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ONTOLOGY REPORT - ANNOTATIONS

Term:odontogenesis of dentin-containing tooth
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Accession:GO:0042475 term browser browse the term
Definition:The process whose specific outcome is the progression of a dentin-containing tooth over time, from its formation to the mature structure. A dentin-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and is composed mainly of dentin, a dense calcified substance, covered by a layer of enamel.
Comment:Note that placoid scales found in the cartilaginous fishes presumably develop through the same processes, but are found on the dermis, rather than in the mouth or pharynx. See Wikipedia:Placoid_scale#Placoid_scales.
Synonyms:exact_synonym: odontogenesis of dentine-containing teeth;   odontogenesis of dentine-containing tooth
 broad_synonym: odontogeny;   odontosis;   tooth development
 only_in_taxon: NCBITaxon:7711 ! Chordata


show annotations for term's descendants           Sort by:
odontogenesis of dentin-containing tooth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR2A activin A receptor type 2A acts_upstream_of_or_within ISO (PMID:16330774) MGI PMID:16330774 NCBI chr19:49,642,429...49,726,720
Ensembl chr19:49,641,219...49,723,420 		JBrowse link
G ACVR2B activin A receptor type 2B acts_upstream_of_or_within ISO (PMID:16330774)
(PMID:11714685)		 MGI PMID:11714685 PMID:16330774 NCBI chr23:8,211,555...8,225,596
Ensembl chr23:8,192,483...8,218,894 		JBrowse link
G ADM adrenomedullin ISO RGD PMID:19828015 RGD:2325629 NCBI chr21:33,472,197...33,474,472
Ensembl chr21:33,471,623...33,474,495 		JBrowse link
G AMBN ameloblastin involved_in IEA InterPro GO_REF:0000002 NCBI chr13:59,899,968...59,912,699
Ensembl chr13:59,899,960...59,912,655 		JBrowse link
G AMELX amelogenin X-linked involved_in ISO (MGI:3828400|PMID:16674683) BHF-UCL PMID:16674683 MGI:3828400 NCBI chr  X:7,822,513...7,828,692
Ensembl chr  X:7,822,859...7,830,351 		JBrowse link
G AMTN amelotin involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr13:59,855,278...59,867,133
Ensembl chr13:59,852,490...59,867,516 		JBrowse link
G ANKRD11 ankyrin repeat domain containing 11 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:21782149) MGI
Ensembl		 PMID:21782149 GO_REF:0000107 NCBI chr 5:64,047,188...64,229,582
Ensembl chr 5:64,047,175...64,229,077 		JBrowse link
G B9D2 B9 domain containing 2 ISO RGD PMID:29175126 RGD:14995479 NCBI chr 1:112,621,832...112,627,726
Ensembl chr 1:112,621,633...112,643,885 		JBrowse link
G BAX BCL2 associated X, apoptosis regulator involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15967824) Ensembl
MGI		 PMID:15967824 GO_REF:0000107 NCBI chr 1:107,423,388...107,426,464
Ensembl chr 1:107,422,424...107,426,464 		JBrowse link
G BCL11B BCL11 transcription factor B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19251658) Ensembl
MGI		 PMID:19251658 GO_REF:0000107 NCBI chr 8:67,622,592...67,713,922
Ensembl chr 8:67,622,708...67,714,404 		JBrowse link
G BCL2L11 BCL2 like 11 acts_upstream_of_or_within ISO (PMID:15967824) MGI PMID:15967824 NCBI chr17:35,619,804...35,665,782
Ensembl chr17:35,619,582...35,664,587 		JBrowse link
G BMP2 bone morphogenetic protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15525533) Ensembl
MGI		 PMID:15525533 GO_REF:0000107 NCBI chr24:15,199,667...15,211,509
Ensembl chr24:15,200,291...15,212,217 		JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16179481)
(PMID:15525533), (PMID:16179481)		 Ensembl
MGI		 PMID:15525533 PMID:16179481 GO_REF:0000107 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557 		JBrowse link
G BMP7 bone morphogenetic protein 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15525533) Ensembl
