TNC (tenascin C) - Rat Genome Database

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Gene: TNC (tenascin C) Canis lupus familiaris
Analyze
Symbol: TNC
Name: tenascin C
RGD ID: 12130805
Description: ENCODES a protein that exhibits integrin binding (inferred); syndecan binding (inferred); INVOLVED IN bud outgrowth involved in lung branching (ortholog); cellular response to prostaglandin D stimulus (ortholog); cellular response to retinoic acid (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH allergic conjunctivitis (ortholog); asbestosis (ortholog); asthma (ortholog); FOUND IN perisynaptic extracellular matrix (ortholog); tenascin complex (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: tenascin; tenascin C (hexabrachion)
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11169,077,532 - 69,169,673 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1169,077,535 - 69,170,281 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1167,478,996 - 67,543,867 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01170,201,293 - 70,293,471 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1170,201,298 - 70,293,416 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11168,715,128 - 68,780,124 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01168,756,416 - 68,820,385 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01169,487,404 - 69,552,684 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:18039893   PMID:20571146   PMID:22301074  


Genomics

Comparative Map Data
TNC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11169,077,532 - 69,169,673 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1169,077,535 - 69,170,281 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1167,478,996 - 67,543,867 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01170,201,293 - 70,293,471 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1170,201,298 - 70,293,416 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11168,715,128 - 68,780,124 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01168,756,416 - 68,820,385 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01169,487,404 - 69,552,684 (-)NCBIUU_Cfam_GSD_1.0
TNC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389115,019,575 - 115,118,157 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9115,019,575 - 115,118,207 (-)EnsemblGRCh38hg38GRCh38
GRCh379117,781,854 - 117,880,436 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369116,822,626 - 116,920,307 (-)NCBINCBI36Build 36hg18NCBI36
Build 349114,862,366 - 114,959,993NCBI
Celera988,430,273 - 88,527,747 (-)NCBICelera
Cytogenetic Map9q33.1NCBI
HuRef987,386,539 - 87,484,951 (-)NCBIHuRef
CHM1_19117,928,574 - 118,027,020 (-)NCBICHM1_1
T2T-CHM13v2.09127,212,162 - 127,310,465 (-)NCBIT2T-CHM13v2.0
Tnc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39463,878,022 - 63,965,554 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl463,878,022 - 63,965,252 (-)EnsemblGRCm39 Ensembl
GRCm38463,959,785 - 64,047,015 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl463,959,785 - 64,047,015 (-)EnsemblGRCm38mm10GRCm38
MGSCv37463,620,819 - 63,681,760 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36463,446,149 - 63,507,087 (-)NCBIMGSCv36mm8
Celera462,620,454 - 62,681,423 (-)NCBICelera
Cytogenetic Map4C1NCBI
cM Map434.06NCBI
Tnc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8582,391,340 - 82,476,197 (-)NCBIGRCr8
mRatBN7.2577,375,851 - 77,460,712 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl577,375,851 - 77,460,624 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx579,772,326 - 79,857,198 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0581,589,535 - 81,674,415 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0581,565,002 - 81,649,884 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0579,789,686 - 79,874,555 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl579,789,671 - 79,874,671 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0583,890,952 - 83,950,462 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera576,306,295 - 76,365,869 (-)NCBICelera
Cytogenetic Map5q24NCBI
Tnc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541912,569,547 - 12,662,958 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541912,569,620 - 12,662,897 (+)NCBIChiLan1.0ChiLan1.0
TNC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21124,252,394 - 24,349,633 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1924,254,811 - 24,351,994 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0986,125,672 - 86,222,804 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19114,486,778 - 114,584,297 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9114,486,778 - 114,584,299 (-)Ensemblpanpan1.1panPan2
