LRP6 (LDL receptor related protein 6) - Rat Genome Database

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Gene: LRP6 (LDL receptor related protein 6) Canis lupus familiaris
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Symbol: LRP6
Name: LDL receptor related protein 6
RGD ID: 12139753
Description: ENCODES a protein that exhibits apolipoprotein binding (ortholog); toxin transmembrane transporter activity (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); axis elongation (ortholog); axis elongation involved in somitogenesis (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH autosomal dominant non-syndromic intellectual disability 6 (ortholog); autosomal dominant polycystic kidney disease (ortholog); coronary artery disease (ortholog); FOUND IN caveola (ortholog); early endosome (ortholog); Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: low-density lipoprotein receptor-related protein 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12734,003,334 - 34,166,334 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2734,003,539 - 34,161,437 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2712,280,309 - 12,442,407 (-)NCBI
ROS_Cfam_1.02734,310,832 - 34,473,060 (+)NCBI
ROS_Cfam_1.0 Ensembl2734,310,825 - 34,468,519 (+)Ensembl
UMICH_Zoey_3.12734,203,210 - 34,365,409 (+)NCBI
UNSW_CanFamBas_1.02734,153,217 - 34,315,758 (+)NCBI
UU_Cfam_GSD_1.02712,010,982 - 12,174,011 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
anterior/posterior pattern specification  (ISO)
axis elongation  (ISO)
axis elongation involved in somitogenesis  (ISO)
bone morphogenesis  (ISO)
bone remodeling  (ISO)
branching involved in mammary gland duct morphogenesis  (ISO)
canonical Wnt signaling pathway  (IBA,IEA,ISO)
canonical Wnt signaling pathway involved in cardiac neural crest cell differentiation involved in heart development  (ISO)
canonical Wnt signaling pathway involved in positive regulation of cardiac outflow tract cell proliferation  (ISO)
cell migration involved in gastrulation  (ISO)
cell-cell adhesion  (ISO)
cellular response to cholesterol  (IEA)
cerebellum morphogenesis  (ISO)
cerebral cortex cell migration  (ISO)
cerebral cortex development  (ISO)
chemical synaptic transmission  (IBA,ISO)
convergent extension  (ISO)
dopaminergic neuron differentiation  (ISO)
dorsal/ventral axis specification  (ISO)
embryonic camera-type eye morphogenesis  (ISO)
embryonic digit morphogenesis  (ISO)
embryonic forelimb morphogenesis  (ISO)
embryonic hindlimb morphogenesis  (ISO)
embryonic limb morphogenesis  (ISO)
embryonic pattern specification  (ISO)
embryonic retina morphogenesis in camera-type eye  (ISO)
endocytosis  (IEA)
external genitalia morphogenesis  (ISO)
face morphogenesis  (ISO)
fat cell differentiation  (ISO)
forebrain development  (ISO)
forebrain generation of neurons  (ISO)
forebrain radial glial cell differentiation  (ISO)
formation of radial glial scaffolds  (ISO)
gastrulation with mouth forming second  (ISO)
generation of neurons  (ISO)
heart looping  (ISO)
limb morphogenesis  (ISO)
mammary gland duct morphogenesis  (ISO)
mammary placode formation  (ISO)
mesenchymal cell proliferation  (ISO)
mesodermal cell migration  (ISO)
midbrain development  (ISO)
midbrain-hindbrain boundary development  (ISO)
morphogenesis of an epithelium  (ISO)
negative regulation of epithelial cell proliferation  (ISO)
negative regulation of fat cell differentiation  (ISO)
negative regulation of non-canonical Wnt signaling pathway  (ISO)
negative regulation of planar cell polarity pathway involved in cardiac muscle tissue morphogenesis  (ISO)
negative regulation of planar cell polarity pathway involved in cardiac right atrium morphogenesis  (ISO)
negative regulation of planar cell polarity pathway involved in neural tube closure  (ISO)
negative regulation of planar cell polarity pathway involved in outflow tract morphogenesis  (ISO)
negative regulation of planar cell polarity pathway involved in pericardium morphogenesis  (ISO)