MGI		 PMID:15525533 GO_REF:0000107 NCBI chr24:42,203,183...42,294,105
Ensembl chr24:42,204,823...42,294,653 		JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15716346) Ensembl
MGI		 PMID:15716346 GO_REF:0000107 NCBI chr 4:34,499,898...34,582,481
Ensembl chr 4:34,517,492...34,578,923 		JBrowse link
G BSG basigin ISO RGD PMID:17684756 RGD:2289060 NCBI chr20:57,942,703...57,951,089
Ensembl chr20:57,943,276...57,951,061 		JBrowse link
G CA2 carbonic anhydrase 2 ISO RGD PMID:8766158 RGD:1600721 NCBI chr29:31,959,225...31,975,309
Ensembl chr29:31,935,172...31,980,579 		JBrowse link
G CCDC154 coiled-coil domain containing 154 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20121924) Ensembl
MGI		 PMID:20121924 GO_REF:0000107 NCBI chr 6:39,356,234...39,364,053
Ensembl chr 6:39,357,273...39,364,740 		JBrowse link
G CHUK component of inhibitor of nuclear factor kappa B kinase complex acts_upstream_of_or_within ISO (PMID:14960276) MGI PMID:14960276 NCBI chr28:12,964,670...13,001,557
Ensembl chr28:12,965,479...13,001,512 		JBrowse link
G CTNNA1 catenin alpha 1 ISO RGD PMID:10681393 RGD:2289810 NCBI chr11:26,273,322...26,459,497
Ensembl chr11:26,143,013...26,459,091 		JBrowse link
G CTNNB1 catenin beta 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15866165) RGD
MGI
Ensembl		 PMID:10681393 PMID:15866165 GO_REF:0000107 RGD:2289810 NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927 		JBrowse link
G DLX1 distal-less homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9187081) Ensembl
MGI		 PMID:9187081 GO_REF:0000107 NCBI chr36:16,485,158...16,489,397
Ensembl chr36:16,484,859...16,487,886 		JBrowse link
G DLX2 distal-less homeobox 2 acts_upstream_of_or_within ISO (PMID:9187081) MGI PMID:9187081 NCBI chr36:16,499,009...16,502,365
Ensembl chr36:16,484,302...16,502,510 		JBrowse link
G DLX3 distal-less homeobox 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22351765) Ensembl
MGI		 PMID:22351765 GO_REF:0000107 NCBI chr 9:26,018,101...26,022,964
Ensembl chr 9:26,017,689...26,022,736 		JBrowse link
G DSPP dentin sialophosphoprotein ISO RGD PMID:15533758 RGD:1599800 NCBI chr32:11,017,440...11,022,780 JBrowse link
G EDA ectodysplasin A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10610025), (PMID:5893447) Ensembl
MGI		 PMID:5893447 PMID:10610025 GO_REF:0000107 NCBI chr  X:54,078,694...54,515,535
Ensembl chr  X:54,078,966...54,515,535 		JBrowse link
G EDAR ectodysplasin A receptor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:544312) Ensembl
MGI		 PMID:544312 GO_REF:0000107 NCBI chr10:34,873,311...34,943,140
Ensembl chr10:34,848,526...34,940,784 		JBrowse link
G EDARADD EDAR associated death domain acts_upstream_of_or_within ISO (PMID:14699584), (PMID:5893447) MGI PMID:5893447 PMID:14699584 NCBI chr 4:3,608,545...3,659,357
Ensembl chr 4:3,610,079...3,669,789 		JBrowse link
G ENAM enamelin acts_upstream_of_or_within ISO (PMID:15271968) MGI PMID:15271968 NCBI chr13:59,934,299...59,948,279
Ensembl chr13:59,934,299...59,947,949 		JBrowse link
G FGF10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11062007), (PMID:11880361) Ensembl
MGI		 PMID:11062007 PMID:11880361 GO_REF:0000107 NCBI chr 4:65,851,130...65,930,944
Ensembl chr 4:65,851,069...65,928,192 		JBrowse link
G FGF4 fibroblast growth factor 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12502739) Ensembl
MGI		 PMID:12502739 GO_REF:0000107 NCBI chr18:48,413,480...48,417,494
Ensembl chr18:48,413,187...48,416,977 		JBrowse link
G FOXC1 forkhead box C1 involved_in IEA Ensembl GO_REF:0000107
G FOXI3 forkhead box I3 involved_in IMP (PMID:28710361) UniProt PMID:28710361 NCBI chr17:38,032,479...38,036,424
Ensembl chr17:38,032,479...38,037,630 		JBrowse link
