Trf (transferrin) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Trf (transferrin) Mus musculus
Analyze
Symbol: Trf
Name: transferrin
RGD ID: 11406
MGI Page MGI
Description: Predicted to enable iron chaperone activity; iron ion binding activity; and transferrin receptor binding activity. Involved in several processes, including ERK1 and ERK2 cascade; osteoclast differentiation; and positive regulation of bone resorption. Acts upstream of or within iron ion transport and response to bacterium. Located in clathrin-coated pit and cytoplasmic vesicle. Is expressed in several structures, including blood; brain; liver; placenta; and white fat. Used to study atransferrinemia. Human ortholog(s) of this gene implicated in several diseases, including anemia; atransferrinemia; glucose metabolism disease (multiple); iron deficiency anemia; and restless legs syndrome. Orthologous to human TF (transferrin).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: AI266983; beta-1 metal-binding globulin; Cd176; H; HP; hpx; hypotransferrinemia with hemochromatosis; MGC102653; serotransferrin; siderophilin; Tf; Tfn
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399103,086,075 - 103,107,485 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9103,081,200 - 103,107,643 (-)EnsemblGRCm39 Ensembl
GRCm389103,208,876 - 103,230,286 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9103,204,001 - 103,230,444 (-)EnsemblGRCm38mm10GRCm38
MGSCv379103,111,206 - 103,132,616 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369103,067,026 - 103,088,436 (-)NCBIMGSCv36mm8
Celera9102,759,422 - 102,780,824 (-)NCBICelera
Cytogenetic Map9F1NCBI
cM Map955.03NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(1->4)-beta-D-glucan  (EXP)
(R)-pantothenic acid  (ISO)
(R,R,R)-alpha-tocopherol  (ISO)
(S)-nicotine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
17beta-estradiol 3-benzoate  (ISO)
2,3,7,8-tetrabromodibenzodioxine  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-acetamidofluorene  (ISO)
3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine  (ISO)
3,3',5-triiodo-L-thyronine  (ISO)
3-chloropropane-1,2-diol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-nonylphenol  (EXP)
6-propyl-2-thiouracil  (ISO)
acetylsalicylic acid  (ISO)
acrylamide  (ISO)
acrylic acid  (ISO)
aflatoxin B1  (EXP,ISO)
Aflatoxin B2 alpha  (ISO)
alcohol  (ISO)
all-trans-retinoic acid  (ISO)
aluminium atom  (EXP,ISO)
aluminium(0)  (EXP,ISO)
amiodarone  (ISO)
amphetamine  (ISO)
aniline  (ISO)
Aroclor 1254  (ISO)
arotinoid acid  (ISO)
arsane  (EXP)
arsenic atom  (EXP)
arsenite(3-)  (EXP)
arsenous acid  (EXP)
asbestos  (ISO)
astemizole  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
benzo[e]pyrene  (ISO)
bexarotene  (ISO)
biotin  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
bleomycin A2  (ISO)
bromobenzene  (ISO)
busulfan  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP,ISO)
carnosic acid  (EXP)
CGP 52608  (ISO)
CHIR 99021  (ISO)
chlordecone  (EXP)
chlorpromazine  (ISO)
chlorpyrifos  (EXP)
chromium atom  (ISO)
chromium(6+)  (EXP,ISO)
ciguatoxin CTX1B  (EXP)
cisplatin  (EXP,ISO)
citric acid  (ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
cocaine  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(I) chloride  (ISO)
copper(II) sulfate  (ISO)
corticosterone  (ISO)
cortisol  (ISO)
Cuprizon  (ISO)
curcumin  (ISO)
cyclosporin A  (EXP,ISO)
cypermethrin  (EXP)
DDE  (ISO)
deferiprone  (EXP,ISO)
deoxynivalenol  (ISO)
desferrioxamine B  (EXP)
dexamethasone  (EXP,ISO)
dextran sulfate  (EXP)
diacetylmonoxime  (ISO)