negative regulation of planar cell polarity pathway involved in ventricular septum morphogenesis  (ISO)
negative regulation of protein kinase activity  (IEA)
negative regulation of protein phosphorylation  (IEA)
negative regulation of protein serine/threonine kinase activity  (IEA)
negative regulation of smooth muscle cell apoptotic process  (IEA)
neural crest cell differentiation  (IEA)
neural crest formation  (IEA)
neural tube closure  (ISO)
neural tube development  (ISO)
Norrin signaling pathway  (ISO)
odontogenesis of dentin-containing tooth  (ISO)
pericardium morphogenesis  (ISO)
planar cell polarity pathway involved in cardiac muscle tissue morphogenesis  (ISO)
planar cell polarity pathway involved in cardiac right atrium morphogenesis  (ISO)
planar cell polarity pathway involved in neural tube closure  (ISO)
planar cell polarity pathway involved in outflow tract morphogenesis  (ISO)
planar cell polarity pathway involved in pericardium morphogenesis  (ISO)
planar cell polarity pathway involved in ventricular septum morphogenesis  (ISO)
positive regulation of apoptotic process  (ISO)
positive regulation of bone resorption  (ISO)
positive regulation of cell cycle  (IEA)
positive regulation of cytosolic calcium ion concentration  (ISO)
positive regulation of DNA-binding transcription factor activity  (IBA,IEA)
positive regulation of mesenchymal cell proliferation  (ISO)
positive regulation of neuron projection development  (ISO)
positive regulation of ossification  (ISO)
positive regulation of stem cell proliferation  (ISO)
positive regulation of transcription by RNA polymerase II  (IEA)
positive regulation of transcription, DNA-templated  (IEA)
post-anal tail morphogenesis  (ISO)
primitive streak formation  (ISO)
protein localization to plasma membrane  (IEA)
receptor-mediated endocytosis involved in cholesterol transport  (IBA,ISO)
regulation of cell development  (ISO)
regulation of epithelial cell proliferation  (ISO)
regulation of transcription, DNA-templated  (ISO)
response to folic acid  (ISO)
response to peptide hormone  (ISO)
retina morphogenesis in camera-type eye  (ISO)
roof of mouth development  (ISO)
skeletal system morphogenesis  (ISO)
somitogenesis  (ISO)
stem cell proliferation  (ISO)
thalamus development  (ISO)
toxin transport  (IEA)
trachea cartilage morphogenesis  (ISO)
Wnt signaling pathway  (IEA)
Wnt signaling pathway involved in forebrain neuroblast division  (ISO)
Wnt signaling pathway involved in somitogenesis  (IBA,ISO)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
LRP6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12734,003,334 - 34,166,334 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2734,003,539 - 34,161,437 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2712,280,309 - 12,442,407 (-)NCBI
ROS_Cfam_1.02734,310,832 - 34,473,060 (+)NCBI
ROS_Cfam_1.0 Ensembl2734,310,825 - 34,468,519 (+)Ensembl
UMICH_Zoey_3.12734,203,210 - 34,365,409 (+)NCBI
UNSW_CanFamBas_1.02734,153,217 - 34,315,758 (+)NCBI
UU_Cfam_GSD_1.02712,010,982 - 12,174,011 (-)NCBI
LRP6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381212,116,025 - 12,267,044 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1212,116,025 - 12,267,044 (-)EnsemblGRCh38hg38GRCh38
GRCh371212,268,959 - 12,419,978 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361212,160,226 - 12,311,078 (-)NCBINCBI36hg18NCBI36
Build 341212,164,957 - 12,311,013NCBI
Celera1217,412,009 - 17,562,835 (-)NCBI
Cytogenetic Map12p13.2NCBI
HuRef1212,034,207 - 12,184,947 (-)NCBIHuRef
CHM1_11212,234,005 - 12,384,830 (-)NCBICHM1_1
Lrp6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396134,423,439 - 134,543,876 (-)NCBIGRCm39mm39
GRCm39 Ensembl6134,423,439 - 134,543,928 (-)Ensembl
GRCm386134,446,476 - 134,566,913 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6134,446,476 - 134,566,965 (-)EnsemblGRCm38mm10GRCm38
MGSCv376134,400,434 - 134,516,931 (-)NCBIGRCm37mm9NCBIm37
