DICER1 (dicer 1, ribonuclease III) - Rat Genome Database

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Gene: DICER1 (dicer 1, ribonuclease III) Canis lupus familiaris
Analyze
Symbol: DICER1
Name: dicer 1, ribonuclease III
RGD ID: 12348047
Description: ENCODES a protein that exhibits miRNA binding (ortholog); pre-miRNA binding (ortholog); INVOLVED IN angiogenesis (ortholog); branching morphogenesis of an epithelial tube (ortholog); cardiac muscle cell development (ortholog); PARTICIPATES IN microRNA pathway; ASSOCIATED WITH autosomal recessive nonsyndromic deafness 103 (ortholog); autosomal recessive nonsyndromic deafness 111 (ortholog); breast cancer (ortholog); FOUND IN axon (ortholog); dendrite (ortholog); endoplasmic reticulum-Golgi intermediate compartment (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Dicer1, Dcr-1 homolog; endoribonuclease Dicer
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1863,970,245 - 64,029,438 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl863,972,027 - 64,019,879 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha863,546,706 - 63,619,316 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0864,236,992 - 64,309,618 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl864,238,043 - 64,309,589 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1863,912,041 - 63,984,637 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0863,970,646 - 64,043,228 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0864,295,524 - 64,368,151 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
angiogenesis  (ISO)
apoptotic DNA fragmentation  (IEA)
branching morphogenesis of an epithelial tube  (ISO)
cardiac muscle cell development  (ISO)
cardiac neural crest cell development involved in outflow tract morphogenesis  (ISO)
cartilage development  (ISO)
cell population proliferation  (ISO)
cellular component organization  (IEA)
cellular response to glucose stimulus  (ISO)
cellular response to hydrogen peroxide  (ISO)
cellular response to hypoxia  (ISO)
cellular response to tumor necrosis factor  (ISO)
cerebral cortex development  (ISO)
defense response to virus  (ISO)
digestive tract development  (ISO)
embryonic hindlimb morphogenesis  (ISO)
embryonic limb morphogenesis  (ISO)
epidermis morphogenesis  (ISO)
ganglion development  (ISO)
gene expression  (ISO)
global gene silencing by mRNA cleavage  (IEA)
hair follicle cell proliferation  (ISO)
hair follicle development  (ISO)
hair follicle morphogenesis  (ISO)
inner ear receptor cell development  (ISO)
intestinal epithelial cell development  (ISO)
lung development  (ISO)
meiotic spindle organization  (ISO)
miRNA processing  (IEA,ISO)
mRNA stabilization  (ISO)
multicellular organism growth  (ISO)
myoblast differentiation involved in skeletal muscle regeneration  (ISO)
negative regulation of gene expression  (IEA,ISO)
negative regulation of glial cell proliferation  (ISO)
negative regulation of Schwann cell proliferation  (ISO)
negative regulation of transcription by RNA polymerase II  (ISO)
negative regulation of tumor necrosis factor production  (IEA,ISO)
negative regulation of tumor necrosis factor-mediated signaling pathway  (IEA,ISO)
nerve development  (ISO)
neuron projection morphogenesis  (ISO)
olfactory bulb interneuron differentiation  (ISO)
pericentric heterochromatin formation  (ISO)
peripheral nervous system myelin formation  (ISO)
positive regulation of collagen biosynthetic process  (ISO)
positive regulation of endothelial cell migration  (ISO)
positive regulation of endothelial cell-matrix adhesion via fibronectin  (ISO)
positive regulation of establishment of endothelial barrier  (ISO)
positive regulation of gene expression  (ISO)
positive regulation of hepatic stellate cell proliferation  (ISO)