Tnc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947184,403,727 - 184,487,858 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364874,172,886 - 4,233,126 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364874,172,263 - 4,256,780 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1255,533,238 - 255,630,376 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11255,533,235 - 255,630,381 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21286,732,751 - 286,813,962 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap1q21.1-q21.3NCBI
TNC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11224,457,616 - 24,556,194 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1224,457,738 - 24,556,451 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603518,276,825 - 18,375,675 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tnc
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476020,044,826 - 20,137,616 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476020,044,900 - 20,137,260 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TNC
1584 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 4 1 1 6 1 5 4
Low 1 1 19 5 5 1 2 8 1 6 1
Below cutoff 4 2 4 4 7 5

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001195149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005626424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014117664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022424918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022424919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022424920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022424921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022424922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022424923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022424924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038680966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038680967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038680968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038680969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038680970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038680971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038680972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038680973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038680974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038680975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038680976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038680977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038680978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038680979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN377885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN378483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN380214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000005551   ⟹   ENSCAFP00000005140
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1169,077,535 - 69,170,281 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000047096   ⟹   ENSCAFP00000036170
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1169,077,535 - 69,170,281 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000071179   ⟹   ENSCAFP00000047029
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1169,077,535 - 69,170,281 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000071452   ⟹   ENSCAFP00000056787
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1169,077,535 - 69,170,281 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000074598   ⟹   ENSCAFP00000057930
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1169,077,535 - 69,170,281 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000081005   ⟹   ENSCAFP00000046094
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1169,077,535 - 69,170,281 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000082332   ⟹   ENSCAFP00000061921
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1169,077,535 - 69,170,281 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000085043   ⟹   ENSCAFP00000060081
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1169,077,535 - 69,170,281 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000088210   ⟹   ENSCAFP00000056857
