Foxi3 (forkhead box I3) - Rat Genome Database
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Gene: Foxi3 (forkhead box I3) Mus musculus
Analyze
Symbol: Foxi3
Name: forkhead box I3
RGD ID: 9586081
MGI Page MGI
Description: Is expressed in several structures, including alimentary system; branchial arch; embryo ectoderm; integumental system; and sensory organ. Orthologous to human FOXI3 (forkhead box I3); INTERACTS WITH 4,4'-sulfonyldiphenol; bisphenol A; bisphenol F.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: forkhead box protein I3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39670,933,590 - 70,938,050 (+)NCBIGRCm39mm39
GRCm39 Ensembl670,933,515 - 70,938,050 (+)Ensembl
GRCm38670,956,606 - 70,961,066 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl670,956,531 - 70,961,066 (+)EnsemblGRCm38mm10GRCm38
MGSCv37670,906,600 - 70,911,060 (+)NCBIGRCm37mm9NCBIm37
MGSCv36670,886,038 - 70,890,642 (+)NCBImm8
Celera673,035,029 - 73,039,489 (+)NCBICelera
Cytogenetic Map6C1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
1. RGD automated import pipeline
2. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12466851   PMID:15376323   PMID:16530750   PMID:18787161   PMID:20171206   PMID:21873635   PMID:23441037   PMID:24650709   PMID:26450968   PMID:26550799   PMID:26581094   PMID:26952977  
PMID:26992132   PMID:31412026  


