BSG (basigin) - Rat Genome Database

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Gene: BSG (basigin) Canis lupus familiaris
Analyze
Symbol: BSG
Name: basigin
RGD ID: 12353267
Description: ENCODES a protein that exhibits signaling receptor activity (ortholog); virus receptor activity (ortholog); INVOLVED IN decidualization (ortholog); embryo implantation (ortholog); endothelial tube morphogenesis (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH adrenocortical carcinoma (ortholog); amyotrophic lateral sclerosis type 1 (ortholog); breast ductal carcinoma (ortholog); FOUND IN acrosomal membrane (ortholog); endosome (ortholog); intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: basigin (Ok blood group)
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12057,942,703 - 57,951,089 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2057,943,276 - 57,951,061 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2057,745,480 - 57,753,845 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02058,686,165 - 58,694,560 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2058,686,156 - 58,698,895 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12057,739,806 - 57,748,184 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02058,219,731 - 58,228,095 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02058,422,924 - 58,431,329 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
BSG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12057,942,703 - 57,951,089 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2057,943,276 - 57,951,061 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2057,745,480 - 57,753,845 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02058,686,165 - 58,694,560 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2058,686,156 - 58,698,895 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12057,739,806 - 57,748,184 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02058,219,731 - 58,228,095 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02058,422,924 - 58,431,329 (-)NCBIUU_Cfam_GSD_1.0
BSG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3819571,283 - 583,493 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl19571,277 - 583,494 (+)EnsemblGRCh38hg38GRCh38
GRCh3719571,283 - 583,493 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3619522,325 - 534,493 (+)NCBINCBI36Build 36hg18NCBI36
Build 3419522,324 - 534,492NCBI
Celera19234,501 - 246,669 (-)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef19342,018 - 354,031 (+)NCBIHuRef
CHM1_119570,866 - 583,082 (+)NCBICHM1_1
T2T-CHM13v2.019525,174 - 537,384 (+)NCBIT2T-CHM13v2.0
Bsg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391079,540,192 - 79,547,813 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1079,540,325 - 79,547,803 (+)EnsemblGRCm39 Ensembl
GRCm381079,704,358 - 79,711,979 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1079,704,491 - 79,711,969 (+)EnsemblGRCm38mm10GRCm38
MGSCv371079,167,103 - 79,174,724 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361079,107,629 - 79,115,022 (+)NCBIMGSCv36mm8
Celera1080,718,673 - 80,726,294 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
Bsg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8710,643,788 - 10,651,005 (-)NCBIGRCr8
mRatBN7.279,993,170 - 10,000,387 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl79,993,170 - 10,000,387 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx712,874,130 - 12,881,349 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0714,752,211 - 14,759,430 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0712,611,541 - 12,618,758 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0712,875,536 - 12,882,753 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl712,875,537 - 12,882,753 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0713,044,572 - 13,051,789 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4711,507,914 - 11,515,132 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1711,507,913 - 11,515,056 (-)NCBI
Celera78,166,570 - 8,173,787 (-)NCBICelera
Cytogenetic Map7q11NCBI
Bsg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554957,148,806 - 7,156,296 (-)NCBIChiLan1.0ChiLan1.0
BSG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2204,897,258 - 4,908,073 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1194,136,030 - 4,146,843 (+)NCBINHGRI_mPanPan1
PanPan1.1 Ensembl19539,815 - 551,456 (+)Ensemblpanpan1.1panPan2
Bsg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118217,644,988 - 217,653,120 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936588181,576 - 189,287 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936588181,688 - 189,795 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BSG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1277,735,586 - 77,743,451 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
BSG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.16309,579 - 320,209 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl6309,506 - 321,785 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660818,757,164 - 8,768,688 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bsg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248287,913,099 - 7,920,804 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248287,913,297 - 7,920,891 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in BSG
143 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 8 10 6
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSCAFT00000031352   ⟹   ENSCAFP00000029180