diarsenic trioxide  (EXP)
dibenzo[a,l]pyrene  (ISO)
dichloroacetic acid  (EXP)
dichlorvos  (EXP,ISO)
dicrotophos  (ISO)
diethyl maleate  (ISO)
diiodine  (ISO)
diisopropyl fluorophosphate  (EXP,ISO)
dimethyl sulfoxide  (ISO)
diquat  (EXP)
disodium selenite  (EXP)
diuron  (ISO)
divanadium pentaoxide  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
erastin  (ISO)
ethanol  (EXP,ISO)
ethylene glycol  (ISO)
ferric ammonium citrate  (ISO)
ferric oxide  (ISO)
ferric pyrophosphate  (ISO)
flavonoids  (ISO)
flutamide  (ISO)
folic acid  (EXP)
gallium atom  (ISO)
genistein  (EXP)
glafenine  (ISO)
glycerol  (ISO)
glyphosate  (EXP)
GW 4064  (EXP)
haloperidol  (EXP)
hexachlorobenzene  (ISO)
hydrogen peroxide  (ISO)
hydrogen sulfide  (EXP)
indometacin  (ISO)
iodide salt  (ISO)
iron atom  (EXP,ISO)
iron trichloride  (ISO)
iron(0)  (EXP,ISO)
iron(2+) sulfate (anhydrous)  (ISO)
iron(III) citrate  (ISO)
isoniazide  (ISO)
ketamine  (ISO)
L-ascorbic acid  (ISO)
L-ascorbic acid 2-phosphate  (ISO)
lead diacetate  (ISO)
lead(0)  (ISO)
Licochalcone B  (ISO)
lipopolysaccharide  (EXP,ISO)
LY294002  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
melatonin  (ISO)
mercury atom  (ISO)
mercury dichloride  (ISO)
mercury(0)  (ISO)
methapyrilene  (ISO)
methyl beta-cyclodextrin  (ISO)
monocrotaline  (EXP)
N-ethylmaleimide  (EXP)
N-nitrosodiethylamine  (ISO)
N-nitrosomorpholine  (ISO)
N-Nitrosopyrrolidine  (ISO)
naphthalene  (EXP)
nefazodone  (ISO)
nickel atom  (ISO)
nicotine  (ISO)
nitrofen  (ISO)
nocodazole  (EXP)
Nonylphenol  (ISO)
O-methyleugenol  (ISO)
ochratoxin A  (ISO)
okadaic acid  (ISO)
orlistat  (ISO)
oxaliplatin  (ISO)
ozone  (EXP,ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
pentanal  (ISO)
perfluorobutyric acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (EXP,ISO)
permethrin  (ISO)
phenobarbital  (ISO)
phenylarsine oxide  (EXP)
PhIP  (ISO)
pirinixic acid  (EXP,ISO)
prednisolone  (ISO)
propanal  (ISO)
propane-1,2-diol  (ISO)
propiconazole  (EXP)
quercetin  (ISO)
quinoxyfen  (ISO)
resveratrol  (ISO)
Rhapontigenin  (ISO)
rosmarinic acid  (ISO)
S-adenosyl-L-methioninate  (ISO)
S-adenosyl-L-methionine  (ISO)
sarin  (EXP,ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
simvastatin  (ISO)
sodium arsenite  (EXP,ISO)
Soman  (EXP,ISO)
splitomicin  (ISO)
succimer  (EXP)
T-2 toxin  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
tetracycline  (ISO)
thioacetamide  (ISO)
thyroxine  (ISO)
titanium atom  (ISO)
titanium dioxide  (EXP)
tributylstannane  (ISO)
triphenyl phosphate  (ISO)
Triptolide  (ISO)
triptonide  (EXP)
tungsten  (EXP)
uranium atom  (ISO)
valproic acid  (EXP,ISO)
vancomycin  (EXP)
vinclozolin  (ISO)
vorinostat  (ISO)
XAV939  (ISO)
zearalenone  (ISO)
zinc atom  (ISO)
zinc dichloride  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Nerve degeneration is prevented by a single intraneural apotransferrin injection into colchicine-injured sciatic nerves in the rat. Aquino JB, etal., Brain Res. 2006 Oct 30;1117(1):80-91. Epub 2006 Sep 28.
2. Target identification of the novel antiobesity agent tungstate in adipose tissue from obese rats. Barcelo-Batllori S, etal., Proteomics. 2005 Dec;5(18):4927-35.
3. IRON-HF study: A randomized trial to assess the effects of iron in heart failure patients with anemia. Beck-da-Silva L, etal., Int J Cardiol. 2013 May 13. pii: S0167-5273(13)00848-6. doi: 10.1016/j.ijcard.2013.04.181.
4. Association of noninvasively measured renal protein biomarkers with histologic features of lupus nephritis. Brunner HI, etal., Arthritis Rheum. 2012 Aug;64(8):2687-97. doi: 10.1002/art.34426.