positive regulation of miRNA metabolic process  (ISO)
positive regulation of myelination  (ISO)
positive regulation of Schwann cell differentiation  (ISO)
positive regulation of transcription by RNA polymerase II  (ISO)
positive regulation of vascular endothelial cell proliferation  (ISO)
post-embryonic development  (ISO)
pre-miRNA processing  (IEA,ISO)
regulation of cell cycle  (ISO)
regulation of enamel mineralization  (ISO)
regulation of epithelial cell differentiation  (ISO)
regulation of gene expression  (ISO)
regulation of inflammatory response  (ISO)
regulation of miRNA metabolic process  (ISO)
regulation of muscle cell apoptotic process  (ISO)
regulation of myelination  (ISO)
regulation of neurogenesis  (ISO)
regulation of neuron differentiation  (ISO)
regulation of odontogenesis of dentin-containing tooth  (ISO)
regulation of oligodendrocyte differentiation  (ISO)
regulation of protein phosphorylation  (ISO)
regulation of regulatory T cell differentiation  (ISO)
regulation of RNA metabolic process  (ISO)
regulation of stem cell differentiation  (ISO)
regulation of viral genome replication  (ISO)
regulatory ncRNA-mediated gene silencing  (IEA)
regulatory ncRNA-mediated post-transcriptional gene silencing  (ISO)
reproductive structure development  (ISO)
RISC complex assembly  (IEA)
RNA processing  (IEA,ISO)
siRNA processing  (IEA,ISO)
spermatogonial cell division  (ISO)
spinal cord motor neuron differentiation  (ISO)
spindle assembly  (ISO)
spleen development  (ISO)
stem cell population maintenance  (ISO)
trophectodermal cell proliferation  (ISO)
zygote asymmetric cell division  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
DICER1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1863,970,245 - 64,029,438 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl863,972,027 - 64,019,879 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha863,546,706 - 63,619,316 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0864,236,992 - 64,309,618 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl864,238,043 - 64,309,589 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1863,912,041 - 63,984,637 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0863,970,646 - 64,043,228 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0864,295,524 - 64,368,151 (-)NCBIUU_Cfam_GSD_1.0
DICER1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381495,086,228 - 95,158,010 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1495,086,228 - 95,158,010 (-)EnsemblGRCh38hg38GRCh38
GRCh371495,552,565 - 95,624,347 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361494,622,319 - 94,693,512 (-)NCBINCBI36Build 36hg18NCBI36
Build 341494,622,318 - 94,693,512NCBI
Celera1475,608,684 - 75,679,876 (-)NCBICelera
Cytogenetic Map14q32.13NCBI
HuRef1475,736,521 - 75,807,615 (-)NCBIHuRef
CHM1_11495,490,915 - 95,561,989 (-)NCBICHM1_1
T2T-CHM13v2.01489,316,445 - 89,388,228 (-)NCBIT2T-CHM13v2.0
Dicer1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912104,654,001 - 104,718,331 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12104,654,001 - 104,718,211 (-)EnsemblGRCm39 Ensembl
GRCm3812104,687,740 - 104,751,968 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12104,687,742 - 104,751,952 (-)EnsemblGRCm38mm10GRCm38
MGSCv3712105,925,952 - 105,990,162 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612105,092,486 - 105,153,002 (-)NCBIMGSCv36mm8
Celera12105,918,245 - 105,982,441 (-)NCBICelera
Cytogenetic Map12ENCBI
cM Map1254.83NCBI
Dicer1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86129,392,298 - 129,457,252 (-)NCBIGRCr8
