ODAM (odontogenic, ameloblast associated)

Gene: ODAM (odontogenic, ameloblast associated) Canis lupus familiaris

Analyze

Symbol:

ODAM

Name:

odontogenic, ameloblast associated

RGD ID:

12334044

Description:

INVOLVED IN odontogenesis (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cell periphery (inferred); cytoplasm (inferred); cytosol (inferred)

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

APIN; odontogenic ameloblast-associated protein; odontogenic, ameloblast asssociated

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	59,588,642 - 59,597,873 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	59,588,647 - 59,597,873 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	59,315,664 - 59,324,921 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	60,383,221 - 60,392,488 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	60,383,221 - 60,392,488 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	59,997,363 - 60,006,605 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	59,501,814 - 59,511,051 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	60,648,776 - 60,658,033 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biomineral tissue development (IEA)

inflammatory response (IEA)

odontogenesis (ISO)

odontogenesis of dentin-containing tooth (IBA,IEA)

positive regulation of epithelial cell proliferation involved in wound healing (IEA)

positive regulation of gene expression (IEA)

positive regulation of protein phosphorylation (IEA)

regulation of actin cytoskeleton organization (IEA)

response to wounding (IEA)

Cellular Component

cell periphery (IEA)

cytoplasm (IBA,IEA)

cytosol (IEA)

extracellular region (IEA)

extracellular space (IEA)

mitotic spindle (IEA)

nucleoplasm (IEA)

nucleus (IBA,IEA)

supramolecular fiber (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:16674676

Genomics

Comparative Map Data

ODAM
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	59,588,642 - 59,597,873 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	59,588,647 - 59,597,873 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	59,315,664 - 59,324,921 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	60,383,221 - 60,392,488 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	60,383,221 - 60,392,488 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	59,997,363 - 60,006,605 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	59,501,814 - 59,511,051 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	60,648,776 - 60,658,033 (+)	NCBI		UU_Cfam_GSD_1.0

ODAM
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	70,195,725 - 70,204,576 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	70,195,725 - 70,204,576 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	71,061,442 - 71,070,293 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	71,096,833 - 71,104,882 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	4	68,420,214 - 68,428,263 (+)	NCBI		Celera
Cytogenetic Map	4	q13.3	NCBI
HuRef	4	66,864,474 - 66,872,522 (+)	NCBI		HuRef
CHM1_1	4	71,098,652 - 71,106,701 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	73,535,038 - 73,543,889 (+)	NCBI		T2T-CHM13v2.0

Odam
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	88,032,869 - 88,042,668 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	88,032,888 - 88,042,033 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	87,885,010 - 87,894,809 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	87,885,029 - 87,894,174 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	88,314,720 - 88,321,770 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	88,962,048 - 88,968,733 (+)	NCBI		MGSCv36	mm8
MGSCv36	5	87,491,886 - 87,498,571 (+)	NCBI		MGSCv36	mm8
Cytogenetic Map	5	E1	NCBI
cM Map	5	43.56	NCBI

Odam
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	20,472,530 - 20,496,752 (-)	NCBI		GRCr8
mRatBN7.2	14	20,193,286 - 20,202,517 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	20,193,302 - 20,202,517 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	20,123,607 - 20,132,626 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	21,442,493 - 21,451,512 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	20,173,243 - 20,182,287 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	21,842,990 - 21,852,216 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	21,842,990 - 21,852,216 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	21,753,075 - 21,767,321 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	21,714,378 - 21,724,054 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	14	19,595,876 - 19,605,037 (-)	NCBI		Celera
Cytogenetic Map	14	p21	NCBI

Odam
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955447	2,653,815 - 2,661,043 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955447	2,653,815 - 2,661,043 (-)	NCBI	ChiLan1.0	ChiLan1.0

ODAM
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	59,878,118 - 59,887,218 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	60,074,401 - 60,083,715 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	54,019,039 - 54,028,085 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	60,362,655 - 60,370,747 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	60,362,655 - 60,370,747 (-)	Ensembl	panpan1.1		panPan2