5. Polski merkuriusz lekarski : organ Polskiego Towarzystwa Lekarskiego Cymerys M, etal., Pol Merkur Lekarski. 2003 Oct;15(88):352-4; discussion 354-5.
6. Iron metabolism and its relationship to anemia and immune system in Trypanosoma evansi infected rats. da Silva CB, etal., Exp Parasitol. 2013 Mar;133(3):357-64. doi: 10.1016/j.exppara.2012.12.010. Epub 2012 Dec 25.
7. Ferritin and transferrin are both predictive of the onset of hyperglycemia in men and women over 3 years: the data from an epidemiological study on the Insulin Resistance Syndrome (DESIR) study. Fumeron F, etal., Diabetes Care. 2006 Sep;29(9):2090-4.
8. Intranasal administration of aTf protects and repairs the neonatal white matter after a cerebral hypoxic-ischemic event. Guardia Clausi M, etal., Glia. 2012 Oct;60(10):1540-54. doi: 10.1002/glia.22374. Epub 2012 Jun 26.
9. Decisive indicator for gastrointestinal workup in anemic patients with nondialysis chronic kidney disease. Hwang HS, etal., Int J Med Sci. 2012;9(8):634-41. doi: 10.7150/ijms.4969. Epub 2012 Sep 19.
10. Time-dependent plasma protein changes in streptozotocin-induced diabetic rats before and after fungal polysaccharide treatments. Kim SW, etal., J Proteome Res. 2006 Nov;5(11):2966-76.
11. Cellular iron uptake, trafficking and metabolism: Key molecules and mechanisms and their roles in disease. Lane DJ, etal., Biochim Biophys Acta. 2015 May;1853(5):1130-44. doi: 10.1016/j.bbamcr.2015.01.021. Epub 2015 Feb 4.
12. Study of iron metabolism disturbances in an animal model of insulin resistance. Le Guenno G, etal., Diabetes Res Clin Pract. 2007 Mar 8;.
13. Human transferrin G277S mutation: a risk factor for iron deficiency anaemia. Lee PL, etal., Br J Haematol. 2001 Nov;115(2):329-33.
14. Urinary protein markers predict the severity of renal histological lesions in children with mesangial proliferative glomerulonephritis. Li Y, etal., BMC Nephrol. 2012 May 20;13:29. doi: 10.1186/1471-2369-13-29.
15. Restless legs syndrome in end-stage renal disease: a multicenter study in Taiwan. Lin CH, etal., Eur J Neurol. 2013 Feb 1. doi: 10.1111/ene.12095.
16. The immunobiology of apotransferrin in type 1 diabetes. Mangano K, etal., Clin Exp Immunol. 2012 Sep;169(3):244-52. doi: 10.1111/j.1365-2249.2012.04619.x.
17. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
18. MGDs mouse GO annotations MGD data from the GO Consortium
19. MGD IEA MGD IEA
20. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
21. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
22. Mouse MP Annotation Import Pipeline RGD automated import pipeline
23. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
24. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
25. Alterations in intracerebral hemorrhage-induced brain injury in the iron deficient rat. Shao J, etal., Acta Neurochir Suppl. 2006;96:183-7.
26. Changes of gene expression of iron regulatory proteins during turpentine oil-induced acute-phase response in the rat. Sheikh N, etal., Lab Invest. 2007 Apr 9;.
27. [Dynamic change of lipid peroxidation-related protein expression and the intervention effects of Yiguanjian decoction in a rat model of CCl4-induced liver fibrosis]. Tao Q, etal., Zhonghua Gan Zang Bing Za Zhi. 2012 Feb;20(2):116-21. doi: 10.3760/cma.j.issn.1007-3418.2012.02.010.
28. Ferrritin and transferrin are associated with metabolic syndrome abnormalities and their change over time in a general population. The D.E.S.I.R. Study. Vari IS, etal., Diabetes Care. 2007 Apr 6;.
29. Deferoxamine attenuates iron-induced long-term neurotoxicity in rats with traumatic brain injury. Zhang L, etal., Neurol Sci. 2013 May;34(5):639-45. doi: 10.1007/s10072-012-1090-1. Epub 2012 Apr 27.
30. Iron chelator alleviates tubulointerstitial fibrosis in diabetic nephropathy rats by inhibiting the expression of tenascinC and other correlation factors. Zou C, etal., Endocrine. 2013 Mar 7.
