.
response to iron ion - Ontology Report - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:response to iron ion
go back to main search page
Accession:GO:0010039 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus.
Synonyms:exact_synonym: response to iron

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
Y

show annotations for term's descendants           Sort by:
response to iron ion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abat 4-aminobutyrate aminotransferase involved_in ISO
IEA		 RGD
GO_Central
Ensembl		 PMID:9719948 GO_REF:0000096 GO_REF:0000107 RGD:1598519 NCBI chr16:8,331,293...8,439,432
Ensembl chr16:8,331,293...8,439,432 		JBrowse link
G Abcg2 ATP binding cassette subfamily G member 2 (Junior blood group) ISO RGD PMID:15637178 RGD:2315589 NCBI chr 6:58,561,476...58,669,436
Ensembl chr 6:58,561,508...58,672,661 		JBrowse link
G Alad aminolevulinate, delta-, dehydratase involved_in ISO
IEA		 RGD
Ensembl		 PMID:14598909 GO_REF:0000107 RGD:4144204 NCBI chr 4:62,422,762...62,438,300
Ensembl chr 4:62,427,406...62,438,155 		JBrowse link
G Apbb1 amyloid beta precursor protein binding family B member 1 ISO RGD PMID:18723004 RGD:2301196 NCBI chr 7:105,207,691...105,231,151
Ensembl chr 7:105,207,690...105,230,860 		JBrowse link
G Bcl2 B cell leukemia/lymphoma 2 involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 1:106,465,906...106,642,020
Ensembl chr 1:106,465,908...106,642,004 		JBrowse link
G Bmp6 bone morphogenetic protein 6 ISO RGD PMID:21859731 RGD:7242407 NCBI chr13:38,529,098...38,684,283
Ensembl chr13:38,529,083...38,684,278 		JBrowse link
G C1qa complement component 1, q subcomponent, alpha polypeptide ISO RGD PMID:18723004 RGD:2301196 NCBI chr 4:136,623,227...136,626,155
Ensembl chr 4:136,623,228...136,626,114 		JBrowse link
G Casp6 caspase 6 involved_in ISO RGD
GO_Central		 PMID:17571084 GO_REF:0000096 RGD:2301311 NCBI chr 3:129,695,064...129,707,761
Ensembl chr 3:129,695,074...129,707,752 		JBrowse link
G Ccnd1 cyclin D1 ISO RGD PMID:16890145 RGD:1582331 NCBI chr 7:144,483,668...144,493,568
Ensembl chr 7:144,483,668...144,493,662 		JBrowse link
G Cpox coproporphyrinogen oxidase ISO RGD PMID:2289051 RGD:1600959 NCBI chr16:58,490,571...58,500,754
Ensembl chr16:58,490,655...58,537,999 		JBrowse link
G Cybrd1 cytochrome b reductase 1 acts_upstream_of_or_within IDA (PMID:11230685) MGI PMID:11230685 NCBI chr 2:70,948,398...70,973,270
Ensembl chr 2:70,948,267...70,973,270 		JBrowse link
G Dbh dopamine beta hydroxylase ISO RGD PMID:18363828 RGD:5129689 NCBI chr 2:27,055,519...27,073,216
Ensembl chr 2:27,055,245...27,073,212 		JBrowse link
G Drd2 dopamine receptor D2 involved_in ISO
IEA		 RGD
Ensembl		 PMID:19022977 GO_REF:0000107 RGD:2311557 NCBI chr 9:49,251,703...49,319,468
Ensembl chr 9:49,251,927...49,319,477 		JBrowse link
G Fkbp1a FK506 binding protein 1a ISO RGD PMID:17546681 RGD:2302076 NCBI chr 2:151,384,403...151,403,611
Ensembl chr 2:151,384,403...151,403,612 		JBrowse link
G Fn1 fibronectin 1 ISO RGD PMID:18723004 RGD:2301196 NCBI chr 1:71,624,632...71,692,439
Ensembl chr 1:71,624,679...71,692,359 		JBrowse link
G Fxn frataxin involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr19:24,236,909...24,257,954
Ensembl chr19:24,238,817...24,257,969 		JBrowse link
G Hamp hepcidin antimicrobial peptide involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 7:30,641,793...30,643,454
Ensembl chr 7:30,641,793...30,643,457 		JBrowse link
G Hamp2 hepcidin antimicrobial peptide 2 involved_in ISO GO_Central GO_REF:0000119 NCBI chr 7:30,621,797...30,623,606
Ensembl chr 7:30,621,797...30,624,106 		JBrowse link
G Hfe homeostatic iron regulator involved_in ISO GO_Central GO_REF:0000119 NCBI chr13:23,886,017...23,894,837
Ensembl chr13:23,886,017...23,894,837 		JBrowse link
G Hif1a hypoxia inducible factor 1, alpha subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:73,948,186...73,994,304
Ensembl chr12:73,948,149...73,994,304 		JBrowse link
G Mdm2 transformed mouse 3T3 cell double minute 2 involved_in ISO
IEA		 RGD
Ensembl		 PMID:20019189 GO_REF:0000107 RGD:2317357 NCBI chr10:117,524,780...117,546,663