mRatBN7.26123,627,529 - 123,692,278 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6123,631,250 - 123,693,965 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.06128,388,084 - 128,453,234 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6128,388,053 - 128,434,183 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06137,586,335 - 137,633,706 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46128,777,468 - 128,838,780 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16128,781,378 - 128,842,495 (-)NCBI
Celera6121,106,680 - 121,167,957 (-)NCBICelera
Cytogenetic Map6q32NCBI
Dicer1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543817,382,493 - 17,431,797 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543817,374,899 - 17,431,599 (+)NCBIChiLan1.0ChiLan1.0
DICER1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21596,234,748 - 96,307,196 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11495,451,254 - 95,523,061 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01475,709,029 - 75,780,779 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11495,036,385 - 95,107,940 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1495,036,385 - 95,107,940 (-)Ensemblpanpan1.1panPan2
Dicer1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864010,443,874 - 10,504,962 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936846532,972 - 575,689 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936846528,768 - 584,599 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DICER1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7116,365,802 - 116,411,224 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17116,361,630 - 116,436,471 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27123,581,725 - 123,652,553 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DICER1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12472,915,550 - 72,986,658 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2472,915,499 - 72,963,006 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605360,107,379 - 60,178,341 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dicer1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247347,608,273 - 7,651,819 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247347,604,049 - 7,681,481 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in DICER1
495 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 4 15 6 6 11 10 5
Low 1 5 7 6 6 6 1 8 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_014116140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022422353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038484133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038484134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038484135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038484136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038484137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038484138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038545642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038545643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038545644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038545645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038545646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038545647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038594567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038594568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038594577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038594587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038594595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038609740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038609741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038609742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038609743