KLK4 (kallikrein related peptidase 4) - Rat Genome Database

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Gene: KLK4 (kallikrein related peptidase 4) Canis lupus familiaris
Analyze
Symbol: KLK4
Name: kallikrein related peptidase 4
RGD ID: 12117701
Description: ENCODES a protein that exhibits hydrolase activity (inferred); peptidase activity (inferred); serine-type endopeptidase activity (inferred); INVOLVED IN amelogenesis (ortholog); extracellular matrix disassembly (ortholog); protein catabolic process (ortholog); ASSOCIATED WITH amelogenesis imperfecta (ortholog); amelogenesis imperfecta type 2A1 (ortholog); breast cancer (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: kallikrein-4
RGD Orthologs
Human
Mouse
Rat
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11105,950,948 - 105,955,464 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1105,951,691 - 106,007,581 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1105,526,312 - 105,529,783 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01106,462,891 - 106,466,451 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11106,134,079 - 106,137,554 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01105,775,605 - 105,779,075 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01106,571,164 - 106,574,633 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
KLK4Dogbreast cancer severityISOKLK4 (Homo sapiens)9068941 RGDPMID:19190825 and REF_RGD_ID:2314852
KLK4Dogbreast cancer disease_progressionISOKLK4 (Homo sapiens)9068941mRNA and protein:increased expression:breastRGDPMID:18687310 and REF_RGD_ID:2314853
KLK4Dogovarian cancer severityISOKLK4 (Homo sapiens)9068941 RGDPMID:15262123 and REF_RGD_ID:2314856
KLK4Dogprostate cancer  ISOKLK4 (Homo sapiens)9068941 RGDPMID:12370833 and REF_RGD_ID:2314857
KLK4Dogprostate cancer  ISOKLK4 (Homo sapiens)9068941protein:increased expression:prostate glandRGDPMID:17545602 and REF_RGD_ID:2314854
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
KLK4Dogamelogenesis imperfecta  ISOKLK4 (Homo sapiens)8554872ClinVar Annotator: match by term: Amelogenesis imperfectaClinVar 
KLK4Dogamelogenesis imperfecta type 2A1  ISOKLK4 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:15235027 more ...
KLK4Doggenetic disease  ISOKLK4 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868
KLK4Dogmale infertility  ISOKLK4 (Homo sapiens)8554872ClinVar Annotator: match by term: Male infertilityClinVarPMID:25741868
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
KLK4Dogamelogenesis imperfecta type 2A1  ISOKLK4 (Homo sapiens)7240710 OMIM 


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
KLK4Dogamelogenesis involved_inISOKLK4 (Homo sapiens)9068941 PMID:15235027UniProtPMID:15235027
KLK4Dogamelogenesis acts_upstream_of_or_withinISOMGI:43553469068941 PMID:19578120 more ...MGIPMID:19578120 more ...
KLK4Dogextracellular matrix disassembly acts_upstream_of_or_withinISOMGI:43553469068941 PMID:22243248MGIPMID:22243248
KLK4Dogprotein catabolic process acts_upstream_of_or_withinISOMGI:43553469068941 PMID:22243248MGIPMID:22243248
KLK4Dogproteolysis involved_inIEAUniProtKB-KW:KW-0645150520179 UniProtGO_REF:0000043
KLK4Dogproteolysis involved_inIEAInterPro:IPR001254 and InterPro:IPR018114150520179 InterProGO_REF:0000002

Molecular Function

  

PMID:20853168   PMID:22301074   PMID:30032202  



KLK4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11105,950,948 - 105,955,464 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1105,951,691 - 106,007,581 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1105,526,312 - 105,529,783 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01106,462,891 - 106,466,451 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11106,134,079 - 106,137,554 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01105,775,605 - 105,779,075 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01106,571,164 - 106,574,633 (+)NCBIUU_Cfam_GSD_1.0
KLK4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381950,906,351 - 50,911,395 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1950,906,351 - 50,911,395 (-)EnsemblGRCh38hg38GRCh38
GRCh371951,409,607 - 51,414,651 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361956,101,420 - 56,105,806 (-)NCBINCBI36Build 36hg18NCBI36
Build 341956,101,419 - 56,105,806NCBI
Celera1948,460,680 - 48,464,998 (-)NCBICelera
Cytogenetic Map19q13.41NCBI
HuRef1947,742,948 - 47,747,264 (-)NCBIHuRef
CHM1_11951,411,402 - 51,415,787 (-)NCBICHM1_1
T2T-CHM13v2.01953,994,435 - 53,999,407 (-)NCBIT2T-CHM13v2.0
Klk4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39743,530,584 - 43,535,228 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl743,530,584 - 43,535,228 (+)EnsemblGRCm39 Ensembl
GRCm38743,881,160 - 43,885,804 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl743,881,160 - 43,885,804 (+)EnsemblGRCm38mm10GRCm38
MGSCv37751,136,542 - 51,141,174 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36743,749,214 - 43,753,846 (+)NCBIMGSCv36mm8
Celera739,349,912 - 39,354,544 (+)NCBICelera
Cytogenetic Map7B3NCBI
cM Map728.35NCBI
Klk4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81103,480,731 - 103,485,963 (+)NCBIGRCr8
mRatBN7.2194,344,195 - 94,349,425 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl194,344,195 - 94,349,424 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx199,730,033 - 99,734,406 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01108,202,660 - 108,207,031 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01101,492,287 - 101,496,632 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0199,828,944 - 99,834,642 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl199,829,351 - 99,834,216 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01100,897,206 - 100,902,435 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4194,321,663 - 94,327,488 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1194,399,773 - 94,405,599 (+)NCBI
Celera188,612,777 - 88,617,038 (+)NCBICelera
Cytogenetic Map1q22NCBI
KLK4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22056,976,183 - 56,980,802 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11958,896,711 - 58,901,306 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01947,849,158 - 47,876,522 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11956,739,394 - 56,768,169 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1956,764,073 - 56,768,169 (-)Ensemblpanpan1.1panPan2
Klk4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934922,707,186 - 22,711,100 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936889583,302 - 586,412 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936889583,259 - 586,412 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KLK4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl655,589,999 - 55,594,294 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1655,589,997 - 55,617,514 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2651,488,847 - 51,498,931 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KLK4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1643,921,920 - 43,935,224 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl643,922,052 - 43,934,253 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607323,952,102 - 23,956,462 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Klk4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248323,828,679 - 3,831,767 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248323,828,676 - 3,832,025 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in KLK4
88 total Variants