G FST follistatin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15305290), (PMID:15525533) Ensembl
MGI		 PMID:15305290 PMID:15525533 GO_REF:0000107 NCBI chr 4:61,779,252...61,785,666
Ensembl chr 4:61,779,259...61,783,260 		JBrowse link
G GATA6 GATA binding protein 6 ISO RGD PMID:17923110 RGD:2314196 NCBI chr 7:65,932,114...65,962,574 JBrowse link
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9655803) Ensembl
MGI		 PMID:9655803 GO_REF:0000107 NCBI chr19:29,128,401...29,383,324
Ensembl chr19:29,130,227...29,383,658 		JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9655803) Ensembl
MGI		 PMID:9655803 GO_REF:0000107 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132 		JBrowse link
G GNAO1 G protein subunit alpha o1 ISO RGD PMID:28706494 RGD:13513970 NCBI chr 2:59,805,675...59,980,782
Ensembl chr 2:59,806,689...59,980,398 		JBrowse link
G HAND1 heart and neural crest derivatives expressed 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17764670) Ensembl
MGI		 PMID:17764670 GO_REF:0000107 NCBI chr 4:55,231,061...55,234,640
Ensembl chr 4:55,231,481...55,234,265 		JBrowse link
G HAND2 heart and neural crest derivatives expressed 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17764670) Ensembl
MGI		 PMID:17764670 GO_REF:0000107 NCBI chr25:24,140,496...24,143,143
Ensembl chr25:24,141,243...24,152,958 		JBrowse link
G HDAC1 histone deacetylase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:68,901,339...68,936,473
Ensembl chr 2:68,901,651...68,936,186 		JBrowse link
G HDAC2 histone deacetylase 2 involved_in ISO (MGI:4889029|PMID:21093383) BHF-UCL PMID:21093383 MGI:4889029 NCBI chr12:70,053,822...70,083,491
Ensembl chr12:70,053,297...70,103,578 		JBrowse link
G ITGA6 integrin subunit alpha 6 acts_upstream_of_or_within ISO (PMID:16365040) MGI PMID:16365040 NCBI chr36:16,777,363...16,858,725
Ensembl chr36:16,776,863...16,855,449 		JBrowse link
G JAG2 jagged canonical Notch ligand 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15721140) Ensembl
MGI		 PMID:15721140 GO_REF:0000107 NCBI chr 8:72,535,539...72,553,531
Ensembl chr 8:72,535,107...72,550,322 		JBrowse link
G LAMA5 laminin subunit alpha 5 acts_upstream_of_or_within ISO (PMID:16365040) MGI PMID:16365040 NCBI chr24:46,315,008...46,351,279 JBrowse link
G LEF1 lymphoid enhancer binding factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17699607)
(PMID:12502739), (PMID:15649466)		 Ensembl
MGI		 PMID:12502739 PMID:15649466 PMID:17699607 GO_REF:0000107 NCBI chr32:28,516,002...28,633,759
Ensembl chr32:28,517,108...28,634,019 		JBrowse link
G LHX8 LIM homeobox 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12703558) Ensembl
MGI		 PMID:12703558 GO_REF:0000107 NCBI chr 6:71,329,711...71,355,851
Ensembl chr 6:71,329,820...71,352,945 		JBrowse link
G LRP4 LDL receptor related protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17119023) Ensembl
MGI		 PMID:17119023 GO_REF:0000107 NCBI chr18:42,616,683...42,667,297
Ensembl chr18:42,616,426...42,665,794 		JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:5893447), (PMID:591875) MGI PMID:591875 PMID:5893447 MGI:61211 MGI:61254 NCBI chr27:34,003,334...34,166,334
Ensembl chr27:34,003,539...34,161,437 		JBrowse link
G MSX1 msh homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:70,232,790...70,236,295
Ensembl chr 3:70,232,052...70,236,447 		JBrowse link
G NF2 NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10887156) Ensembl
MGI		 PMID:10887156 GO_REF:0000107 NCBI chr26:22,816,869...22,896,103
Ensembl chr26:22,816,551...22,894,196 		JBrowse link
G NFIC nuclear factor I C acts_upstream_of_or_within ISO (PMID:12529411) MGI PMID:12529411 NCBI chr20:55,920,614...55,980,307
Ensembl chr20:55,914,855...56,014,907 		JBrowse link
G NGFR nerve growth factor receptor involved_in
