FOXI3 (forkhead box I3) - Rat Genome Database

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Gene: FOXI3 (forkhead box I3) Chlorocebus sabaeus
Analyze
Symbol: FOXI3
Name: forkhead box I3
RGD ID: 18717402
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); INVOLVED IN epidermal cell fate specification (ortholog); hair follicle development (ortholog); odontogenesis of dentin-containing tooth (ortholog); ASSOCIATED WITH Clouston syndrome (ortholog); Craniofacial Microsomia 2 (ortholog); genetic disease (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: forkhead box protein I3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11418,310,904 - 18,317,115 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1418,312,661 - 18,317,033 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660801,456,094 - 1,463,940 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
FOXI3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11418,310,904 - 18,317,115 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1418,312,661 - 18,317,033 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660801,456,094 - 1,463,940 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
FOXI3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38288,446,787 - 88,452,693 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl288,446,787 - 88,452,693 (-)EnsemblGRCh38hg38GRCh38
GRCh37288,746,306 - 88,752,211 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36288,520,284 - 88,539,630 (-)NCBINCBI36Build 36hg18NCBI36
Celera288,034,019 - 88,038,349 (+)NCBICelera
Cytogenetic Map2p11.2NCBI
HuRef287,669,933 - 87,673,975 (-)NCBIHuRef
CHM1_1288,677,039 - 88,681,361 (-)NCBICHM1_1
T2T-CHM13v2.0288,458,787 - 88,464,693 (-)NCBIT2T-CHM13v2.0
Foxi3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39670,933,590 - 70,938,050 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl670,933,515 - 70,938,050 (+)EnsemblGRCm39 Ensembl
GRCm38670,956,606 - 70,961,066 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl670,956,531 - 70,961,066 (+)EnsemblGRCm38mm10GRCm38
MGSCv37670,906,600 - 70,911,060 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36670,886,038 - 70,890,642 (+)NCBIMGSCv36mm8
Celera673,035,029 - 73,039,489 (+)NCBICelera
Cytogenetic Map6C1NCBI
cM Map632.14NCBI
Foxi3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84104,491,834 - 104,496,008 (+)NCBIGRCr8
mRatBN7.24102,933,487 - 102,937,655 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4102,933,409 - 102,937,655 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4108,324,289 - 108,328,469 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04104,099,378 - 104,103,558 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04102,703,383 - 102,707,551 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0498,775,908 - 98,780,082 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl498,775,908 - 98,780,082 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04163,554,654 - 163,558,828 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44104,145,540 - 104,149,714 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera492,109,460 - 92,113,635 (+)NCBICelera
Cytogenetic Map4q32NCBI
Foxi3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955424356,951 - 358,221 (+)NCBIChiLan1.0ChiLan1.0
FOXI3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21238,850,151 - 38,858,814 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A38,852,932 - 38,861,563 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A87,578,732 - 87,585,111 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A89,488,473 - 89,493,839 (-)NCBIpanpan1.1PanPan1.1panPan2
FOXI3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11738,032,479 - 38,036,424 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1738,032,479 - 38,037,630 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1737,717,638 - 37,721,642 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01738,764,819 - 38,768,812 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1738,764,363 - 38,770,015 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11737,931,650 - 37,935,639 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01737,967,970 - 37,971,967 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01738,315,971 - 38,319,969 (+)NCBIUU_Cfam_GSD_1.0
Foxi3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629280,335,534 - 80,340,880 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936712517,562 - 522,925 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936712517,566 - 522,709 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FOXI3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl357,586,485 - 57,590,344 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1357,586,669 - 57,590,366 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2360,254,441 - 60,256,594 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Foxi3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474916,033,767 - 16,039,249 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474916,033,754 - 16,041,679 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FOXI3
118 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
18 15 17 17 17 18 15

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008008477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000014487   ⟹   ENSCSAP00000012459
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1418,312,661 - 18,317,033 (+)Ensembl
RefSeq Acc Id: XM_008008477   ⟹   XP_008006668
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11418,310,904 - 18,317,115 (+)NCBI
Vero_WHO_p1.0NW_0236660801,456,094 - 1,463,940 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008006668 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000012459
  ENSCSAP00000012459.1
RefSeq Acc Id: XP_008006668   ⟸   XM_008008477
- UniProtKB: A0A0D9RV20 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000012459   ⟸   ENSCSAT00000014487


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000016393 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000014487.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
InterPro Fork_head_dom UniProtKB/TrEMBL
  FOX_domain-containing UniProtKB/TrEMBL
  TF_fork_head_CS_1 UniProtKB/TrEMBL
  TF_fork_head_CS_2 UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
NCBI Gene FOXI3 ENTREZGENE
PANTHER FORKHEAD BOX PROTEIN UniProtKB/TrEMBL
  FORKHEAD BOX PROTEIN I3 UniProtKB/TrEMBL
Pfam Forkhead UniProtKB/TrEMBL
PRINTS FORKHEAD UniProtKB/TrEMBL
PROSITE FORK_HEAD_1 UniProtKB/TrEMBL
  FORK_HEAD_2 UniProtKB/TrEMBL
  FORK_HEAD_3 UniProtKB/TrEMBL
SMART SM00339 UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/TrEMBL
UniProt A0A0D9RV20 ENTREZGENE, UniProtKB/TrEMBL