FOXI3 (forkhead box I3) - Rat Genome Database

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Gene: FOXI3 (forkhead box I3) Canis lupus familiaris
Analyze
Symbol: FOXI3
Name: forkhead box I3
RGD ID: 12293264
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); INVOLVED IN odontogenesis of dentin-containing tooth; epidermal cell fate specification (ortholog); hair follicle development (ortholog); ASSOCIATED WITH Clouston syndrome; Craniofacial Microsomia 2 (ortholog); genetic disease (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: forkhead box protein I3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11738,032,479 - 38,036,424 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1738,032,479 - 38,037,630 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1737,717,638 - 37,721,642 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01738,764,819 - 38,768,812 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1738,764,363 - 38,770,015 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11737,931,650 - 37,935,639 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01737,967,970 - 37,971,967 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01738,315,971 - 38,319,969 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA,ISS)

References
Additional References at PubMed
PMID:18787161   PMID:28710361   PMID:30032202  


Genomics

Comparative Map Data
FOXI3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11738,032,479 - 38,036,424 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1738,032,479 - 38,037,630 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1737,717,638 - 37,721,642 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01738,764,819 - 38,768,812 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1738,764,363 - 38,770,015 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11737,931,650 - 37,935,639 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01737,967,970 - 37,971,967 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01738,315,971 - 38,319,969 (+)NCBIUU_Cfam_GSD_1.0
FOXI3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38288,446,787 - 88,452,693 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl288,446,787 - 88,452,693 (-)EnsemblGRCh38hg38GRCh38
GRCh37288,746,306 - 88,752,211 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36288,520,284 - 88,539,630 (-)NCBINCBI36Build 36hg18NCBI36
Celera288,034,019 - 88,038,349 (+)NCBICelera
Cytogenetic Map2p11.2NCBI
HuRef287,669,933 - 87,673,975 (-)NCBIHuRef
CHM1_1288,677,039 - 88,681,361 (-)NCBICHM1_1
T2T-CHM13v2.0288,458,787 - 88,464,693 (-)NCBIT2T-CHM13v2.0
Foxi3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39670,933,590 - 70,938,050 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl670,933,515 - 70,938,050 (+)EnsemblGRCm39 Ensembl
GRCm38670,956,606 - 70,961,066 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl670,956,531 - 70,961,066 (+)EnsemblGRCm38mm10GRCm38
MGSCv37670,906,600 - 70,911,060 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36670,886,038 - 70,890,642 (+)NCBIMGSCv36mm8
Celera673,035,029 - 73,039,489 (+)NCBICelera
Cytogenetic Map6C1NCBI
cM Map632.14NCBI
Foxi3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84104,491,834 - 104,496,008 (+)NCBIGRCr8
mRatBN7.24102,933,487 - 102,937,655 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4102,933,409 - 102,937,655 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4108,324,289 - 108,328,469 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04104,099,378 - 104,103,558 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04102,703,383 - 102,707,551 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0498,775,908 - 98,780,082 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl498,775,908 - 98,780,082 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04163,554,654 - 163,558,828 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44104,145,540 - 104,149,714 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera492,109,460 - 92,113,635 (+)NCBICelera
Cytogenetic Map4q32NCBI
Foxi3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955424356,951 - 358,221 (+)NCBIChiLan1.0ChiLan1.0
FOXI3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21238,850,151 - 38,858,814 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A38,852,932 - 38,861,563 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A87,578,732 - 87,585,111 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A89,488,473 - 89,493,839 (-)NCBIpanpan1.1PanPan1.1panPan2
Foxi3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629280,335,534 - 80,340,880 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936712517,562 - 522,925 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936712517,566 - 522,709 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FOXI3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl357,586,485 - 57,590,344 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1357,586,669 - 57,590,366 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2360,254,441 - 60,256,594 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FOXI3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11418,310,904 - 18,317,115 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1418,312,661 - 18,317,033 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660801,456,094 - 1,463,940 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Foxi3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474916,033,767 - 16,039,249 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474916,033,754 - 16,041,679 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FOXI3
64 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 3 22 14 8 2 4 2 6 21 14 12 14 6

Sequence


Ensembl Acc Id: ENSCAFT00000043061   ⟹   ENSCAFP00000041322
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1738,032,479 - 38,037,630 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845023151   ⟹   ENSCAFP00845018150
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1738,764,363 - 38,770,015 (+)Ensembl
RefSeq Acc Id: NM_001135646   ⟹   NP_001129118
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11738,032,479 - 38,036,424 (+)NCBI
Dog10K_Boxer_Tasha1737,717,638 - 37,721,642 (+)NCBI
ROS_Cfam_1.01738,764,819 - 38,768,812 (+)NCBI
UMICH_Zoey_3.11737,931,650 - 37,935,639 (+)NCBI
UNSW_CanFamBas_1.01737,967,970 - 37,971,967 (+)NCBI
UU_Cfam_GSD_1.01738,315,971 - 38,319,969 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001129118 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein B5RHS5 (Get FASTA)   NCBI Sequence Viewer  
  CAQ53186 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000041322.3
  ENSCAFP00040024239.1
  ENSCAFP00845018150.1
RefSeq Acc Id: NP_001129118   ⟸   NM_001135646
- UniProtKB: B5RHS5 (UniProtKB/Swiss-Prot),   A0A8C0SRN4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000041322   ⟸   ENSCAFT00000043061
Ensembl Acc Id: ENSCAFP00845018150   ⟸   ENSCAFT00845023151
Protein Domains
Fork-head

Promoters
RGD ID:13686270
Promoter ID:EPDNEW_C4337
Type:single initiation site
Name:FOXI3_1
Description:forkhead box I3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11738,032,647 - 38,032,707EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000031026 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00040015149 UniProtKB/TrEMBL
  ENSCAFG00845013015 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000043061.4 UniProtKB/TrEMBL
  ENSCAFT00040027915.1 UniProtKB/TrEMBL
  ENSCAFT00845023151.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Fork_head_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FOX_domain-containing UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TF_fork_head_CS_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TF_fork_head_CS_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report cfa:483075 UniProtKB/Swiss-Prot
NCBI Gene FOXI3 ENTREZGENE
PANTHER FORKHEAD BOX PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FORKHEAD BOX PROTEIN I3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Forkhead UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS FORKHEAD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE FORK_HEAD_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FORK_HEAD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FORK_HEAD_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00339 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8C0SRN4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NYT5_CANLF UniProtKB/TrEMBL
  A0A8P0NSF5_CANLF UniProtKB/TrEMBL
  B5RHS5 ENTREZGENE, UniProtKB/Swiss-Prot
VGNC ID VGNC:40953 ENTREZGENE