Assembly: CanFam3.1

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
1 105953743 105953744 G T snv Yellowstone Wolf (SRS661496), Wolf (WO002_732), Wolf (WO001_895), Wolf (WO003_636) View more Information
1 105954139 105954140 G A snv German Shepherd/Mixed breed (DS042), German Shepherd/Mixed breed (DS041), German Shepherd/Mixed breed (DS032) View more Information




adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10



Ensembl Acc Id: ENSCAFT00000004649   ⟹   ENSCAFP00000004303
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1105,951,691 - 105,955,460 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000065092   ⟹   ENSCAFP00000055766
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1105,951,691 - 106,007,357 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000082967   ⟹   ENSCAFP00000046015
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1105,951,935 - 105,955,027 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000085716   ⟹   ENSCAFP00000052647
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1105,951,691 - 105,954,360 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000089378   ⟹   ENSCAFP00000049439
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1106,002,789 - 106,007,581 (+)Ensembl
RefSeq Acc Id: NM_001197169   ⟹   NP_001184098
RefSeq Status: VALIDATED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11105,951,702 - 105,955,175 (+)NCBI
Dog10K_Boxer_Tasha1105,526,312 - 105,529,783 (+)NCBI
ROS_Cfam_1.01106,462,891 - 106,466,451 (+)NCBI
UMICH_Zoey_3.11106,134,079 - 106,137,554 (+)NCBI
UNSW_CanFamBas_1.01105,775,605 - 105,779,075 (+)NCBI
UU_Cfam_GSD_1.01106,571,164 - 106,574,633 (+)NCBI
Sequence:
Protein RefSeqs NP_001184098 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ADN94676 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000004303.3
  ENSCAFP00000046015.2
  ENSCAFP00030004555.1
  ENSCAFP00030004566.1
  ENSCAFP00040016984.1
  ENSCAFP00040017027.1
RefSeq Acc Id: NP_001184098   ⟸   NM_001197169
- Peptide Label: precursor
- UniProtKB: E2FGH4 (UniProtKB/TrEMBL),   A0A8C0YUV4 (UniProtKB/TrEMBL),   F1Q0C3 (UniProtKB/TrEMBL),   A0A8C0L4G7 (UniProtKB/TrEMBL),   A0A1R3UCN4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000004303   ⟸   ENSCAFT00000004649
Ensembl Acc Id: ENSCAFP00000046015   ⟸   ENSCAFT00000082967
Ensembl Acc Id: ENSCAFP00000055766   ⟸   ENSCAFT00000065092
Ensembl Acc Id: ENSCAFP00000049439   ⟸   ENSCAFT00000089378
Peptidase S1



1 to 37 of 37 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCAFG00000002905 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030002763 UniProtKB/TrEMBL
  ENSCAFG00040010563 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000004649.5 UniProtKB/TrEMBL
  ENSCAFT00000082967.2 UniProtKB/TrEMBL
  ENSCAFT00030005125.1 UniProtKB/TrEMBL
  ENSCAFT00030005139.1 UniProtKB/TrEMBL
  ENSCAFT00040019563.1 UniProtKB/TrEMBL
  ENSCAFT00040019613.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.10.10 UniProtKB/TrEMBL
InterPro Peptidase_S1_PA UniProtKB/TrEMBL
  Peptidase_S1_PA_chymotrypsin UniProtKB/TrEMBL
  Peptidase_S1A UniProtKB/TrEMBL
  Trypsin_dom UniProtKB/TrEMBL
  TRYPSIN_HIS UniProtKB/TrEMBL
  TRYPSIN_SER UniProtKB/TrEMBL
KEGG Report cfa:484354 UniProtKB/TrEMBL
NCBI Gene KLK4 ENTREZGENE
PANTHER KALLIKREIN-4 UniProtKB/TrEMBL
  KALLIKREIN-RELATED UniProtKB/TrEMBL
Pfam Trypsin UniProtKB/TrEMBL
PRINTS CHYMOTRYPSIN UniProtKB/TrEMBL
PROSITE TRYPSIN_DOM UniProtKB/TrEMBL
  TRYPSIN_HIS UniProtKB/TrEMBL
  TRYPSIN_SER UniProtKB/TrEMBL
SMART Tryp_SPc UniProtKB/TrEMBL
Superfamily-SCOP SSF50494 UniProtKB/TrEMBL
UniProt A0A1R3UCN4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0L4G7 ENTREZGENE
  A0A8C0M0R8_CANLF UniProtKB/TrEMBL
  A0A8C0YUV4 ENTREZGENE, UniProtKB/TrEMBL
  E2FGH4 ENTREZGENE
  F1Q0C3 ENTREZGENE
UniProt Secondary A0A8P0SZ24 UniProtKB/TrEMBL
  E2FGH4 UniProtKB/TrEMBL
  F1Q0C3 UniProtKB/TrEMBL
VGNC ID VGNC:42482 ENTREZGENE
1 to 37 of 37 rows