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1169,077,535 - 69,170,281 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000092428   ⟹   ENSCAFP00000052736
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1169,077,535 - 69,170,281 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845018837   ⟹   ENSCAFP00845014708
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1170,201,298 - 70,293,416 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845019032   ⟹   ENSCAFP00845014869
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1170,201,298 - 70,293,416 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845019345   ⟹   ENSCAFP00845015125
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1170,201,298 - 70,293,416 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845019542   ⟹   ENSCAFP00845015280
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1170,201,298 - 70,293,416 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845019842   ⟹   ENSCAFP00845015535
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1170,201,298 - 70,293,416 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845019976   ⟹   ENSCAFP00845015647
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1170,201,298 - 70,293,416 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845020137   ⟹   ENSCAFP00845015785
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1170,201,298 - 70,293,416 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845020337   ⟹   ENSCAFP00845015940
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1170,201,298 - 70,293,416 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845020437   ⟹   ENSCAFP00845016018
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1170,201,298 - 70,293,416 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845020520   ⟹   ENSCAFP00845016089
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1170,201,298 - 70,293,416 (-)Ensembl
RefSeq Acc Id: NM_001195149   ⟹   NP_001182078
RefSeq Status: VALIDATED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11169,077,535 - 69,141,315 (-)NCBI
Dog10K_Boxer_Tasha1167,478,996 - 67,543,867 (-)NCBI
ROS_Cfam_1.01170,201,296 - 70,265,052 (-)NCBI
UMICH_Zoey_3.11168,715,128 - 68,780,124 (-)NCBI
UNSW_CanFamBas_1.01168,756,416 - 68,820,385 (-)NCBI
UU_Cfam_GSD_1.01169,487,404 - 69,552,684 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038680966   ⟹   XP_038536894
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01170,201,293 - 70,293,471 (-)NCBI
RefSeq Acc Id: XM_038680967   ⟹   XP_038536895
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01170,201,293 - 70,293,471 (-)NCBI
RefSeq Acc Id: XM_038680968   ⟹   XP_038536896
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01170,201,293 - 70,293,471 (-)NCBI
RefSeq Acc Id: XM_038680969   ⟹   XP_038536897
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01170,201,293 - 70,293,471 (-)NCBI
RefSeq Acc Id: XM_038680970   ⟹   XP_038536898
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01170,201,293 - 70,293,471 (-)NCBI
RefSeq Acc Id: XM_038680971   ⟹   XP_038536899
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01170,201,293 - 70,293,470 (-)NCBI
RefSeq Acc Id: XM_038680972   ⟹   XP_038536900
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01170,201,293 - 70,293,469 (-)NCBI
RefSeq Acc Id: XM_038680973   ⟹   XP_038536901
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01170,201,293 - 70,293,468 (-)NCBI
RefSeq Acc Id: XM_038680974   ⟹   XP_038536902
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01170,201,293 - 70,293,469 (-)NCBI
RefSeq Acc Id: XM_038680975   ⟹   XP_038536903
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01170,201,293 - 70,293,469 (-)NCBI
RefSeq Acc Id: XM_038680976   ⟹   XP_038536904
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01170,201,293 - 70,293,467 (-)NCBI
RefSeq Acc Id: XM_038680977   ⟹   XP_038536905
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01170,201,293 - 70,293,468 (-)NCBI
RefSeq Acc Id: XM_038680978   ⟹   XP_038536906
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01170,201,293 - 70,293,467 (-)NCBI
RefSeq Acc Id: XM_038680979   ⟹   XP_038536907
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01170,201,293 - 70,293,464 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001182078 (Get FASTA)   NCBI Sequence Viewer  
  XP_038536894 (Get FASTA)   NCBI Sequence Viewer  
  XP_038536895 (Get FASTA)   NCBI Sequence Viewer  
  XP_038536896 (Get FASTA)   NCBI Sequence Viewer  
  XP_038536897 (Get FASTA)   NCBI Sequence Viewer  
  XP_038536898 (Get FASTA)   NCBI Sequence Viewer  
  XP_038536899 (Get FASTA)   NCBI Sequence Viewer  