acts_upstream_of		 IEA
ISO		 (PMID:9268129) Ensembl
MGI		 PMID:9268129 GO_REF:0000107 NCBI chr 9:25,598,468...25,621,021
Ensembl chr 9:25,601,074...25,623,274 		JBrowse link
G NKX2-3 NK2 homeobox 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12141427) Ensembl
MGI		 PMID:12141427 GO_REF:0000107 NCBI chr28:12,466,319...12,469,467
Ensembl chr28:12,466,368...12,469,473 		JBrowse link
G ODAM odontogenic, ameloblast associated involved_in IEA
IBA		 Ensembl
GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr13:59,588,642...59,597,873
Ensembl chr13:59,588,647...59,597,873 		JBrowse link
G PDGFRA platelet derived growth factor receptor alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15543606) Ensembl
MGI		 PMID:15543606 GO_REF:0000107 NCBI chr13:46,729,722...46,775,828
Ensembl chr13:46,730,703...46,773,278 		JBrowse link
G PITX2 paired like homeodomain 2 ISO RGD PMID:16416307 RGD:2289007 NCBI chr32:30,710,161...30,730,162
Ensembl chr32:30,710,685...30,730,273 		JBrowse link
G ROGDI rogdi atypical leucine zipper involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:36,618,670...36,624,533
Ensembl chr 6:36,491,561...36,624,532 		JBrowse link
G RUNX2 RUNX family transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15136142)
(PMID:15668330)		 Ensembl
MGI		 PMID:15136142 PMID:15668330 GO_REF:0000107 NCBI chr12:13,723,535...13,842,565
Ensembl chr12:13,628,539...13,840,785
Ensembl chr12:13,628,539...13,840,785 		JBrowse link
G SCN10A sodium voltage-gated channel alpha subunit 10 ISO RGD PMID:21640979 RGD:6484223 NCBI chr23:8,420,468...8,527,414
Ensembl chr23:8,420,472...8,527,383 		JBrowse link
G SCN5A sodium voltage-gated channel alpha subunit 5 ISO RGD PMID:21640979 RGD:6484223 NCBI chr23:8,278,844...8,374,614
Ensembl chr23:8,280,793...8,358,560 		JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11044393) Ensembl
MGI		 PMID:11044393 GO_REF:0000107 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903 		JBrowse link
G SMO smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12403705)
(PMID:17199044)		 Ensembl
MGI		 PMID:12403705 PMID:17199044 GO_REF:0000107 NCBI chr14:7,518,871...7,527,703
Ensembl chr14:7,518,856...7,528,033 		JBrowse link
G SOSTDC1 sclerostin domain containing 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16179481) Ensembl
MGI		 PMID:16179481 GO_REF:0000107 NCBI chr14:31,035,759...31,079,139
Ensembl chr14:31,022,766...31,026,737
Ensembl chr14:31,022,766...31,026,737 		JBrowse link
G TBX1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:19233155), (PMID:20816801) MGI PMID:19233155 PMID:20816801 NCBI chr26:29,529,071...29,533,240
Ensembl chr26:29,528,878...29,532,784 		JBrowse link
G TCF7L2 transcription factor 7 like 2 acts_upstream_of_or_within ISO (PMID:17699607) MGI PMID:17699607 NCBI chr28:23,966,079...24,162,775
Ensembl chr28:23,966,073...24,163,737 		JBrowse link
G TNC tenascin C ISO RGD PMID:12971948 RGD:4889616 NCBI chr11:69,077,532...69,169,673
Ensembl chr11:69,077,535...69,170,281 		JBrowse link
G TP63 tumor protein p63 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16410075)
(PMID:16524929)		 Ensembl
MGI		 PMID:16410075 PMID:16524929 GO_REF:0000107 NCBI chr34:21,766,861...21,985,095
Ensembl chr34:21,766,496...21,983,046 		JBrowse link
G TRAF6 TNF receptor associated factor 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14699584) Ensembl
MGI		 PMID:14699584 GO_REF:0000107 NCBI chr18:31,674,242...31,689,160
Ensembl chr18:31,675,391...31,688,641 		JBrowse link
G WNT6 Wnt family member 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr37:25,452,875...25,457,437
Ensembl chr37:25,453,905...25,456,654 		JBrowse link
G WNT7B Wnt family member 7B acts_upstream_of_or_within ISO (PMID:10781055) MGI PMID:10781055 NCBI chr10:20,160,916...20,208,786