MGSCv366134,415,902 - 134,532,475 (-)NCBImm8
Celera6137,380,826 - 137,512,292 (-)NCBICelera
Cytogenetic Map6G1NCBI
cM Map665.37NCBI
Lrp6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24167,266,581 - 167,400,155 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl4167,270,353 - 167,400,497 (-)Ensembl
Rnor_6.04168,194,054 - 168,323,962 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4168,194,927 - 168,323,751 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04232,475,530 - 232,606,101 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44171,337,114 - 171,444,932 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14171,582,253 - 171,717,580 (-)NCBI
Celera4155,870,415 - 155,972,673 (-)NCBICelera
Cytogenetic Map4q43NCBI
Lrp6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554139,080,914 - 9,237,650 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554139,080,901 - 9,237,644 (-)NCBIChiLan1.0ChiLan1.0
LRP6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11212,508,108 - 12,658,074 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1212,508,108 - 12,657,973 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01212,121,411 - 12,288,590 (-)NCBIMhudiblu_PPA_v0panPan3
Lrp6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494595,337,435 - 95,417,648 (+)NCBI
SpeTri2.0NW_0049365875,065,200 - 5,143,029 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRP6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl560,149,028 - 60,314,689 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1560,149,041 - 60,318,719 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2563,564,404 - 63,674,461 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LRP6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11112,016,542 - 12,170,496 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1112,021,560 - 12,170,663 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606923,151,738 - 23,306,613 (+)NCBIVero_WHO_p1.0
Lrp6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475225,605,444 - 25,756,573 (+)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 16 3 3 8 10
Low 5 6 6 3 6 3 6 4 8 6
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000021188   ⟹   ENSCAFP00000019674
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2734,003,539 - 34,161,437 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000080809   ⟹   ENSCAFP00000060051
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2734,003,539 - 34,161,437 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000083408   ⟹   ENSCAFP00000054289
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2734,003,539 - 34,161,437 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000087005   ⟹   ENSCAFP00000050516
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2734,003,539 - 34,161,437 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000091654   ⟹   ENSCAFP00000046361
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2734,003,539 - 34,161,437 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845043033   ⟹   ENSCAFP00845033740
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2734,310,825 - 34,468,519 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845043287   ⟹   ENSCAFP00845033925
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2734,310,825 - 34,468,519 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845043529   ⟹   ENSCAFP00845034102
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2734,310,825 - 34,468,519 (+)Ensembl
RefSeq Acc Id: XM_014108554   ⟹   XP_013964029
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12734,003,334 - 34,166,334 (+)NCBI
Dog10K_Boxer_Tasha2712,280,309 - 12,442,407 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038438988   ⟹   XP_038294916
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02734,310,832 - 34,473,060 (+)NCBI
RefSeq Acc Id: XM_038513651   ⟹   XP_038369579
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12734,203,210 - 34,365,409 (+)NCBI