Ensembl chr10:117,524,780...117,546,663 		JBrowse link
G Ngb neuroglobin ISO RGD PMID:23231908 RGD:9831163 NCBI chr12:87,144,305...87,149,313
Ensembl chr12:87,144,305...87,149,313 		JBrowse link
G Slc11a2 solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2 involved_in
NOT|involved_in		 ISO
IEA		 (PMID:15792797) RGD
Ensembl
UniProt		 PMID:12876064 PMID:15792797 GO_REF:0000107 RGD:1580429 NCBI chr15:100,285,779...100,322,090
Ensembl chr15:100,285,779...100,322,953 		JBrowse link
G Slc6a3 solute carrier family 6 (neurotransmitter transporter, dopamine), member 3 involved_in ISO
IEA		 RGD
Ensembl		 PMID:12672939 GO_REF:0000107 RGD:1625670 NCBI chr13:73,684,270...73,726,791
Ensembl chr13:73,684,866...73,726,791 		JBrowse link
G Tff1 trefoil factor 1 ISO RGD PMID:16629162 RGD:1599392 NCBI chr17:31,380,369...31,384,034
Ensembl chr17:31,380,369...31,384,251 		JBrowse link
G Tfr2 transferrin receptor 2 involved_in ISO GO_Central GO_REF:0000119 NCBI chr 5:137,568,127...137,586,344
Ensembl chr 5:137,568,102...137,585,743 		JBrowse link
G Tfrc transferrin receptor ISO RGD PMID:17060373 PMID:23635304 RGD:2292035 RGD:7244375 NCBI chr16:32,427,714...32,451,612
Ensembl chr16:32,427,738...32,451,612 		JBrowse link
G Urod uroporphyrinogen decarboxylase ISO in hexachlorobenzene-treated rats RGD PMID:891100 RGD:4145101 NCBI chr 4:116,847,161...116,851,561
Ensembl chr 4:116,847,162...116,851,610 		JBrowse link
cellular response to iron ion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp7a ATPase, copper transporting, alpha polypeptide ISO RGD PMID:19679821 PMID:23174565 RGD:11341702 RGD:11341808 NCBI chr  X:105,070,830...105,171,766
Ensembl chr  X:105,070,882...105,168,532 		JBrowse link
G B2m beta-2 microglobulin involved_in ISO GO_Central GO_REF:0000119 NCBI chr 2:121,978,168...121,983,563
Ensembl chr 2:121,978,167...121,983,564 		JBrowse link
G Bmp6 bone morphogenetic protein 6 involved_in IMP (PMID:19252488) BHF-UCL PMID:19252488 NCBI chr13:38,529,098...38,684,283
Ensembl chr13:38,529,083...38,684,278 		JBrowse link
G Hfe homeostatic iron regulator involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr13:23,886,017...23,894,837
Ensembl chr13:23,886,017...23,894,837 		JBrowse link
G Slc11a2 solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2 ISO RGD PMID:17663481 RGD:5688717 NCBI chr15:100,285,779...100,322,090
Ensembl chr15:100,285,779...100,322,953 		JBrowse link
G Slc25a39 solute carrier family 25, member 39 involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr11:102,293,795...102,299,501
Ensembl chr11:102,293,811...102,298,772 		JBrowse link
G Tfap2a transcription factor AP-2, alpha involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr13:40,867,278...40,891,715
Ensembl chr13:40,868,778...40,891,852 		JBrowse link
G Tfr2 transferrin receptor 2 involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 5:137,568,127...137,586,344
Ensembl chr 5:137,568,102...137,585,743 		JBrowse link
G Tfrc transferrin receptor involved_in TAS (PMID:25860887) BHF-UCL PMID:25860887 NCBI chr16:32,427,714...32,451,612
Ensembl chr16:32,427,738...32,451,612 		JBrowse link
G Trf transferrin involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 9:103,086,075...103,107,485
Ensembl chr 9:103,081,200...103,107,643 		JBrowse link
cellular response to iron(II) ion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpld1 glycosylphosphatidylinositol specific phospholipase D1 involved_in ISO GO_Central GO_REF:0000096 NCBI chr13:25,127,135...25,175,919
Ensembl chr13:25,127,135...25,176,484 		JBrowse link
G Gsk3b glycogen synthase kinase 3 beta ISO RGD PMID:19608791 RGD:10045561 NCBI chr16:37,909,363...38,066,446
Ensembl chr16:37,909,363...38,066,446 		JBrowse link
cellular response to iron(III) ion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B2m beta-2 microglobulin acts_upstream_of_or_within IMP (PMID:9531620) MGI PMID:9531620 NCBI chr 2:121,978,168...121,983,563
Ensembl chr 2:121,978,167...121,983,564 		JBrowse link
G Ccnb1 cyclin B1 ISO ferric ammonium citrate RGD PMID:18254965 RGD:2316320 NCBI chr13:100,915,247...100,922,994
Ensembl chr13:100,915,158...100,923,078 		JBrowse link