Ensembl chr10:20,160,206...20,243,160 		JBrowse link
amelogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMELX amelogenin X-linked involved_in ISO (MGI:6716964|PMID:26403673) ARUK-UCL PMID:26403673 MGI:6716964 NCBI chr  X:7,822,513...7,828,692
Ensembl chr  X:7,822,859...7,830,351 		JBrowse link
G ASCL5 achaete-scute family bHLH transcription factor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:2,106,480...2,107,046 JBrowse link
G ATF2 activating transcription factor 2 ISO RGD PMID:15218628 RGD:10053659 NCBI chr36:19,032,376...19,103,382
Ensembl chr36:19,010,717...19,103,292 		JBrowse link
G CFTR CF transmembrane conductance regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:56,290,417...56,452,919
Ensembl chr14:56,290,275...56,453,977 		JBrowse link
G CSF3R colony stimulating factor 3 receptor ISO RGD PMID:10206335 RGD:5134351 NCBI chr15:5,818,985...5,832,455
Ensembl chr15:5,822,025...5,831,882 		JBrowse link
G DSPP dentin sialophosphoprotein acts_upstream_of_or_within ISO (PMID:25027178) MGI PMID:25027178 NCBI chr32:11,017,440...11,022,780 JBrowse link
G ENAM enamelin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18252720), (PMID:24603688)
(PMID:22813216)
(PMID:15649948)		 TreeGrafter
MGI		 PMID:15649948 PMID:18252720 PMID:22813216 PMID:24603688 GO_REF:0000118 NCBI chr13:59,934,299...59,948,279
Ensembl chr13:59,934,299...59,947,949 		JBrowse link
G KLK4 kallikrein related peptidase 4 acts_upstream_of_or_within
involved_in		 ISO (PMID:19578120), (PMID:21454549), (PMID:22243248)
(PMID:15235027)		 MGI
UniProt		 PMID:15235027 PMID:19578120 PMID:21454549 PMID:22243248 NCBI chr 1:105,950,948...105,955,464
Ensembl chr 1:105,951,691...106,007,581 		JBrowse link
G KLK4 kallikrein related peptidase 4 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118
G KLK5 kallikrein related peptidase 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:105,914,040...105,922,639
Ensembl chr 1:105,914,460...105,922,296 		JBrowse link
G KLK6 kallikrein related peptidase 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:105,902,147...105,907,585 JBrowse link
G MMP20 matrix metallopeptidase 20 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15557396), (PMID:21454549), (PMID:22243248) Ensembl
MGI
TreeGrafter		 PMID:15557396 PMID:21454549 PMID:22243248 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:29,106,717...29,154,628
Ensembl chr 5:29,106,717...29,155,071 		JBrowse link
G PERP p53 apoptosis effector related to PMP22 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21285247) Ensembl
MGI		 PMID:21285247 GO_REF:0000107 NCBI chr 1:30,418,847...30,435,287
Ensembl chr 1:30,419,963...30,435,859 		JBrowse link
G RELT RELT TNF receptor involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr21:24,835,792...24,854,739
Ensembl chr21:24,836,858...24,854,023 		JBrowse link
G ROGDI rogdi atypical leucine zipper acts_upstream_of_or_within ISO (PMID:38172607) MGI PMID:38172607 NCBI chr 6:36,618,670...36,624,533
Ensembl chr 6:36,491,561...36,624,532 		JBrowse link
G SLC24A4 solute carrier family 24 member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:1,570,833...1,685,135
Ensembl chr 8:1,517,560...1,680,208 		JBrowse link
G SLC4A2 solute carrier family 4 member 2 involved_in ISO (MGI:6716964|PMID:26403673) ARUK-UCL PMID:26403673 MGI:6716964 NCBI chr16:15,111,078...15,126,618
Ensembl chr16:15,111,116...15,126,617 		JBrowse link
dentin mineralization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TCIRG1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23174213) Ensembl
MGI		 PMID:23174213 GO_REF:0000107 NCBI chr18:49,784,480...49,794,361
Ensembl chr18:49,784,490...49,794,317 		JBrowse link
dentinogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DSPP dentin sialophosphoprotein acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25027178) RGD
MGI
TreeGrafter		 PMID:24502800 PMID:25027178 GO_REF:0000118 RGD:12911210 NCBI chr32:11,017,440...11,022,780 JBrowse link
G FAM20C FAM20C golgi associated secretory pathway kinase acts_upstream_of_or_within ISO (PMID:22732358) MGI PMID:22732358 NCBI chr 6:16,448,603...16,497,064
Ensembl chr 6:16,448,588...16,497,752 		JBrowse link
G HTRA1 HtrA serine peptidase 1 ISO RGD PMID:22595117 RGD:7394756 NCBI chr28:32,133,779...32,157,835
Ensembl chr28:32,132,547...32,157,409 		JBrowse link
G SERPINE1 serpin family E member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:8,719,547...8,727,160
Ensembl chr 6:8,720,825...8,726,301 		JBrowse link
G SLC34A1 solute carrier family 34 member 1 ISO RGD PMID:12369784 RGD:7243151 NCBI chr 4:35,961,394...35,973,733
Ensembl chr 4:35,961,958...35,973,657 		JBrowse link
G SMPD3 sphingomyelin phosphodiesterase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16025116) Ensembl
MGI		 PMID:16025116 GO_REF:0000107 NCBI chr 5:81,089,657...81,172,173
Ensembl chr 5:81,142,888...81,172,189 		JBrowse link
enamel mineralization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMELX amelogenin X-linked involved_in IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr  X:7,822,513...7,828,692
Ensembl chr  X:7,822,859...7,830,351 		JBrowse link
G CFTR CF transmembrane conductance regulator ISO RGD PMID:31942562 RGD:126928119 NCBI chr14:56,290,417...56,452,919
Ensembl chr14:56,290,275...56,453,977 		JBrowse link
G CNNM4 cyclin and CBS domain divalent metal cation transport mediator 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24339795) Ensembl
MGI		 PMID:24339795 GO_REF:0000107 NCBI chr10:45,157,418...45,197,323
Ensembl chr10:45,138,538...45,197,244 		JBrowse link
G FAM20A FAM20A golgi associated secretory pathway pseudokinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22732358) Ensembl
MGI
TreeGrafter		 PMID:22732358 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:15,205,887...15,218,873
Ensembl chr 9:15,207,300...15,230,447 		JBrowse link
G FAM20C FAM20C golgi associated secretory pathway kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22732358) TreeGrafter
MGI		 PMID:22732358 GO_REF:0000118 NCBI chr 6:16,448,603...16,497,064
Ensembl chr 6:16,448,588...16,497,752 		JBrowse link
G FOXO1 forkhead box O1 ISO RGD PMID:25183529 RGD:10044263 NCBI chr25:603,433...706,961
Ensembl chr25:603,543...702,825 		JBrowse link
G ITGB6 integrin subunit beta 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23264742) Ensembl
MGI		 PMID:23264742 GO_REF:0000107 NCBI chr36:5,833,206...5,962,699
Ensembl chr36:5,834,638...5,962,633 		JBrowse link
G LOC119868741 amelogenin, X isoform-like involved_in IEA TreeGrafter GO_REF:0000118
G MSX2 msh homeobox 2 acts_upstream_of_or_within ISO (PMID:10742104) MGI PMID:10742104 NCBI chr 4:38,002,724...38,007,407
Ensembl chr 4:38,002,428...38,007,407 		JBrowse link
G NECTIN1 nectin cell adhesion molecule 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18703497) Ensembl
MGI		 PMID:18703497 GO_REF:0000107 NCBI chr 5:14,228,197...14,292,825
Ensembl chr 5:14,228,197...14,315,060 		JBrowse link
G PPARA peroxisome proliferator activated receptor alpha acts_upstream_of_or_within ISO (PMID:19320717) MGI PMID:19320717 NCBI chr10:19,934,020...20,006,096
Ensembl chr10:19,934,165...20,006,146 		JBrowse link
G ROGDI rogdi atypical leucine zipper acts_upstream_of_or_within ISO (PMID:38172607) MGI PMID:38172607 NCBI chr 6:36,618,670...36,624,533
Ensembl chr 6:36,491,561...36,624,532 		JBrowse link
G STIM1 stromal interaction molecule 1 involved_in ISO (PMID:24621671) UniProt PMID:24621671 NCBI chr21:26,394,592...26,594,764