  XP_038536900 (Get FASTA)   NCBI Sequence Viewer  
  XP_038536901 (Get FASTA)   NCBI Sequence Viewer  
  XP_038536902 (Get FASTA)   NCBI Sequence Viewer  
  XP_038536903 (Get FASTA)   NCBI Sequence Viewer  
  XP_038536904 (Get FASTA)   NCBI Sequence Viewer  
  XP_038536905 (Get FASTA)   NCBI Sequence Viewer  
  XP_038536906 (Get FASTA)   NCBI Sequence Viewer  
  XP_038536907 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000005140.4
  ENSCAFP00000036170.1
  ENSCAFP00000046094.1
  ENSCAFP00000047029.1
  ENSCAFP00000052736.2
  ENSCAFP00000056787.1
  ENSCAFP00000056857.1
  ENSCAFP00000057930.2
  ENSCAFP00000060081.1
  ENSCAFP00000061921.1
  ENSCAFP00040012431.1
  ENSCAFP00040012466.1
  ENSCAFP00040012502.1
  ENSCAFP00040012523.1
  ENSCAFP00040012541.1
  ENSCAFP00845014708
  ENSCAFP00845014708.1
  ENSCAFP00845014869.1
  ENSCAFP00845015125
  ENSCAFP00845015125.1
  ENSCAFP00845015280
  ENSCAFP00845015280.1
  ENSCAFP00845015535
  ENSCAFP00845015535.1
  ENSCAFP00845015647
  ENSCAFP00845015647.1
  ENSCAFP00845015785
  ENSCAFP00845015785.1
  ENSCAFP00845015940.1
  ENSCAFP00845016018
  ENSCAFP00845016018.1
  ENSCAFP00845016089
  ENSCAFP00845016089.1
RefSeq Acc Id: NP_001182078   ⟸   NM_001195149
- Peptide Label: precursor
- UniProtKB: A0A8I3NF05 (UniProtKB/TrEMBL),   A0A8P0N6C4 (UniProtKB/TrEMBL),   A0A8C0S0B7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000005140   ⟸   ENSCAFT00000005551
RefSeq Acc Id: ENSCAFP00000056857   ⟸   ENSCAFT00000088210
RefSeq Acc Id: ENSCAFP00000057930   ⟸   ENSCAFT00000074598
RefSeq Acc Id: ENSCAFP00000036170   ⟸   ENSCAFT00000047096
RefSeq Acc Id: ENSCAFP00000061921   ⟸   ENSCAFT00000082332
RefSeq Acc Id: ENSCAFP00000052736   ⟸   ENSCAFT00000092428
RefSeq Acc Id: ENSCAFP00000060081   ⟸   ENSCAFT00000085043
RefSeq Acc Id: ENSCAFP00000056787   ⟸   ENSCAFT00000071452
RefSeq Acc Id: ENSCAFP00000047029   ⟸   ENSCAFT00000071179
RefSeq Acc Id: ENSCAFP00000046094   ⟸   ENSCAFT00000081005
RefSeq Acc Id: XP_038536896   ⟸   XM_038680968
- Peptide Label: isoform X3
- UniProtKB: A0A8I3RW59 (UniProtKB/TrEMBL),   A0A8P0T8Y3 (UniProtKB/TrEMBL),   A0A8I3NSD6 (UniProtKB/TrEMBL),   A0A8P0T564 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038536897   ⟸   XM_038680969
- Peptide Label: isoform X4
- UniProtKB: A0A8C0K0T0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038536895   ⟸   XM_038680967
- Peptide Label: isoform X2
- UniProtKB: A0A8I3NJF5 (UniProtKB/TrEMBL),   A0A8P0PAV3 (UniProtKB/TrEMBL),   A0A8C0QW02 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038536898   ⟸   XM_038680970
- Peptide Label: isoform X5
- UniProtKB: A0A8I3NJZ1 (UniProtKB/TrEMBL),   A0A8P0P622 (UniProtKB/TrEMBL),   A0A8C0S0B7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038536894   ⟸   XM_038680966
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NFV4 (UniProtKB/TrEMBL),   A0A8P0NNH6 (UniProtKB/TrEMBL),   A0A8I3NSD6 (UniProtKB/TrEMBL),   A0A8P0T564 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038536899   ⟸   XM_038680971
- Peptide Label: isoform X6
- UniProtKB: A0A8I3RWE2 (UniProtKB/TrEMBL),   A0A8P0TA02 (UniProtKB/TrEMBL),   A0A8I3NSD6 (UniProtKB/TrEMBL),   A0A8P0T564 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038536903   ⟸   XM_038680975
- Peptide Label: isoform X10
- UniProtKB: A0A8C0JZF4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038536902   ⟸   XM_038680974
- Peptide Label: isoform X9
- UniProtKB: A0A8C0S0B7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038536900   ⟸   XM_038680972
- Peptide Label: isoform X7
- UniProtKB: A0A8I3NF05 (UniProtKB/TrEMBL),   A0A8P0N6C4 (UniProtKB/TrEMBL),   A0A8C0S0B7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038536905   ⟸   XM_038680977
- Peptide Label: isoform X12
- UniProtKB: A0A8C0QFG8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038536901   ⟸   XM_038680973
- Peptide Label: isoform X8
- UniProtKB: A0A8I3N9I4 (UniProtKB/TrEMBL),   A0A8P0SZZ7 (UniProtKB/TrEMBL),   A0A8C0S0B7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038536906   ⟸   XM_038680978
- Peptide Label: isoform X13
- UniProtKB: A0A8C0QKQ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038536904   ⟸   XM_038680976
- Peptide Label: isoform X11
- UniProtKB: A0A8I3NDY9 (UniProtKB/TrEMBL),   A0A8P0NWD3 (UniProtKB/TrEMBL),   A0A8C0JZC9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038536907   ⟸   XM_038680979
- Peptide Label: isoform X14
- UniProtKB: A0A8C0QKQ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845015280   ⟸   ENSCAFT00845019542
RefSeq Acc Id: ENSCAFP00845016018   ⟸   ENSCAFT00845020437