Additional References at PubMed
PMID:75870   PMID:926748   PMID:1302014   PMID:1335284   PMID:1354648   PMID:1397688   PMID:1426763   PMID:1427837   PMID:1450516   PMID:1457587   PMID:1674729   PMID:1679528  
PMID:1783381   PMID:1883968   PMID:1889815   PMID:1914521   PMID:2572508   PMID:2575582   PMID:2601714   PMID:2619996   PMID:3106151   PMID:3416641   PMID:3436225   PMID:3611056  
PMID:3681112   PMID:3693348   PMID:4353891   PMID:4566335   PMID:6152904   PMID:6200103   PMID:6375655   PMID:7295297   PMID:7472784   PMID:7504460   PMID:7511695   PMID:7636015  
PMID:7690561   PMID:7749229   PMID:7796808   PMID:7833260   PMID:8011525   PMID:8020952   PMID:8034180   PMID:8088844   PMID:8173952   PMID:8248032   PMID:8277372   PMID:8314596  
PMID:8325648   PMID:8336951   PMID:8486374   PMID:8507976   PMID:8563165   PMID:8875074   PMID:8889548   PMID:8995766   PMID:9096119   PMID:9148921   PMID:9277455   PMID:9364327  
PMID:9420335   PMID:9486091   PMID:9502734   PMID:9621303   PMID:9722956   PMID:9729367   PMID:9765983   PMID:9790770   PMID:9850571   PMID:10049364   PMID:10349636   PMID:10352021  
PMID:10441734   PMID:10484490   PMID:10556206   PMID:10561526   PMID:10600893   PMID:10772805   PMID:10910930   PMID:10982846   PMID:11002334   PMID:11042159   PMID:11076861   PMID:11134256  
PMID:11159549   PMID:11217851   PMID:11230685   PMID:11340100   PMID:11532431   PMID:11739192   PMID:11860021   PMID:11862405   PMID:12121420   PMID:12466851   PMID:12477932   PMID:12576298  
PMID:13237229   PMID:14051864   PMID:15229288   PMID:15247266   PMID:15251432   PMID:15270724   PMID:15292400   PMID:15319276   PMID:15489334   PMID:15782199   PMID:15848140   PMID:15961514  
PMID:16081760   PMID:16109169   PMID:16141072   PMID:16141073   PMID:16227996   PMID:16498401   PMID:16590761   PMID:16602821   PMID:16611921   PMID:16787915   PMID:16799992   PMID:16998850  
PMID:17330941   PMID:17376890   PMID:17634284   PMID:17875985   PMID:18477453   PMID:18509548   PMID:18554416   PMID:18722179   PMID:19061864   PMID:19154717   PMID:19252502   PMID:19339555  
PMID:19423573   PMID:19596281   PMID:19951918   PMID:20080761   PMID:20121435   PMID:20427320   PMID:20431983   PMID:20572014   PMID:20634490   PMID:20956801   PMID:21034753   PMID:21266579  
PMID:21267068   PMID:21605550   PMID:21677750   PMID:21873635   PMID:21953618   PMID:21983562   PMID:21993681   PMID:22008794   PMID:22144676   PMID:22155722   PMID:22159020   PMID:22363754  
PMID:22792322   PMID:22874919   PMID:23012479   PMID:23055941   PMID:23169997   PMID:23303939   PMID:23416069   PMID:23650374   PMID:24035762   PMID:24236640   PMID:24409331   PMID:24454764  
PMID:24952961   PMID:25810521   PMID:26639305   PMID:26880306   PMID:27100851   PMID:28344592   PMID:31040226   PMID:31339576   PMID:31434707   PMID:31577955   PMID:31811276   PMID:32325033  
PMID:32374849   PMID:32382087   PMID:33001366   PMID:34321999   PMID:36293380   PMID:37018657   PMID:37163821  


Genomics

Comparative Map Data
Trf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399103,086,075 - 103,107,485 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9103,081,200 - 103,107,643 (-)EnsemblGRCm39 Ensembl
GRCm389103,208,876 - 103,230,286 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9103,204,001 - 103,230,444 (-)EnsemblGRCm38mm10GRCm38
MGSCv379103,111,206 - 103,132,616 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369103,067,026 - 103,088,436 (-)NCBIMGSCv36mm8
Celera9102,759,422 - 102,780,824 (-)NCBICelera
Cytogenetic Map9F1NCBI
cM Map955.03NCBI
TF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383133,661,998 - 133,796,641 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3133,746,040 - 133,796,641 (+)EnsemblGRCh38hg38GRCh38
GRCh373133,380,842 - 133,515,485 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363134,947,925 - 134,980,325 (+)NCBINCBI36Build 36hg18NCBI36
Build 343134,947,932 - 134,980,333NCBI
Celera3131,892,092 - 131,924,970 (+)NCBICelera
Cytogenetic Map3q22.1NCBI
HuRef3130,844,635 - 130,877,514 (+)NCBIHuRef
CHM1_13133,428,386 - 133,461,264 (+)NCBICHM1_1
T2T-CHM13v2.03136,407,161 - 136,541,840 (+)NCBIT2T-CHM13v2.0
Tf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88112,668,667 - 112,695,376 (-)NCBIGRCr8
mRatBN7.28103,789,780 - 103,816,487 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8103,767,995 - 103,816,511 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8109,449,188 - 109,475,891 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08107,648,350 - 107,675,056 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08105,491,027 - 105,517,729 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08111,694,570 - 111,721,275 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8111,673,547 - 111,721,333 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08111,085,984 - 111,112,688 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48108,217,774 - 108,244,487 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18108,237,229 - 108,263,942 (-)NCBI
Celera8103,167,171 - 103,194,045 (-)NCBICelera
Cytogenetic Map8q32NCBI
LOC102027549
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555014,801,885 - 4,831,910 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555014,801,710 - 4,832,025 (-)NCBIChiLan1.0ChiLan1.0