Odam
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	15,986,195 - 15,993,294 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936598	4,438,258 - 4,445,316 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936598	4,438,258 - 4,445,316 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ODAM
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	67,058,472 - 67,066,564 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	67,059,284 - 67,068,117 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	148,456,188 - 148,465,034 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ODAM
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	18,676,794 - 18,687,325 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	18,678,422 - 18,685,932 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666084	4,236,479 - 4,251,148 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Odam
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624890	1,623,562 - 1,629,960 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624890	1,622,846 - 1,631,114 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in ODAM
143 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	endocrine system	reproductive system	respiratory system	adipose tissue
High
Medium
Low		3	3
Below cutoff	1	2	5	1	1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001097551	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022426505	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EF121758	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000148	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000361	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000004609 ⟹ ENSCAFP00000004263

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	13	59,588,647 - 59,597,873 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00000063621 ⟹ ENSCAFP00000051203

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	13	59,588,647 - 59,597,873 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845018290 ⟹ ENSCAFP00845014271

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	13	60,383,221 - 60,392,488 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845018353 ⟹ ENSCAFP00845014328

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	13	60,383,221 - 60,392,488 (+)	Ensembl

RefSeq Acc Id:

NM_001097551 ⟹ NP_001091020

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	13	59,588,647 - 59,597,873 (+)	NCBI
Dog10K_Boxer_Tasha	13	59,315,664 - 59,324,921 (+)	NCBI
ROS_Cfam_1.0	13	60,383,221 - 60,392,488 (+)	NCBI
UMICH_Zoey_3.1	13	59,997,363 - 60,006,605 (+)	NCBI
UNSW_CanFamBas_1.0	13	59,501,814 - 59,511,051 (+)	NCBI
UU_Cfam_GSD_1.0	13	60,648,776 - 60,658,033 (+)	NCBI

Sequence:

show sequence

CTAGATATTTCATCTGAAAATGAAAACCATAATTCTTCTTGGGCTACTAGGAGCCACAATGTCA
GCCCCACTTATCCCACAGCGCCTTATGTCTGCAAGCAACAGCAATGAGTTACTTCTGAATCTTA
ATAATGCTCAACTTCAGCCACTACCATTTCAGGGCCCATTTAACTCATGGATTCCTCCTTTCTC
TGGGATTCTACAACAGCAGCAGCAAGCTCAAATTCCAGGGCTCTCGCAATTCTCTTTATCAGCT
CTTGATCGGTTTGCTGGACTGTTCCCAAACCAAACACCTTTCCCAGGACGGGTTAGTTTTGCCC
AAGGAACCCAGGTGGGACAGCAGGACCCCTCACAGCCTCAAACACCACCACAGACCCAGCAGAG
CCCTAATCATGTTATGCCCTATGTGTTCTCCTTCAAAATGCCTCAAGAACAAGCACAGATGCTT
CAGTACTATCCAGTCTACATGCTCCTACCCTGGGAGCAATCTCAACAAACAGCCCCACAGTCAC
CTCCACAAACAGGACAGCAGCAATTTGAGGAGCAGATGCCATTCTATACTCAGTTTGGATATGT
TCCAGTACAAGTAGAACCTGTTATGCCAGGAGGACAGCAGCAATTAGCCCTAGATCCCGTCCTA
GGCACAGCTCCTGAAACTGTTGTAATGCCAGCAGGAGTGATACCATACTTACGAAAAGAAGTGA
TAAACTTTAAGCATGCCAATGGAGGAATTTTTGTTCCTTCAACCTCACAAACACCCAGCACTAC
AAATTATTTTGCTCCTGCTATTGACCCAACTATTACCCCAGAGTTGATGGAAAAGAAGGCCAAG
ACTGATTACTTAAAGGAACCGTAAGACACTGTCTTAATCATTCAGAGTTTTTGAGAAAAAGTTA
TGGCAGTGCCTCGGATATCATTTTAGGCCATTTGATTCCTCGATGCTAACATCAGTTCTTTGAA
ATATACAAAATACTCTTCTCTTGAAATTCTTTTTACTTATAGTTTTACACTCTTTAAGGAAATC
ATAGAAAATAATACAATCATATAAGTCTTGTCTTTATAAAATTATGCTTCATTTCAAATATCCT
ATCATTGTATAATCTAGAAAATAACAATGAGAATAAAGCTAATAAAGATGGATCAACTAGATCA
TTGTATTTGTAATGTATTAAAGATAGCTCTGGAAAATGAGAATAAAGATACGTTGTTGTTGGAT
TTACGAGTGTGGTGATTGTGACTAATGAACTAAAGTATGTACCT

