FAM20C (FAM20C golgi associated secretory pathway kinase) - Rat Genome Database

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Gene: FAM20C (FAM20C golgi associated secretory pathway kinase) Canis lupus familiaris
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Symbol: FAM20C
Name: FAM20C golgi associated secretory pathway kinase
RGD ID: 12432310
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); manganese ion binding (ortholog); protease binding (ortholog); INVOLVED IN biomineral tissue development (ortholog); dentinogenesis (ortholog); enamel mineralization (ortholog); ASSOCIATED WITH amelogenesis imperfecta; COVID-19 (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); extracellular space (ortholog); Golgi membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: extracellular serine/threonine protein kinase FAM20C; FAM20C, golgi associated secretory pathway kinase; family with sequence similarity 20, member C
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1616,448,603 - 16,497,064 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl616,448,588 - 16,497,752 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha617,920,483 - 17,969,286 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0616,577,996 - 16,626,815 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl616,578,012 - 16,628,609 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1616,380,418 - 16,429,206 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0616,306,905 - 16,355,670 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0616,596,937 - 16,645,742 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
FAM20C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1616,448,603 - 16,497,064 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl616,448,588 - 16,497,752 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha617,920,483 - 17,969,286 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0616,577,996 - 16,626,815 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl616,578,012 - 16,628,609 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1616,380,418 - 16,429,206 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0616,306,905 - 16,355,670 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0616,596,937 - 16,645,742 (-)NCBIUU_Cfam_GSD_1.0
FAM20C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387192,571 - 260,772 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7192,571 - 260,772 (+)EnsemblGRCh38hg38GRCh38
GRCh377192,571 - 300,738 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367288,052 - 304,059 (+)NCBINCBI36Build 36hg18NCBI36
Build 347288,195 - 304,059NCBI
Celera7211,215 - 273,622 (+)NCBICelera
Cytogenetic Map7p22.3NCBI
HuRef7203,619 - 219,084 (+)NCBIHuRef
HuRef7155,848 - 180,386 (+)NCBIHuRef
CHM1_17192,335 - 299,664 (+)NCBICHM1_1
T2T-CHM13v2.07293,238 - 360,993 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27303,573 - 364,808 (+)NCBI
Fam20c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395138,740,836 - 138,795,818 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5138,740,269 - 138,795,832 (+)EnsemblGRCm39 Ensembl
GRCm385138,755,081 - 138,810,063 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5138,754,514 - 138,810,077 (+)EnsemblGRCm38mm10GRCm38
MGSCv375139,231,035 - 139,286,017 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365139,008,742 - 139,063,705 (+)NCBIMGSCv36mm8
Celera5135,807,755 - 135,865,362 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map577.19NCBI
Fam20c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81220,940,654 - 20,999,072 (-)NCBIGRCr8
mRatBN7.21215,826,864 - 15,885,423 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1215,826,871 - 15,884,543 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1216,638,165 - 16,695,811 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01217,261,890 - 17,319,536 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01216,284,652 - 16,341,671 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01217,913,771 - 17,972,733 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1217,913,767 - 17,972,737 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01219,906,233 - 19,965,797 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41216,340,407 - 16,399,325 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11216,371,029 - 16,473,541 (-)NCBI
Celera1217,578,522 - 17,635,987 (-)NCBICelera
Cytogenetic Map12q11NCBI
Fam20c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554608,143,824 - 8,193,825 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554608,142,325 - 8,192,044 (+)NCBIChiLan1.0ChiLan1.0
FAM20C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v265,096,988 - 5,181,447 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1753,421,707 - 53,506,134 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07311,468 - 394,623 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17575,633 - 635,643 (+)NCBIpanpan1.1PanPan1.1panPan2
Fam20c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344144,360,748 - 144,413,468 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936754596,872 - 653,098 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936754596,878 - 649,585 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM20C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3163,421 - 200,459 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13159,107 - 200,462 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2389,974 - 94,208 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103246914
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12821,299,235 - 21,371,603 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2821,299,213 - 21,371,577 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666090190,813 - 259,923 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam20c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474025,984,091 - 26,032,649 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474025,984,642 - 26,032,089 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FAM20C
782 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 3 3 16 6 3 6 6 4 12 7 6
Low 2 2 6 3 2 8 3
Below cutoff