RefSeq Acc Id: ENSCAFP00845016089   ⟸   ENSCAFT00845020520
RefSeq Acc Id: ENSCAFP00845015535   ⟸   ENSCAFT00845019842
RefSeq Acc Id: ENSCAFP00845015785   ⟸   ENSCAFT00845020137
RefSeq Acc Id: ENSCAFP00845015647   ⟸   ENSCAFT00845019976
RefSeq Acc Id: ENSCAFP00845014708   ⟸   ENSCAFT00845018837
RefSeq Acc Id: ENSCAFP00845015125   ⟸   ENSCAFT00845019345
RefSeq Acc Id: ENSCAFP00845014869   ⟸   ENSCAFT00845019032
RefSeq Acc Id: ENSCAFP00845015940   ⟸   ENSCAFT00845020337
Promoters
RGD ID:13685313
Promoter ID:EPDNEW_C3381
Type:multiple initiation site
Name:TNC_1
Description:tenascin C
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11169,169,604 - 69,169,664EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000003426 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00040007604 UniProtKB/TrEMBL
  ENSCAFG00845010582 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000005551.5 UniProtKB/TrEMBL
  ENSCAFT00000047096.4 UniProtKB/TrEMBL
  ENSCAFT00000071179.2 UniProtKB/TrEMBL
  ENSCAFT00000071452.2 UniProtKB/TrEMBL
  ENSCAFT00000074598.2 UniProtKB/TrEMBL
  ENSCAFT00000081005.2 UniProtKB/TrEMBL
  ENSCAFT00000082332.2 UniProtKB/TrEMBL
  ENSCAFT00000085043.2 UniProtKB/TrEMBL
  ENSCAFT00000088210.2 UniProtKB/TrEMBL
  ENSCAFT00000092428.2 UniProtKB/TrEMBL
  ENSCAFT00040014367.1 UniProtKB/TrEMBL
  ENSCAFT00040014408.1 UniProtKB/TrEMBL
  ENSCAFT00040014455.1 UniProtKB/TrEMBL
  ENSCAFT00040014477.1 UniProtKB/TrEMBL
  ENSCAFT00040014502.1 UniProtKB/TrEMBL
  ENSCAFT00845018837 ENTREZGENE
  ENSCAFT00845018837.1 UniProtKB/TrEMBL
  ENSCAFT00845019032.1 UniProtKB/TrEMBL
  ENSCAFT00845019345 ENTREZGENE
  ENSCAFT00845019345.1 UniProtKB/TrEMBL
  ENSCAFT00845019542 ENTREZGENE
  ENSCAFT00845019542.1 UniProtKB/TrEMBL
  ENSCAFT00845019842 ENTREZGENE
  ENSCAFT00845019842.1 UniProtKB/TrEMBL
  ENSCAFT00845019976 ENTREZGENE
  ENSCAFT00845019976.1 UniProtKB/TrEMBL
  ENSCAFT00845020137 ENTREZGENE
  ENSCAFT00845020137.1 UniProtKB/TrEMBL
  ENSCAFT00845020337.1 UniProtKB/TrEMBL
  ENSCAFT00845020437 ENTREZGENE
  ENSCAFT00845020437.1 UniProtKB/TrEMBL
  ENSCAFT00845020520 ENTREZGENE
  ENSCAFT00845020520.1 UniProtKB/TrEMBL
Gene3D-CATH 2.20.25.10 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
  3.90.215.10 UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro EGF-like_dom UniProtKB/TrEMBL
  EGF_extracell UniProtKB/TrEMBL
  EGF_Tenascin UniProtKB/TrEMBL
  Fibrinogen-like_C UniProtKB/TrEMBL
  Fibrinogen_a/b/g_C_1 UniProtKB/TrEMBL
  Fibrinogen_a/b/g_C_dom UniProtKB/TrEMBL
  FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
KEGG Report cfa:481689 UniProtKB/TrEMBL
NCBI Gene TNC ENTREZGENE
PANTHER PTHR46708:SF1 UniProtKB/TrEMBL
  TENASCIN UniProtKB/TrEMBL
Pfam EGF_2 UniProtKB/TrEMBL
  EGF_Tenascin UniProtKB/TrEMBL
  Fibrinogen_C UniProtKB/TrEMBL
  fn3 UniProtKB/TrEMBL
PROSITE EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  FIBRINOGEN_C_2 UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  FBG UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
Superfamily-SCOP SSF49265 UniProtKB/TrEMBL
  SSF56496 UniProtKB/TrEMBL
UniProt A0A8C0JZC9 ENTREZGENE
  A0A8C0JZF4 ENTREZGENE
  A0A8C0K0T0 ENTREZGENE
  A0A8C0QFG8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0QFK8_CANLF UniProtKB/TrEMBL
  A0A8C0QKQ6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0QW02 ENTREZGENE
  A0A8C0S041_CANLF UniProtKB/TrEMBL
  A0A8C0S0B7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3N9I4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NDY9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NF05 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NFV4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NJF5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NJN0_CANLF UniProtKB/TrEMBL
  A0A8I3NJZ1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NSD6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3RW59 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3RWE2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0N6C4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NNH6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NWD3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0P622 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0P938_CANLF UniProtKB/TrEMBL
  A0A8P0PAV3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SZZ7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0T564 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0T8Y3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0TA02 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:47646 ENTREZGENE