Genomics

Comparative Map Data
Foxi3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39670,933,590 - 70,938,050 (+)NCBIGRCm39mm39
GRCm39 Ensembl670,933,515 - 70,938,050 (+)Ensembl
GRCm38670,956,606 - 70,961,066 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl670,956,531 - 70,961,066 (+)EnsemblGRCm38mm10GRCm38
MGSCv37670,906,600 - 70,911,060 (+)NCBIGRCm37mm9NCBIm37
MGSCv36670,886,038 - 70,890,642 (+)NCBImm8
Celera673,035,029 - 73,039,489 (+)NCBICelera
Cytogenetic Map6C1NCBI
FOXI3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl288,446,787 - 88,452,693 (-)EnsemblGRCh38hg38GRCh38
GRCh38288,446,787 - 88,452,693 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37288,746,306 - 88,752,211 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36288,520,284 - 88,539,630 (-)NCBINCBI36hg18NCBI36
Celera288,034,019 - 88,038,349 (+)NCBI
Cytogenetic Map2p11.2NCBI
HuRef287,669,933 - 87,673,975 (-)NCBIHuRef
CHM1_1288,677,039 - 88,681,361 (-)NCBICHM1_1
Foxi3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24102,933,487 - 102,937,655 (+)NCBI
Rnor_6.0 Ensembl498,775,908 - 98,780,082 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0498,775,908 - 98,780,082 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04163,554,654 - 163,558,828 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44104,145,540 - 104,149,714 (+)NCBIRGSC3.4rn4RGSC3.4
Celera492,109,460 - 92,113,635 (+)NCBICelera
Cytogenetic Map4q31NCBI
Foxi3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955424356,951 - 358,221 (+)NCBIChiLan1.0ChiLan1.0
FOXI3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A89,488,473 - 89,493,839 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v02A87,578,732 - 87,585,111 (-)NCBIMhudiblu_PPA_v0panPan3
FOXI3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1738,032,479 - 38,037,630 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11738,032,479 - 38,036,424 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Foxi3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936712517,566 - 522,709 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FOXI3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl357,586,706 - 57,590,344 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1357,586,669 - 57,590,366 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2360,254,441 - 60,256,594 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FOXI3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11418,310,904 - 18,317,115 (+)NCBI
ChlSab1.1 Ensembl1418,312,661 - 18,317,033 (+)Ensembl
Foxi3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474916,033,754 - 16,041,679 (+)NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487426034Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080600000Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414873387692Mouse
10412213Sxbq2_mSGC/Knj cross B6 QTL 2 (mouse)Not determined61991268671322775Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62500000080000000Mouse
4141782Mrdq5_mmodifier of retinal degeneration QTL 5 (mouse)Not determined3285065078238974Mouse
14746995Manh60_mmandible shape 60 (mouse)63722567771225677Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
1301326Trbv4c2_mT cell receptor beta variable 4 (mouse)Not determined64089129671379171Mouse
12880424V25Dq4_mvitamin D inactive form serum level QTL 4 (mouse)64160000075600000Mouse
1301266Lmr4_mleishmaniasis resistance 4 (mouse)Not determined64211637376116515Mouse
11040600Lmr4c_mleishmaniasis resistance 4c (mouse)64211637376116515Mouse
11040601Lmr4a_mleishmaniasis resistance 4a (mouse)64211637376116515Mouse
11533915Mts4_mmammary tumor susceptibility 4 (mouse)64211637376116515Mouse
12910785Pwgrq16_mpost-weaning growth rate QTL 16 (mouse)64382681377811523Mouse
12910798Pwgrq5_mpre-weaning growth rate QTL 5 (mouse)64382681377811523Mouse
12910802Pwbwq12_mpost-weaning body weight QTL 12 (mouse)64382681377811523Mouse
12910807Pwbwq11_mpost-weaning body weight QTL 11 (mouse)64382681377811523Mouse
12910809Pwbwq10_mpost-weaning body weight QTL 10 (mouse)64382681377811523Mouse
12910820Ogrq3_moverall growth rate QTL 3 (mouse)64382681377811523Mouse
10043885Cia6c_mcollagen induced arthritis QTL 6c (mouse)Not determined64446587171119467Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64531405987426034Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
4140983Srilp_msleep response to influenza, light phase (mouse)Not determined4872655675447710Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1301254Skts11_mskin tumor susceptibility 11 (mouse)Not determined65117915085179300Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5437342788379171Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:142
Count of miRNA genes:65
Interacting mature miRNAs:70
Transcripts:ENSMUST00000069634, ENSMUST00000163089
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000069634   ⟹   ENSMUSP00000065664
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl670,956,606 - 70,961,066 (+)Ensembl
RefSeq Acc Id: ENSMUST00000163089   ⟹   ENSMUSP00000125380
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl670,956,531 - 70,961,063 (+)Ensembl
RefSeq Acc Id: NM_001101464   ⟹   NP_001094934
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39670,933,590 - 70,938,050 (+)NCBI
GRCm38670,956,606 - 70,961,066 (+)NCBI
Celera673,035,029 - 73,039,489 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001094934 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDK98929 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001094934   ⟸   NM_001101464
- UniProtKB: D3Z120 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000125380   ⟸   ENSMUST00000163089
RefSeq Acc Id: ENSMUSP00000065664   ⟸   ENSMUST00000069634
Protein Domains
Fork-head


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3511278 AgrOrtholog
Ensembl Genes ENSMUSG00000055874 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000065664 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000125380 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000069634 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000163089 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
InterPro TF_fork_head UniProtKB/TrEMBL
  TF_fork_head_CS UniProtKB/TrEMBL
  TF_fork_head_CS_2 UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
KEGG Report mmu:232077 UniProtKB/TrEMBL
MGD MGI:3511278 ENTREZGENE
NCBI Gene Foxi3 ENTREZGENE
Pfam Fork_head UniProtKB/TrEMBL
PhenoGen Foxi3 PhenoGen
PRINTS FORKHEAD UniProtKB/TrEMBL
PROSITE FORK_HEAD_1 UniProtKB/TrEMBL
  FORK_HEAD_2 UniProtKB/TrEMBL
  FORK_HEAD_3 UniProtKB/TrEMBL
SMART SM00339 UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/TrEMBL
UniProt D3Z120 ENTREZGENE, UniProtKB/TrEMBL
  E0CZH3_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-05-18 Foxi3  forkhead box I3  Foxi3  forkhead box I3  Data Merged 737654 PROVISIONAL