BSG (basigin) - Rat Genome Database

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Gene: BSG (basigin) Canis lupus familiaris
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Symbol: BSG
Name: basigin
RGD ID: 12353267
Description: ENCODES a protein that exhibits signaling receptor activity (ortholog); virus receptor activity (ortholog); INVOLVED IN decidualization (ortholog); embryo implantation (ortholog); endothelial tube morphogenesis (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); breast ductal carcinoma (ortholog); cervical cancer (ortholog); FOUND IN acrosomal membrane (ortholog); endosome (ortholog); integral component of plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: basigin (Ok blood group)
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12057,942,703 - 57,951,089 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2057,943,276 - 57,951,061 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2057,745,480 - 57,753,845 (-)NCBI
ROS_Cfam_1.02058,686,165 - 58,694,560 (-)NCBI
UMICH_Zoey_3.12057,739,806 - 57,748,184 (-)NCBI
UNSW_CanFamBas_1.02058,219,731 - 58,228,095 (-)NCBI
UU_Cfam_GSD_1.02058,422,924 - 58,431,329 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
BSG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12057,942,703 - 57,951,089 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2057,943,276 - 57,951,061 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2057,745,480 - 57,753,845 (-)NCBI
ROS_Cfam_1.02058,686,165 - 58,694,560 (-)NCBI
UMICH_Zoey_3.12057,739,806 - 57,748,184 (-)NCBI
UNSW_CanFamBas_1.02058,219,731 - 58,228,095 (-)NCBI
UU_Cfam_GSD_1.02058,422,924 - 58,431,329 (-)NCBI
BSG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl19571,277 - 583,494 (+)EnsemblGRCh38hg38GRCh38
GRCh3819571,283 - 583,493 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3719571,283 - 583,493 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3619522,325 - 534,493 (+)NCBINCBI36hg18NCBI36
Build 3419522,324 - 534,492NCBI
Celera19234,501 - 246,669 (-)NCBI
Cytogenetic Map19p13.3NCBI
HuRef19342,018 - 354,031 (+)NCBIHuRef
CHM1_119570,866 - 583,082 (+)NCBICHM1_1
Bsg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391079,540,192 - 79,547,813 (+)NCBIGRCm39mm39
GRCm39 Ensembl1079,540,325 - 79,547,803 (+)Ensembl
GRCm381079,704,358 - 79,711,979 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1079,704,491 - 79,711,969 (+)EnsemblGRCm38mm10GRCm38
MGSCv371079,167,103 - 79,174,724 (+)NCBIGRCm37mm9NCBIm37
MGSCv361079,107,629 - 79,115,022 (+)NCBImm8
Celera1080,718,673 - 80,726,294 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
Bsg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.279,993,170 - 10,000,387 (-)NCBI
Rnor_6.0 Ensembl712,875,537 - 12,882,753 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0712,875,536 - 12,882,753 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0713,044,572 - 13,051,789 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4711,507,914 - 11,515,132 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1711,507,913 - 11,515,056 (-)NCBI
Celera78,166,570 - 8,173,787 (-)NCBICelera
Cytogenetic Map7q11NCBI
Bsg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554957,148,806 - 7,156,296 (-)NCBIChiLan1.0ChiLan1.0
Bsg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118217,644,988 - 217,653,120 (-)NCBI
SpeTri2.0NW_004936588181,688 - 189,795 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BSG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1277,735,586 - 77,743,451 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
BSG
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.16309,579 - 320,209 (+)NCBI
ChlSab1.1 Ensembl6309,506 - 321,785 (+)Ensembl
Vero_WHO_p1.0NW_0236660818,757,164 - 8,768,688 (-)NCBI
Bsg
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248287,913,297 - 7,920,891 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 8 10 6
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000031352   ⟹   ENSCAFP00000029180
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2057,943,276 - 57,951,061 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000082041   ⟹   ENSCAFP00000055305
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2057,943,276 - 57,946,416 (-)Ensembl
RefSeq Acc Id: XM_022407320   ⟹   XP_022263028
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12057,942,703 - 57,946,380 (-)NCBI
Dog10K_Boxer_Tasha2057,745,480 - 57,749,162 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038429385   ⟹   XP_038285313
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02058,686,165 - 58,689,849 (-)NCBI
RefSeq Acc Id: XM_038429386   ⟹   XP_038285314
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02058,686,165 - 58,694,560 (-)NCBI
RefSeq Acc Id: XM_038504911   ⟹   XP_038360839
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12057,739,806 - 57,743,488 (-)NCBI
RefSeq Acc Id: XM_038504912   ⟹   XP_038360840
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12057,739,806 - 57,748,184 (-)NCBI
RefSeq Acc Id: XM_038568068   ⟹   XP_038423996
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02058,422,924 - 58,426,602 (-)NCBI
RefSeq Acc Id: XM_038568069   ⟹   XP_038423997
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02058,422,924 - 58,431,329 (-)NCBI
RefSeq Acc Id: XM_038632176   ⟹   XP_038488104
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02058,219,731 - 58,223,414 (-)NCBI
RefSeq Acc Id: XM_038632177   ⟹   XP_038488105
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02058,219,731 - 58,228,095 (-)NCBI
RefSeq Acc Id: XM_533964   ⟹   XP_533964
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12057,942,703 - 57,951,089 (-)NCBI
Dog10K_Boxer_Tasha2057,745,480 - 57,753,845 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_533964   ⟸   XM_533964
- Peptide Label: isoform X2
- UniProtKB: E2QZT4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022263028   ⟸   XM_022407320
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCAFP00000029180   ⟸   ENSCAFT00000031352
RefSeq Acc Id: ENSCAFP00000055305   ⟸   ENSCAFT00000082041
RefSeq Acc Id: XP_038360840   ⟸   XM_038504912
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038360839   ⟸   XM_038504911
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038488105   ⟸   XM_038632177
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038488104   ⟸   XM_038632176
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038285314   ⟸   XM_038429386
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038285313   ⟸   XM_038429385
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038423997   ⟸   XM_038568069
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038423996   ⟸   XM_038568068
- Peptide Label: isoform X1
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000019717 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000029180 ENTREZGENE, UniProtKB/TrEMBL
  ENSCAFP00000055305 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000031352 UniProtKB/TrEMBL
  ENSCAFT00000082041 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Basigin UniProtKB/TrEMBL
  Basigin-like UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
NCBI Gene BSG ENTREZGENE
PANTHER PTHR10075 UniProtKB/TrEMBL
  PTHR10075:SF12 UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A5F4CR91_CANLF UniProtKB/TrEMBL
  E2QZT4 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:54577 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-01 BSG  basigin    basigin (Ok blood group)  Symbol and/or name change 5135510 APPROVED