G Ireb2 iron responsive element binding protein 2 involved_in ISO RGD
GO_Central		 PMID:16135072 PMID:17469137 GO_REF:0000096 RGD:12904039 RGD:12904046 NCBI chr 9:54,769,942...54,819,812
Ensembl chr 9:54,771,073...54,819,814 		JBrowse link
G Mmp1b matrix metallopeptidase 1b (interstitial collagenase) ISO RGD PMID:21683124 RGD:7207286 NCBI chr 9:7,367,670...7,388,026
Ensembl chr 9:7,368,239...7,388,047 		JBrowse link
G Mmp9 matrix metallopeptidase 9 ISO RGD PMID:21683124 RGD:7207286 NCBI chr 2:164,782,246...164,797,770
Ensembl chr 2:164,782,700...164,797,770 		JBrowse link
response to iron(II) ion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aco1 aconitase 1 involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 4:40,143,429...40,199,011
Ensembl chr 4:40,143,081...40,198,338 		JBrowse link
G Atg5 autophagy related 5 involved_in ISO
IEA		 RGD
Ensembl		 PMID:23187302 GO_REF:0000107 RGD:11561914 NCBI chr10:44,144,325...44,240,295
Ensembl chr10:44,144,354...44,240,287 		JBrowse link
G Becn1 beclin 1, autophagy related involved_in ISO
IEA		 RGD
Ensembl		 PMID:23187302 GO_REF:0000107 RGD:11561914 NCBI chr11:101,179,084...101,193,112
Ensembl chr11:101,176,778...101,193,112 		JBrowse link
G Ireb2 iron responsive element binding protein 2 ISO RGD PMID:19943190 RGD:6893272 NCBI chr 9:54,769,942...54,819,812
Ensembl chr 9:54,771,073...54,819,814 		JBrowse link
G Lcn2 lipocalin 2 ISO RGD PMID:23416150 RGD:126790480 NCBI chr 2:32,274,649...32,277,751
Ensembl chr 2:32,274,645...32,278,264 		JBrowse link
G Lct lactase involved_in ISO RGD
GO_Central		 PMID:16081762 GO_REF:0000096 RGD:1600248 NCBI chr 1:128,212,493...128,256,055
Ensembl chr 1:128,212,493...128,256,055 		JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha involved_in ISO
IEA		 RGD
Ensembl		 PMID:23187302 GO_REF:0000107 RGD:11561914 NCBI chr 2:155,118,284...155,119,993
Ensembl chr 2:155,118,217...155,119,993 		JBrowse link
G Pawr PRKC, apoptosis, WT1, regulator ISO RGD PMID:10349840 RGD:9835366 NCBI chr10:108,168,050...108,250,708
Ensembl chr10:108,167,982...108,250,101 		JBrowse link
G Pdx1 pancreatic and duodenal homeobox 1 involved_in ISO
IEA		 RGD
Ensembl		 PMID:16081762 GO_REF:0000107 RGD:1600248 NCBI chr 5:147,206,907...147,212,658
Ensembl chr 5:147,206,769...147,212,658 		JBrowse link
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 ISO FeSO4 RGD PMID:17600839 RGD:4108504 NCBI chr13:101,817,269...101,904,725
Ensembl chr13:101,817,071...101,904,725 		JBrowse link
G Snca synuclein, alpha involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 6:60,708,557...60,806,839
Ensembl chr 6:60,708,559...60,806,839 		JBrowse link
response to iron(III) ion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp7a ATPase, copper transporting, alpha polypeptide ISO RGD PMID:16629162 RGD:1599392 NCBI chr  X:105,070,830...105,171,766
Ensembl chr  X:105,070,882...105,168,532 		JBrowse link
G Casp12 caspase 12 ISO RGD PMID:19594550 RGD:2311452 NCBI chr 9:5,345,419...5,373,034
Ensembl chr 9:5,345,430...5,373,032 		JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 involved_in ISO
IEA		 Hematite RGD
Ensembl		 PMID:15211619 GO_REF:0000107 RGD:2306667 NCBI chr 9:57,595,211...57,611,107
Ensembl chr 9:57,595,211...57,611,107 		JBrowse link
G G6pdx glucose-6-phosphate dehydrogenase X-linked ISO RGD PMID:24599681 RGD:10449122 NCBI chr  X:73,453,089...73,472,486
Ensembl chr  X:73,453,089...73,472,800 		JBrowse link
G Gsr glutathione reductase ISO RGD PMID:24388910 RGD:11059508 NCBI chr 8:34,143,266...34,188,190
Ensembl chr 8:34,142,551...34,188,191 		JBrowse link
G Ireb2 iron responsive element binding protein 2 involved_in ISO RGD
GO_Central		 PMID:21753061 GO_REF:0000096 RGD:12904028 NCBI chr 9:54,769,942...54,819,812
Ensembl chr 9:54,771,073...54,819,814 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28628
    response to stimulus 10994
      response to chemical 5241
        response to metal ion 540
          response to iron ion 53
            cellular response to iron ion + 16
            detoxification of iron ion 0
            response to iron(II) ion + 13
            response to iron(III) ion + 10
paths to the root