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038609744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038609745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038674550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038674551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038674552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038674553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038674554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038674555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_863433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000028082   ⟹   ENSCAFP00000026123
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl863,974,616 - 64,019,879 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000061717   ⟹   ENSCAFP00000044959
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl863,972,027 - 64,016,167 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000072663   ⟹   ENSCAFP00000054964
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl863,972,027 - 64,016,167 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845005700   ⟹   ENSCAFP00845004520
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl864,238,043 - 64,309,589 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845005730   ⟹   ENSCAFP00845004543
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl864,239,509 - 64,296,162 (-)Ensembl
RefSeq Acc Id: XM_022422353   ⟹   XP_022278061
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1863,970,245 - 64,016,123 (-)NCBI
Dog10K_Boxer_Tasha863,546,706 - 63,592,581 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038484133   ⟹   XP_038340061
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1863,916,412 - 63,984,637 (-)NCBI
RefSeq Acc Id: XM_038484134   ⟹   XP_038340062
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1863,916,412 - 63,984,633 (-)NCBI
RefSeq Acc Id: XM_038484135   ⟹   XP_038340063
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1863,916,412 - 63,984,637 (-)NCBI
RefSeq Acc Id: XM_038484136   ⟹   XP_038340064
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1863,916,412 - 63,962,628 (-)NCBI
RefSeq Acc Id: XM_038484137   ⟹   XP_038340065
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1863,916,412 - 63,984,623 (-)NCBI
RefSeq Acc Id: XM_038484138   ⟹   XP_038340066
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1863,912,041 - 63,957,909 (-)NCBI
RefSeq Acc Id: XM_038545642   ⟹   XP_038401570
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0864,299,896 - 64,368,151 (-)NCBI
RefSeq Acc Id: XM_038545643   ⟹   XP_038401571
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0864,299,896 - 64,368,146 (-)NCBI
RefSeq Acc Id: XM_038545644   ⟹   XP_038401572
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0864,299,896 - 64,368,151 (-)NCBI
RefSeq Acc Id: XM_038545645   ⟹   XP_038401573
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0864,299,896 - 64,346,125 (-)NCBI
RefSeq Acc Id: XM_038545646   ⟹   XP_038401574
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0864,299,896 - 64,368,137 (-)NCBI
RefSeq Acc Id: XM_038545647   ⟹   XP_038401575
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0864,295,524 - 64,341,406 (-)NCBI
RefSeq Acc Id: XM_038594567   ⟹   XP_038450495
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha863,551,077 - 63,619,316 (-)NCBI
RefSeq Acc Id: XM_038594568   ⟹   XP_038450496
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha863,551,077 - 63,619,311 (-)NCBI
RefSeq Acc Id: XM_038594577   ⟹   XP_038450505
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha863,551,077 - 63,619,316 (-)NCBI
RefSeq Acc Id: XM_038594587   ⟹   XP_038450515
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha863,551,077 - 63,597,300 (-)NCBI