RefSeq Acc Id: XM_038576811   ⟹   XP_038432739
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02712,010,982 - 12,174,011 (-)NCBI
RefSeq Acc Id: XM_038641467   ⟹   XP_038497395
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02734,153,217 - 34,315,758 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_013964029   ⟸   XM_014108554
- UniProtKB: F1PCS0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000019674   ⟸   ENSCAFT00000021188
RefSeq Acc Id: ENSCAFP00000050516   ⟸   ENSCAFT00000087005
RefSeq Acc Id: ENSCAFP00000054289   ⟸   ENSCAFT00000083408
RefSeq Acc Id: ENSCAFP00000046361   ⟸   ENSCAFT00000091654
RefSeq Acc Id: ENSCAFP00000060051   ⟸   ENSCAFT00000080809
RefSeq Acc Id: XP_038369579   ⟸   XM_038513651
RefSeq Acc Id: XP_038497395   ⟸   XM_038641467
RefSeq Acc Id: XP_038294916   ⟸   XM_038438988
RefSeq Acc Id: XP_038432739   ⟸   XM_038576811
RefSeq Acc Id: ENSCAFP00845033925   ⟸   ENSCAFT00845043287
RefSeq Acc Id: ENSCAFP00845033740   ⟸   ENSCAFT00845043033
RefSeq Acc Id: ENSCAFP00845034102   ⟸   ENSCAFT00845043529
Protein Domains
EGF-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000013324 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030017287 UniProtKB/TrEMBL
  ENSCAFG00040023930 UniProtKB/TrEMBL
  ENSCAFG00845024356 Ensembl, ENTREZGENE
Ensembl Protein ENSCAFP00000019674 UniProtKB/TrEMBL
  ENSCAFP00000046361 UniProtKB/TrEMBL
  ENSCAFP00000050516 UniProtKB/TrEMBL
  ENSCAFP00000054289 UniProtKB/TrEMBL
  ENSCAFP00000060051 UniProtKB/TrEMBL
  ENSCAFP00030027826 UniProtKB/TrEMBL
  ENSCAFP00030027974 UniProtKB/TrEMBL
  ENSCAFP00030028139 UniProtKB/TrEMBL
  ENSCAFP00030028262 UniProtKB/TrEMBL
  ENSCAFP00030028429 UniProtKB/TrEMBL
  ENSCAFP00030028561 UniProtKB/TrEMBL
  ENSCAFP00040038926 UniProtKB/TrEMBL
  ENSCAFP00040039035 UniProtKB/TrEMBL
  ENSCAFP00040039077 UniProtKB/TrEMBL
  ENSCAFP00040039125 UniProtKB/TrEMBL
  ENSCAFP00040039194 UniProtKB/TrEMBL
  ENSCAFP00040039254 UniProtKB/TrEMBL
  ENSCAFP00845033740 ENTREZGENE
Ensembl Transcript ENSCAFT00000021188 UniProtKB/TrEMBL
  ENSCAFT00000080809 UniProtKB/TrEMBL
  ENSCAFT00000083408 UniProtKB/TrEMBL
  ENSCAFT00000087005 UniProtKB/TrEMBL
  ENSCAFT00000091654 UniProtKB/TrEMBL
  ENSCAFT00030031910 UniProtKB/TrEMBL
  ENSCAFT00030032082 UniProtKB/TrEMBL
  ENSCAFT00030032263 UniProtKB/TrEMBL
  ENSCAFT00030032400 UniProtKB/TrEMBL
  ENSCAFT00030032590 UniProtKB/TrEMBL
  ENSCAFT00030032738 UniProtKB/TrEMBL
  ENSCAFT00040044572 UniProtKB/TrEMBL
  ENSCAFT00040044693 UniProtKB/TrEMBL
  ENSCAFT00040044736 UniProtKB/TrEMBL
  ENSCAFT00040044789 UniProtKB/TrEMBL
  ENSCAFT00040044863 UniProtKB/TrEMBL
  ENSCAFT00040044929 UniProtKB/TrEMBL
  ENSCAFT00845043033 ENTREZGENE
Gene3D-CATH 2.120.10.30 UniProtKB/TrEMBL
  4.10.400.10 UniProtKB/TrEMBL
InterPro 6-blade_b-propeller_TolB-like UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  LDL_receptor-like_sf UniProtKB/TrEMBL
  LDLR_class-A_CS UniProtKB/TrEMBL
  LDLR_classB_rpt UniProtKB/TrEMBL
  LDrepeatLR_classA_rpt UniProtKB/TrEMBL
  LRP5/6 UniProtKB/TrEMBL
KEGG Report cfa:477692 UniProtKB/TrEMBL
NCBI Gene LRP6 ENTREZGENE
Pfam Ldl_recept_a UniProtKB/TrEMBL
  Ldl_recept_b UniProtKB/TrEMBL
PIRSF LDL_recpt-rel_p5/6 UniProtKB/TrEMBL
PRINTS LDLRECEPTOR UniProtKB/TrEMBL
PROSITE LDLRA_1 UniProtKB/TrEMBL
  LDLRA_2 UniProtKB/TrEMBL
  LDLRB UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  LDLa UniProtKB/TrEMBL
  SM00135 UniProtKB/TrEMBL
Superfamily-SCOP SSF57424 UniProtKB/TrEMBL
UniProt A0A5F4BYA0_CANLF UniProtKB/TrEMBL
  A0A5F4C899_CANLF UniProtKB/TrEMBL
  A0A5F4CNC1_CANLF UniProtKB/TrEMBL
  A0A5F4D052_CANLF UniProtKB/TrEMBL
  A0A8C0NL43_CANLF UniProtKB/TrEMBL
  A0A8C0NPY1_CANLF UniProtKB/TrEMBL
  A0A8C0NS55_CANLF UniProtKB/TrEMBL
  A0A8C0NWF3_CANLF UniProtKB/TrEMBL
  A0A8C0P105_CANLF UniProtKB/TrEMBL
  A0A8C0TQU0_CANLF UniProtKB/TrEMBL
  A0A8C0TQZ2_CANLF UniProtKB/TrEMBL
  F1PCS0 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:42778 ENTREZGENE