Sequence


RefSeq Acc Id: ENSCAFT00000017768   ⟹   ENSCAFP00000016449
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl616,448,588 - 16,497,752 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845017722   ⟹   ENSCAFP00845013802
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl616,578,012 - 16,628,609 (-)Ensembl
RefSeq Acc Id: XM_005621222   ⟹   XP_005621279
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1616,448,603 - 16,497,064 (-)NCBI
Dog10K_Boxer_Tasha617,920,483 - 17,969,286 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038478467   ⟹   XP_038334395
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1616,380,418 - 16,429,206 (-)NCBI
RefSeq Acc Id: XM_038539722   ⟹   XP_038395650
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0616,596,937 - 16,645,742 (-)NCBI
RefSeq Acc Id: XM_038603807   ⟹   XP_038459735
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0616,306,905 - 16,355,670 (-)NCBI
RefSeq Acc Id: XM_038668525   ⟹   XP_038524453
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0616,577,996 - 16,626,815 (-)NCBI
RefSeq Acc Id: XP_005621279   ⟸   XM_005621222
- UniProtKB: A0A8C0YRN5 (UniProtKB/TrEMBL),   A0A8C0L2S7 (UniProtKB/TrEMBL),   A0A8C0MBL5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000016449   ⟸   ENSCAFT00000017768
RefSeq Acc Id: XP_038334395   ⟸   XM_038478467
RefSeq Acc Id: XP_038459735   ⟸   XM_038603807
RefSeq Acc Id: XP_038524453   ⟸   XM_038668525
- UniProtKB: A0A8C0YRN5 (UniProtKB/TrEMBL),   A0A8C0L2S7 (UniProtKB/TrEMBL),   A0A8C0MBL5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038395650   ⟸   XM_038539722
- UniProtKB: A0A8C0L2S7 (UniProtKB/TrEMBL),   A0A8C0MBL5 (UniProtKB/TrEMBL),   A0A8C0YRN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845013802   ⟸   ENSCAFT00845017722
Protein Domains
FAM20 C-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000011179 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030004363 UniProtKB/TrEMBL
  ENSCAFG00040009031 UniProtKB/TrEMBL
  ENSCAFG00845010071 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000017768.5 UniProtKB/TrEMBL
  ENSCAFT00030008031.1 UniProtKB/TrEMBL
  ENSCAFT00030008093.1 UniProtKB/TrEMBL
  ENSCAFT00030008138.1 UniProtKB/TrEMBL
  ENSCAFT00040016907.1 UniProtKB/TrEMBL
  ENSCAFT00040017008.1 UniProtKB/TrEMBL
  ENSCAFT00040017085.1 UniProtKB/TrEMBL
  ENSCAFT00845017722.1 UniProtKB/TrEMBL
InterPro FAM20 UniProtKB/TrEMBL
  FAM20_C UniProtKB/TrEMBL
KEGG Report cfa:491596 UniProtKB/TrEMBL
NCBI Gene FAM20C ENTREZGENE
PANTHER EXTRACELLULAR SERINE/THREONINE PROTEIN KINASE FAM20C UniProtKB/TrEMBL
  PTHR12450 UniProtKB/TrEMBL
Pfam Fam20C UniProtKB/TrEMBL
PROSITE PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
UniProt A0A8C0L2S7 ENTREZGENE
  A0A8C0MBL5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0S2B5_CANLF UniProtKB/TrEMBL
  A0A8C0YRN5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0YRT6_CANLF UniProtKB/TrEMBL
  A0A8I3N8X3_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:40656 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-01-30 FAM20C  FAM20C golgi associated secretory pathway kinase    FAM20C, golgi associated secretory pathway kinase  Symbol and/or name change 5135510 APPROVED