RefSeq Acc Id: XM_038594595   ⟹   XP_038450523
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha863,551,077 - 63,619,302 (-)NCBI
RefSeq Acc Id: XM_038609740   ⟹   XP_038465668
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0863,975,011 - 64,043,228 (-)NCBI
RefSeq Acc Id: XM_038609741   ⟹   XP_038465669
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0863,975,011 - 64,043,223 (-)NCBI
RefSeq Acc Id: XM_038609742   ⟹   XP_038465670
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0863,975,011 - 64,043,228 (-)NCBI
RefSeq Acc Id: XM_038609743   ⟹   XP_038465671
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0863,975,011 - 64,021,229 (-)NCBI
RefSeq Acc Id: XM_038609744   ⟹   XP_038465672
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0863,975,011 - 64,043,214 (-)NCBI
RefSeq Acc Id: XM_038609745   ⟹   XP_038465673
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0863,970,646 - 64,016,510 (-)NCBI
RefSeq Acc Id: XM_038674550   ⟹   XP_038530478
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0864,241,361 - 64,309,618 (-)NCBI
RefSeq Acc Id: XM_038674551   ⟹   XP_038530479
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0864,241,361 - 64,309,613 (-)NCBI
RefSeq Acc Id: XM_038674552   ⟹   XP_038530480
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0864,241,361 - 64,309,618 (-)NCBI
RefSeq Acc Id: XM_038674553   ⟹   XP_038530481
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0864,241,361 - 64,287,596 (-)NCBI
RefSeq Acc Id: XM_038674554   ⟹   XP_038530482
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0864,241,361 - 64,309,604 (-)NCBI
RefSeq Acc Id: XM_038674555   ⟹   XP_038530483
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0864,236,992 - 64,282,877 (-)NCBI
Protein Sequences
Protein RefSeqs XP_022278061 (Get FASTA)   NCBI Sequence Viewer  
  XP_038340061 (Get FASTA)   NCBI Sequence Viewer  
  XP_038340062 (Get FASTA)   NCBI Sequence Viewer  
  XP_038340063 (Get FASTA)   NCBI Sequence Viewer  
  XP_038340064 (Get FASTA)   NCBI Sequence Viewer  
  XP_038340065 (Get FASTA)   NCBI Sequence Viewer  
  XP_038340066 (Get FASTA)   NCBI Sequence Viewer  
  XP_038401570 (Get FASTA)   NCBI Sequence Viewer  
  XP_038401571 (Get FASTA)   NCBI Sequence Viewer  
  XP_038401572 (Get FASTA)   NCBI Sequence Viewer  
  XP_038401573 (Get FASTA)   NCBI Sequence Viewer  
  XP_038401574 (Get FASTA)   NCBI Sequence Viewer  
  XP_038401575 (Get FASTA)   NCBI Sequence Viewer  
  XP_038450495 (Get FASTA)   NCBI Sequence Viewer  
  XP_038450496 (Get FASTA)   NCBI Sequence Viewer  
  XP_038450505 (Get FASTA)   NCBI Sequence Viewer  
  XP_038450515 (Get FASTA)   NCBI Sequence Viewer  
  XP_038450523 (Get FASTA)   NCBI Sequence Viewer  
  XP_038465668 (Get FASTA)   NCBI Sequence Viewer  
  XP_038465669 (Get FASTA)   NCBI Sequence Viewer  
  XP_038465670 (Get FASTA)   NCBI Sequence Viewer  
  XP_038465671 (Get FASTA)   NCBI Sequence Viewer  
  XP_038465672 (Get FASTA)   NCBI Sequence Viewer  
  XP_038465673 (Get FASTA)   NCBI Sequence Viewer  
  XP_038530478 (Get FASTA)   NCBI Sequence Viewer  
  XP_038530479 (Get FASTA)   NCBI Sequence Viewer  
  XP_038530480 (Get FASTA)   NCBI Sequence Viewer  
  XP_038530481 (Get FASTA)   NCBI Sequence Viewer  
  XP_038530482 (Get FASTA)   NCBI Sequence Viewer  
  XP_038530483 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000026123.4
  ENSCAFP00000044959.2
  ENSCAFP00030015397.1
  ENSCAFP00030015608.1
  ENSCAFP00030015797.1
  ENSCAFP00030015941.1
  ENSCAFP00040006892.1
  ENSCAFP00040006924.1
  ENSCAFP00845004520
  ENSCAFP00845004520.1
  ENSCAFP00845004543.1
RefSeq Acc Id: XP_022278061   ⟸   XM_022422353
