link
G Dctn4 dynactin subunit 4 ISO RGD PMID:15473859 RGD:10402155 NCBI chr18:53,982,355...54,009,409
Ensembl chr18:53,982,358...54,009,399
JBrowse link
G Dctn5 dynactin subunit 5 ISO RGD PMID:15473859 RGD:10402155 NCBI chr 1:176,689,176...176,705,907
Ensembl chr 1:176,689,156...176,705,906
JBrowse link
G Dctn6 dynactin subunit 6 ISO RGD PMID:15473859 RGD:10402155 NCBI chr16:58,077,595...58,096,604
Ensembl chr16:58,077,585...58,096,968
JBrowse link
G Dync1h1 dynein cytoplasmic 1 heavy chain 1 ISO RGD PMID:25612908 PMID:21936784 RGD:10402141, RGD:10402142 NCBI chr 6:129,615,208...129,680,888
Ensembl chr 6:129,609,397...129,680,883
JBrowse link
G Dync1i1 dynein cytoplasmic 1 intermediate chain 1 ISO RGD PMID:21936784 RGD:10402142 NCBI chr 4:33,852,597...34,166,159
Ensembl chr 4:33,852,927...34,166,149
JBrowse link
G Dync1i2 dynein cytoplasmic 1 intermediate chain 2 ISO RGD PMID:21936784 RGD:10402142 NCBI chr 3:56,033,882...56,085,080
Ensembl chr 3:56,033,917...56,085,080
JBrowse link
G Dync1li1 dynein cytoplasmic 1 light intermediate chain 1 ISO RGD PMID:21936784 RGD:10402142 NCBI chr 8:114,376,649...114,410,297
Ensembl chr 8:114,376,662...114,410,934
JBrowse link
G Dync1li2 dynein, cytoplasmic 1 light intermediate chain 2 ISO RGD PMID:21936784 RGD:10402142 NCBI chr19:531,783...554,670
Ensembl chr19:531,812...554,670
JBrowse link
G Dynll1 dynein light chain LC8-type 1 ISO RGD PMID:21936784 RGD:10402142 NCBI chr12:41,312,365...41,316,157
Ensembl chr12:41,312,367...41,314,741
JBrowse link
G Dynll2 dynein light chain LC8-type 2 ISO RGD PMID:21936784 RGD:10402142 NCBI chr10:72,767,035...72,785,824
Ensembl chr10:72,767,035...72,785,805
JBrowse link
G Dynlrb1 dynein light chain roadblock-type 1 ISO RGD PMID:21936784 RGD:10402142 NCBI chr 3:143,742,427...143,764,227
Ensembl chr 3:143,742,586...143,764,227
JBrowse link
G Dynlrb2 dynein light chain roadblock-type 2 ISO RGD PMID:21936784 RGD:10402142 NCBI chr19:44,520,134...44,531,384
Ensembl chr19:44,520,134...44,531,387
JBrowse link
G Dynlt1 dynein light chain Tctex-type 1 ISO RGD PMID:21936784 RGD:10402142 NCBI chr 1:46,887,017...46,893,956
Ensembl chr 1:46,887,017...46,893,881
JBrowse link
G Dynlt3 dynein light chain Tctex-type 3 ISO RGD PMID:21936784 RGD:10402142 NCBI chr  X:13,327,933...13,337,139
Ensembl chr  X:13,327,892...13,337,139
JBrowse link
G Fez1 fasciculation and elongation protein zeta 1 ISO RGD PMID:25612908 RGD:10402141 NCBI chr 8:36,544,462...36,589,684
Ensembl chr 8:36,544,535...36,589,683
JBrowse link
G Kif1b kinesin family member 1B ISO RGD PMID:25612908 RGD:10402141 NCBI chr 5:159,607,697...159,742,778
Ensembl chr 5:159,561,271...159,742,778
JBrowse link
G Kif5a kinesin family member 5A ISO RGD PMID:25612908 RGD:10402141 NCBI chr 7:63,051,894...63,089,024
Ensembl chr 7:63,049,424...63,092,858
JBrowse link
G Kif5b kinesin family member 5B ISO RGD PMID:25612908 RGD:10402141 NCBI chr17:51,489,904...51,527,508
Ensembl chr17:51,489,944...51,527,508
JBrowse link
G Kif5c kinesin family member 5C ISO RGD PMID:25612908 RGD:10402141 NCBI chr 3:34,032,082...34,185,597
Ensembl chr 3:34,032,105...34,182,413
JBrowse link
G Ranbp2 RAN binding protein 2 ISO RGD PMID:25612908 RGD:10402141 NCBI chr20:26,442,156...26,493,481
Ensembl chr20:26,442,217...26,493,481
JBrowse link
G Rhot1 ras homolog family member T1 ISO RGD PMID:25612908 RGD:10402141 NCBI chr10:65,198,700...65,262,807
Ensembl chr10:65,170,560...65,262,804
JBrowse link
G Rhot2 ras homolog family member T2 ISO RGD PMID:25612908 RGD:10402141 NCBI chr10:14,858,954...14,864,751
Ensembl chr10:14,858,956...14,864,751
JBrowse link
G Snph syntaphilin ISO RGD PMID:25612908 RGD:10402141 NCBI chr 3:140,098,540...140,139,342
Ensembl chr 3:140,099,708...140,139,453
JBrowse link
G Sybu syntabulin ISO RGD PMID:25612908 RGD:10402141 NCBI chr 7:75,847,000...75,948,919
Ensembl chr 7:75,847,003...75,948,828
JBrowse link
G Trak1 trafficking kinesin protein 1 ISO RGD PMID:25612908 RGD:10402141 NCBI chr 8:120,984,445...121,139,357
Ensembl chr 8:120,984,431...121,139,367
JBrowse link
G Trak2 trafficking kinesin protein 2 ISO RGD PMID:25612908 RGD:10402141 NCBI chr 9:60,348,531...60,414,036
Ensembl chr 9:60,350,012...60,413,996
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 6092
    regulatory pathway 3871
      homeostasis pathway 1773
        mitochondria homeostasis pathway 112
          mitochondria dynamics pathway 48
            altered mitochondria dynamics pathway + 0
            mitochondria fission pathway + 8
            mitochondria fusion pathway + 6
            mitochondria transport pathway + 33
paths to the root