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2057,943,276 - 57,951,061 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000082041   ⟹   ENSCAFP00000055305
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2057,943,276 - 57,946,416 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845027033   ⟹   ENSCAFP00845021272
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2058,686,156 - 58,698,895 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845027055   ⟹   ENSCAFP00845021291
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2058,686,156 - 58,689,885 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845027081   ⟹   ENSCAFP00845021311
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2058,686,178 - 58,694,551 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845027086   ⟹   ENSCAFP00845021315
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2058,686,188 - 58,694,572 (-)Ensembl
RefSeq Acc Id: XM_022407320   ⟹   XP_022263028
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12057,942,703 - 57,946,380 (-)NCBI
Dog10K_Boxer_Tasha2057,745,480 - 57,749,162 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038429385   ⟹   XP_038285313
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02058,686,165 - 58,689,849 (-)NCBI
RefSeq Acc Id: XM_038429386   ⟹   XP_038285314
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02058,686,165 - 58,694,560 (-)NCBI
RefSeq Acc Id: XM_038504911   ⟹   XP_038360839
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12057,739,806 - 57,743,488 (-)NCBI
RefSeq Acc Id: XM_038504912   ⟹   XP_038360840
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12057,739,806 - 57,748,184 (-)NCBI
RefSeq Acc Id: XM_038568068   ⟹   XP_038423996
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02058,422,924 - 58,426,602 (-)NCBI
RefSeq Acc Id: XM_038568069   ⟹   XP_038423997
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02058,422,924 - 58,431,329 (-)NCBI
RefSeq Acc Id: XM_038632176   ⟹   XP_038488104
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02058,219,731 - 58,223,414 (-)NCBI
RefSeq Acc Id: XM_038632177   ⟹   XP_038488105
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02058,219,731 - 58,228,095 (-)NCBI
RefSeq Acc Id: XM_533964   ⟹   XP_533964
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12057,942,703 - 57,951,089 (-)NCBI
Dog10K_Boxer_Tasha2057,745,480 - 57,753,845 (-)NCBI
Sequence:
RefSeq Acc Id: XP_533964   ⟸   XM_533964
- Peptide Label: isoform X2
- UniProtKB: A0A8C0NZ06 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022263028   ⟸   XM_022407320
- Peptide Label: isoform X1
- UniProtKB: A0A8C0YVS3 (UniProtKB/TrEMBL),   A0A8I3NKF4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000029180   ⟸   ENSCAFT00000031352
RefSeq Acc Id: ENSCAFP00000055305   ⟸   ENSCAFT00000082041
RefSeq Acc Id: XP_038360840   ⟸   XM_038504912
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038360839   ⟸   XM_038504911
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038488105   ⟸   XM_038632177
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038488104   ⟸   XM_038632176
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038285314   ⟸   XM_038429386
- Peptide Label: isoform X2
- UniProtKB: A0A8C0NZ06 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038285313   ⟸   XM_038429385
- Peptide Label: isoform X1
- UniProtKB: A0A8C0YVS3 (UniProtKB/TrEMBL),   A0A8I3NKF4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038423997   ⟸   XM_038568069
- Peptide Label: isoform X2
- UniProtKB: A0A8C0NZ06 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038423996   ⟸   XM_038568068
- Peptide Label: isoform X1
- UniProtKB: A0A8C0YVS3 (UniProtKB/TrEMBL),   A0A8I3NKF4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845021272   ⟸   ENSCAFT00845027033
RefSeq Acc Id: ENSCAFP00845021315   ⟸   ENSCAFT00845027086
RefSeq Acc Id: ENSCAFP00845021291   ⟸   ENSCAFT00845027055
RefSeq Acc Id: ENSCAFP00845021311   ⟸   ENSCAFT00845027081
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000019717 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030020680 UniProtKB/TrEMBL
  ENSCAFG00040011505 UniProtKB/TrEMBL
  ENSCAFG00845015138 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000031352.5 UniProtKB/TrEMBL
  ENSCAFT00000082041.2 UniProtKB/TrEMBL
  ENSCAFT00000100936.1 UniProtKB/TrEMBL
  ENSCAFT00000105467.1 UniProtKB/TrEMBL
  ENSCAFT00030037986.1 UniProtKB/TrEMBL
  ENSCAFT00040021242.1 UniProtKB/TrEMBL
  ENSCAFT00845027033.1 UniProtKB/TrEMBL
  ENSCAFT00845027055 ENTREZGENE
  ENSCAFT00845027055.1 UniProtKB/TrEMBL
  ENSCAFT00845027081 ENTREZGENE
  ENSCAFT00845027081.1 UniProtKB/TrEMBL
  ENSCAFT00845027086.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
NCBI Gene BSG ENTREZGENE
PANTHER IMMUNOGLOBULIN-LIKE CELL ADHESION MOLECULE FAMILY UniProtKB/TrEMBL
  NEPHRIN UniProtKB/TrEMBL
Pfam Ig_3 UniProtKB/TrEMBL
PRINTS BASIGIN UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A8C0NZ06 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0YVS3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NKF4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NZI7_CANLF UniProtKB/TrEMBL
  A0A8I3P0G0_CANLF UniProtKB/TrEMBL
  A0A8I3P4K7_CANLF UniProtKB/TrEMBL
  A0A8P0NKK2_CANLF UniProtKB/TrEMBL
  A0A8P0PI77_CANLF UniProtKB/TrEMBL
  A0A8P0PQH6_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:54577 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-01 BSG  basigin    basigin (Ok blood group)  Symbol and/or name change 5135510 APPROVED