- UniProtKB: A0A8C0KLY0 (UniProtKB/TrEMBL),   A0A8C0Q4K8 (UniProtKB/TrEMBL),   A0A8I3MJK7 (UniProtKB/TrEMBL),   A0A8C0N078 (UniProtKB/TrEMBL),   A0A8I3MQF0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000026123   ⟸   ENSCAFT00000028082
RefSeq Acc Id: ENSCAFP00000054964   ⟸   ENSCAFT00000072663
RefSeq Acc Id: ENSCAFP00000044959   ⟸   ENSCAFT00000061717
RefSeq Acc Id: XP_038340066   ⟸   XM_038484138
RefSeq Acc Id: XP_038340061   ⟸   XM_038484133
RefSeq Acc Id: XP_038340063   ⟸   XM_038484135
RefSeq Acc Id: XP_038340062   ⟸   XM_038484134
RefSeq Acc Id: XP_038340065   ⟸   XM_038484137
RefSeq Acc Id: XP_038340064   ⟸   XM_038484136
RefSeq Acc Id: XP_038465673   ⟸   XM_038609745
RefSeq Acc Id: XP_038465668   ⟸   XM_038609740
RefSeq Acc Id: XP_038465670   ⟸   XM_038609742
RefSeq Acc Id: XP_038465669   ⟸   XM_038609741
RefSeq Acc Id: XP_038465672   ⟸   XM_038609744
RefSeq Acc Id: XP_038465671   ⟸   XM_038609743
RefSeq Acc Id: XP_038530483   ⟸   XM_038674555
- UniProtKB: A0A8C0KLY0 (UniProtKB/TrEMBL),   A0A8C0Q4K8 (UniProtKB/TrEMBL),   A0A8I3MJK7 (UniProtKB/TrEMBL),   A0A8C0N078 (UniProtKB/TrEMBL),   A0A8I3MQF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038530478   ⟸   XM_038674550
- UniProtKB: A0A8C0KLY0 (UniProtKB/TrEMBL),   A0A8C0Q4K8 (UniProtKB/TrEMBL),   A0A8I3MJK7 (UniProtKB/TrEMBL),   A0A8C0N078 (UniProtKB/TrEMBL),   A0A8I3MQF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038530480   ⟸   XM_038674552
- UniProtKB: A0A8C0KLY0 (UniProtKB/TrEMBL),   A0A8C0Q4K8 (UniProtKB/TrEMBL),   A0A8I3MJK7 (UniProtKB/TrEMBL),   A0A8C0N078 (UniProtKB/TrEMBL),   A0A8I3MQF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038530479   ⟸   XM_038674551
- UniProtKB: A0A8C0KLY0 (UniProtKB/TrEMBL),   A0A8C0Q4K8 (UniProtKB/TrEMBL),   A0A8I3MJK7 (UniProtKB/TrEMBL),   A0A8C0N078 (UniProtKB/TrEMBL),   A0A8I3MQF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038530482   ⟸   XM_038674554
- UniProtKB: A0A8C0KLY0 (UniProtKB/TrEMBL),   A0A8C0Q4K8 (UniProtKB/TrEMBL),   A0A8I3MJK7 (UniProtKB/TrEMBL),   A0A8C0N078 (UniProtKB/TrEMBL),   A0A8I3MQF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038530481   ⟸   XM_038674553
- UniProtKB: A0A8C0KLY0 (UniProtKB/TrEMBL),   A0A8C0Q4K8 (UniProtKB/TrEMBL),   A0A8I3MJK7 (UniProtKB/TrEMBL),   A0A8C0N078 (UniProtKB/TrEMBL),   A0A8I3MQF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038450495   ⟸   XM_038594567
- UniProtKB: A0A8C0KLY0 (UniProtKB/TrEMBL),   A0A8C0Q4K8 (UniProtKB/TrEMBL),   A0A8I3MJK7 (UniProtKB/TrEMBL),   A0A8C0N078 (UniProtKB/TrEMBL),   A0A8I3MQF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038450505   ⟸   XM_038594577
- UniProtKB: A0A8C0KLY0 (UniProtKB/TrEMBL),   A0A8C0Q4K8 (UniProtKB/TrEMBL),   A0A8I3MJK7 (UniProtKB/TrEMBL),   A0A8C0N078 (UniProtKB/TrEMBL),   A0A8I3MQF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038450496   ⟸   XM_038594568
- UniProtKB: A0A8C0KLY0 (UniProtKB/TrEMBL),   A0A8C0Q4K8 (UniProtKB/TrEMBL),   A0A8I3MJK7 (UniProtKB/TrEMBL),   A0A8C0N078 (UniProtKB/TrEMBL),   A0A8I3MQF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038450523   ⟸   XM_038594595
- UniProtKB: A0A8C0KLY0 (UniProtKB/TrEMBL),   A0A8C0Q4K8 (UniProtKB/TrEMBL),   A0A8I3MJK7 (UniProtKB/TrEMBL),   A0A8C0N078 (UniProtKB/TrEMBL),   A0A8I3MQF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038450515   ⟸   XM_038594587
- UniProtKB: A0A8C0KLY0 (UniProtKB/TrEMBL),   A0A8C0Q4K8 (UniProtKB/TrEMBL),   A0A8I3MJK7 (UniProtKB/TrEMBL),   A0A8C0N078 (UniProtKB/TrEMBL),   A0A8I3MQF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038401575   ⟸   XM_038545647
- UniProtKB: A0A8C0KLY0 (UniProtKB/TrEMBL),   A0A8C0N078 (UniProtKB/TrEMBL),   A0A8C0Q4K8 (UniProtKB/TrEMBL),   A0A8I3MJK7 (UniProtKB/TrEMBL),   A0A8I3MQF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038401570   ⟸   XM_038545642