Ensembl chr21:26,394,811...26,593,375 		JBrowse link
G TBX1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:19233155) MGI PMID:19233155 NCBI chr26:29,529,071...29,533,240
Ensembl chr26:29,528,878...29,532,784 		JBrowse link
G TCIRG1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23174213) Ensembl
MGI		 PMID:23174213 GO_REF:0000107 NCBI chr18:49,784,480...49,794,361
Ensembl chr18:49,784,490...49,794,317 		JBrowse link
G WDR72 WD repeat domain 72 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25008349)
(PMID:26247047)		 Ensembl
MGI		 PMID:25008349 PMID:26247047 GO_REF:0000107 NCBI chr30:19,120,021...19,340,781
Ensembl chr30:19,122,674...19,326,874 		JBrowse link
negative regulation of odontogenesis of dentin-containing tooth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RSPO2 R-spondin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24616052) Ensembl
MGI		 PMID:24616052 GO_REF:0000107 NCBI chr13:8,610,227...8,755,727
Ensembl chr13:8,611,952...8,754,859 		JBrowse link
G TNFRSF11B TNF receptor superfamily member 11b acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:14981127) RGD
MGI
Ensembl		 PMID:14981127 PMID:16283633 GO_REF:0000107 RGD:1624174 NCBI chr13:18,155,765...18,183,263
Ensembl chr13:18,156,367...18,183,444 		JBrowse link
positive regulation of enamel mineralization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMTN amelotin involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr13:59,855,278...59,867,133
Ensembl chr13:59,852,490...59,867,516 		JBrowse link
G CFTR CF transmembrane conductance regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:56,290,417...56,452,919
Ensembl chr14:56,290,275...56,453,977 		JBrowse link
G DSPP dentin sialophosphoprotein acts_upstream_of_or_within ISO (PMID:16014627) MGI PMID:16014627 NCBI chr32:11,017,440...11,022,780 JBrowse link
G ENAM enamelin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24603688) TreeGrafter
MGI		 PMID:24603688 GO_REF:0000118 NCBI chr13:59,934,299...59,948,279
Ensembl chr13:59,934,299...59,947,949 		JBrowse link
G ODAPH odontogenesis associated phosphoprotein involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr32:133,974...141,303
Ensembl chr32:133,816...140,958 		JBrowse link
G SLC4A2 solute carrier family 4 member 2 involved_in ISO (MGI:6716964|PMID:26403673) ARUK-UCL PMID:26403673 MGI:6716964 NCBI chr16:15,111,078...15,126,618
Ensembl chr16:15,111,116...15,126,617 		JBrowse link
positive regulation of odontogenesis of dentin-containing tooth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CSF1 colony stimulating factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12865350) Ensembl
MGI		 PMID:12865350 GO_REF:0000107 NCBI chr 6:42,028,454...42,047,028
Ensembl chr 6:42,034,149...42,049,371 		JBrowse link
G NGFR nerve growth factor receptor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9268129) Ensembl
MGI		 PMID:9268129 GO_REF:0000107 NCBI chr 9:25,598,468...25,621,021
Ensembl chr 9:25,601,074...25,623,274 		JBrowse link
G PRKCB protein kinase C beta ISO RGD PMID:15763930 RGD:1625521 NCBI chr 6:21,742,970...22,064,360
Ensembl chr 6:21,742,973...22,065,185 		JBrowse link
regulation of enamel mineralization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B9D2 B9 domain containing 2 acts_upstream_of ISO (PMID:30243146), (PMID:31336344) MGI PMID:30243146 PMID:31336344 NCBI chr 1:112,621,832...112,627,726
Ensembl chr 1:112,621,633...112,643,885 		JBrowse link
G DICER1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (PMID:20102707) MGI PMID:20102707 NCBI chr 8:63,970,245...64,029,438
Ensembl chr 8:63,972,027...64,019,879 		JBrowse link
G DMP1 dentin matrix acidic phosphoprotein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16014627) Ensembl