hide sequence

Protein Sequences


Protein RefSeqs	NP_001091020	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	A1YQ91	(Get FASTA)	NCBI Sequence Viewer
	ABL63508	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000004263.3
	ENSCAFP00000051203.1
	ENSCAFP00030026698.1
	ENSCAFP00030026737.1
	ENSCAFP00040007820.1
	ENSCAFP00040007868.1
	ENSCAFP00805030606
	ENSCAFP00845014271
	ENSCAFP00845014271.1
	ENSCAFP00845014328.1

RefSeq Acc Id:	NP_001091020 ⟸ NM_001097551
- Peptide Label:	precursor
- UniProtKB:	A1YQ91 (UniProtKB/Swiss-Prot), A0A8C0Q2I6 (UniProtKB/TrEMBL), A0A8I3NF13 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKTIILLGLLGATMSAPLIPQRLMSASNSNELLLNLNNAQLQPLPFQGPFNSWIPPFSGILQQQ QQAQIPGLSQFSLSALDRFAGLFPNQTPFPGRVSFAQGTQVGQQDPSQPQTPPQTQQSPNHVMP YVFSFKMPQEQAQMLQYYPVYMLLPWEQSQQTAPQSPPQTGQQQFEEQMPFYTQFGYVPVQVEP VMPGGQQQLALDPVLGTAPETVVMPAGVIPYLRKEVINFKHANGGIFVPSTSQTPSTTNYFAPA IDPTITPELMEKKAKTDYLKEP hide sequence

RefSeq Acc Id:

ENSCAFP00000004263 ⟸ ENSCAFT00000004609

RefSeq Acc Id:

ENSCAFP00000051203 ⟸ ENSCAFT00000063621

RefSeq Acc Id:

ENSCAFP00845014328 ⟸ ENSCAFT00845018353

RefSeq Acc Id:

ENSCAFP00845014271 ⟸ ENSCAFT00845018290

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000002882	Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSCAFG00030016596	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSCAFG00040004790	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSCAFG00805021690	UniProtKB/Swiss-Prot
	ENSCAFG00845010379	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000004609.4	UniProtKB/Swiss-Prot
	ENSCAFT00000063621.2	UniProtKB/TrEMBL
	ENSCAFT00030030614.1	UniProtKB/Swiss-Prot
	ENSCAFT00030030653.1	UniProtKB/TrEMBL
	ENSCAFT00040009012.1	UniProtKB/Swiss-Prot
	ENSCAFT00040009061.1	UniProtKB/TrEMBL
	ENSCAFT00805039119	UniProtKB/Swiss-Prot
	ENSCAFT00845018290	ENTREZGENE
	ENSCAFT00845018290.1	UniProtKB/Swiss-Prot
	ENSCAFT00845018353.1	UniProtKB/TrEMBL
InterPro	Odam	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	cfa:611755	UniProtKB/Swiss-Prot
NCBI Gene	ODAM	ENTREZGENE
PANTHER	ODONTOGENIC AMELOBLAST-ASSOCIATED PROTEIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR16237	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	ODAM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8C0NH59_CANLF	UniProtKB/TrEMBL
	A0A8C0Q2I6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3NF13	ENTREZGENE, UniProtKB/TrEMBL
	A1YQ91	ENTREZGENE, UniProtKB/Swiss-Prot
VGNC ID	VGNC:44096	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-08-08	ODAM	odontogenic, ameloblast associated		odontogenic, ameloblast asssociated	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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