- UniProtKB: A0A8C0KLY0 (UniProtKB/TrEMBL),   A0A8C0N078 (UniProtKB/TrEMBL),   A0A8C0Q4K8 (UniProtKB/TrEMBL),   A0A8I3MJK7 (UniProtKB/TrEMBL),   A0A8I3MQF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038401572   ⟸   XM_038545644
- UniProtKB: A0A8C0KLY0 (UniProtKB/TrEMBL),   A0A8C0N078 (UniProtKB/TrEMBL),   A0A8C0Q4K8 (UniProtKB/TrEMBL),   A0A8I3MJK7 (UniProtKB/TrEMBL),   A0A8I3MQF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038401571   ⟸   XM_038545643
- UniProtKB: A0A8C0KLY0 (UniProtKB/TrEMBL),   A0A8C0N078 (UniProtKB/TrEMBL),   A0A8C0Q4K8 (UniProtKB/TrEMBL),   A0A8I3MJK7 (UniProtKB/TrEMBL),   A0A8I3MQF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038401574   ⟸   XM_038545646
- UniProtKB: A0A8C0KLY0 (UniProtKB/TrEMBL),   A0A8C0N078 (UniProtKB/TrEMBL),   A0A8C0Q4K8 (UniProtKB/TrEMBL),   A0A8I3MJK7 (UniProtKB/TrEMBL),   A0A8I3MQF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038401573   ⟸   XM_038545645
- UniProtKB: A0A8C0KLY0 (UniProtKB/TrEMBL),   A0A8C0N078 (UniProtKB/TrEMBL),   A0A8C0Q4K8 (UniProtKB/TrEMBL),   A0A8I3MJK7 (UniProtKB/TrEMBL),   A0A8I3MQF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845004520   ⟸   ENSCAFT00845005700
RefSeq Acc Id: ENSCAFP00845004543   ⟸   ENSCAFT00845005730

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000017701 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030009542 UniProtKB/TrEMBL
  ENSCAFG00040004133 UniProtKB/TrEMBL
  ENSCAFG00845003230 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000028082.5 UniProtKB/TrEMBL
  ENSCAFT00000061717.2 UniProtKB/TrEMBL
  ENSCAFT00030017630.1 UniProtKB/TrEMBL
  ENSCAFT00030017872.1 UniProtKB/TrEMBL
  ENSCAFT00030018087.1 UniProtKB/TrEMBL
  ENSCAFT00030018258.1 UniProtKB/TrEMBL
  ENSCAFT00040007906.1 UniProtKB/TrEMBL
  ENSCAFT00040007950.1 UniProtKB/TrEMBL
  ENSCAFT00845005700 ENTREZGENE
  ENSCAFT00845005700.1 UniProtKB/TrEMBL
  ENSCAFT00845005730.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1520.10 UniProtKB/TrEMBL
  3.30.160.20 UniProtKB/TrEMBL
  3.30.160.380 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
  paz domain UniProtKB/TrEMBL
InterPro DEAD/DEAH_box_helicase_dom UniProtKB/TrEMBL
  Dicer_dimer_sf UniProtKB/TrEMBL
  Dicer_dimerisation_dom UniProtKB/TrEMBL
  DICER_DSRM UniProtKB/TrEMBL
  Dicer_PBD UniProtKB/TrEMBL
  Dicer_platform UniProtKB/TrEMBL
  dsRBD_dom UniProtKB/TrEMBL
  Helicase_ATP-bd UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  PAZ_dom UniProtKB/TrEMBL
  PAZ_dom_sf UniProtKB/TrEMBL
  RNase_III_dom UniProtKB/TrEMBL
  RNase_III_sf UniProtKB/TrEMBL
NCBI Gene DICER1 ENTREZGENE
PANTHER DICER-RELATED UniProtKB/TrEMBL
  ENDORIBONUCLEASE DICER UniProtKB/TrEMBL
Pfam DEAD UniProtKB/TrEMBL
  Dicer_dimer UniProtKB/TrEMBL
  Dicer_dsRBD UniProtKB/TrEMBL
  Dicer_PBD UniProtKB/TrEMBL
  Dicer_platform UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  PAZ UniProtKB/TrEMBL
  Ribonuclease_3 UniProtKB/TrEMBL
PROSITE DICER_DSRBF UniProtKB/TrEMBL
  DS_RBD UniProtKB/TrEMBL
  HELICASE_ATP_BIND_1 UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/TrEMBL
  PAZ UniProtKB/TrEMBL
  RNASE_3_1 UniProtKB/TrEMBL
  RNASE_3_2 UniProtKB/TrEMBL
SMART DEXDc UniProtKB/TrEMBL
  DSRM UniProtKB/TrEMBL
  HELICc UniProtKB/TrEMBL
  PAZ UniProtKB/TrEMBL
  RIBOc UniProtKB/TrEMBL
Superfamily-SCOP dsRNA-binding domain-like UniProtKB/TrEMBL
  SSF101690 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
  SSF69065 UniProtKB/TrEMBL
UniProt A0A8C0KLY0 ENTREZGENE
  A0A8C0MX58_CANLF UniProtKB/TrEMBL
  A0A8C0N078 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0Q4K8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0QGF7_CANLF UniProtKB/TrEMBL
  A0A8C0RGR7_CANLF UniProtKB/TrEMBL
  A0A8I3MJK7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MQF0 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:39958 ENTREZGENE