MGI		 PMID:16014627 GO_REF:0000107 NCBI chr32:11,022,900...11,053,900
Ensembl chr32:11,045,508...11,053,252 		JBrowse link
G TGFB1 transforming growth factor beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:112,629,476...112,643,885
Ensembl chr 1:112,621,633...112,643,885 		JBrowse link
regulation of odontogenesis of dentin-containing tooth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APCDD1 APC down-regulated 1 involved_in ISO (MGI:6379934|PMID:26170146) CACAO PMID:26170146 MGI:6379934 NCBI chr 7:76,336,502...76,368,695
Ensembl chr 7:76,336,547...76,367,267 		JBrowse link
G BMP2 bone morphogenetic protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9244299) Ensembl
MGI		 PMID:9244299 GO_REF:0000107 NCBI chr24:15,199,667...15,211,509
Ensembl chr24:15,200,291...15,212,217 		JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9244299) Ensembl
MGI		 PMID:9244299 GO_REF:0000107 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557 		JBrowse link
G DICER1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (PMID:20102707) MGI PMID:20102707 NCBI chr 8:63,970,245...64,029,438
Ensembl chr 8:63,972,027...64,019,879 		JBrowse link
G DMRT3 doublesex and mab-3 related transcription factor 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17803355) Ensembl
MGI		 PMID:17803355 GO_REF:0000107 NCBI chr 1:89,798,215...89,813,140
Ensembl chr 1:89,798,100...89,812,328 		JBrowse link
G FGF8 fibroblast growth factor 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9244299) Ensembl
MGI		 PMID:9244299 GO_REF:0000107 NCBI chr28:14,362,407...14,367,109
Ensembl chr28:14,362,109...14,367,468 		JBrowse link
G IFT88 intraflagellar transport 88 acts_upstream_of_or_within ISO (PMID:12701101) MGI PMID:12701101 NCBI chr25:17,414,965...17,551,405
Ensembl chr25:17,414,965...17,551,266 		JBrowse link
G RUNX2 RUNX family transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14688224) Ensembl
MGI		 PMID:14688224 GO_REF:0000107 NCBI chr12:13,723,535...13,842,565
Ensembl chr12:13,628,539...13,840,785
Ensembl chr12:13,628,539...13,840,785 		JBrowse link
G WNT10A Wnt family member 10A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17286598) Ensembl
MGI		 PMID:17286598 GO_REF:0000107 NCBI chr37:25,463,064...25,475,407
Ensembl chr37:25,462,748...25,474,764 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17917
    developmental process 6831
      anatomical structure morphogenesis 3004
        animal organ morphogenesis 1179
          odontogenesis 154
            odontogenesis of dentin-containing tooth 113
              amelogenesis + 36
              dentin extracellular matrix secretion 0
              dentinogenesis + 7
              negative regulation of odontogenesis of dentin-containing tooth 2
              positive regulation of odontogenesis of dentin-containing tooth + 3
              regulation of odontogenesis of dentin-containing tooth + 14
              tooth placode formation 0
Path 2
Term Annotations click to browse term
  biological_process 17917
    developmental process 6831
      anatomical structure development 6414
        anatomical structure morphogenesis 3004
          animal organ morphogenesis 1179
            odontogenesis 154
              odontogenesis of dentin-containing tooth 113
                amelogenesis + 36
                dentin extracellular matrix secretion 0
                dentinogenesis + 7
                negative regulation of odontogenesis of dentin-containing tooth 2
                positive regulation of odontogenesis of dentin-containing tooth + 3
                regulation of odontogenesis of dentin-containing tooth + 14
                tooth placode formation 0
paths to the root