TF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22131,677,472 - 131,709,131 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13131,682,201 - 131,713,860 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03130,799,063 - 130,830,227 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13138,274,159 - 138,305,481 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3138,274,159 - 138,305,476 (+)Ensemblpanpan1.1panPan2
LOC477072
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12330,658,250 - 30,683,816 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2330,595,704 - 30,683,845 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2330,637,375 - 30,662,940 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02331,178,649 - 31,204,226 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12330,872,448 - 30,898,034 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02330,930,277 - 30,955,845 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02331,177,861 - 31,203,421 (+)NCBIUU_Cfam_GSD_1.0
LOC101970551
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560270,095,470 - 70,135,492 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365296,856,042 - 6,895,989 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1374,930,655 - 74,972,763 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11374,930,655 - 74,970,599 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21382,429,021 - 82,469,005 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap13q31NCBI
TF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11556,586,311 - 56,618,304 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1556,586,104 - 56,618,149 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604129,568,907 - 29,601,746 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101719398
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473010,078,165 - 10,109,349 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Trf
826 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:989
Count of miRNA genes:577
Interacting mature miRNAs:705
Transcripts:ENSMUST00000035158, ENSMUST00000112503, ENSMUST00000112645, ENSMUST00000126359, ENSMUST00000164377, ENSMUST00000165296, ENSMUST00000168142, ENSMUST00000170904
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959897283109089068Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63239711120191934Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63239711120191934Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963239711120191934Mouse
1301302Pas4_mpulmonary adenoma susceptibility 4 (mouse)Not determined969121898103121973Mouse
1301621Hpic1_mhaloperidol-induced catalepsy 1 (mouse)Not determined969428566103428698Mouse
1301573Etohcta8_methanol conditioned taste aversion 8 (mouse)Not determined972859058106859205Mouse
10054068El8_mepilepsy 8 (mouse)Not determined972859058106859205Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974250230108250378Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975682646114303447Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975682646114303447Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976417989110418183Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978522698112522808Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979279863113279941Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981680321115680445Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982792386116792481Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982792386116792481Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982792386116792481Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984406017118406120Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985779563108518385Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986107600120107729Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986121898120118690Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986625682120625682Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987677199121677199Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989162124123162124Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989289476123289595Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989440541123440541Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989859058118767089Mouse
12910770Splic1_mspleen iron content 1 (mouse)991291078124359700Mouse
12910772Lvic6_mliver iron content 6 (mouse)991291078124359700Mouse
12910773Splic3_mspleen iron content 3 (mouse)991291078124359700Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991518283124359700Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991518283124359700Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991518283124359700Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991518283124359700Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991518283124359700Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991518283124359700Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991560372124359700Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991560372124359700Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991560372124359700Mouse
1301484Bwq6_mbody weight (mouse)Not determined993591658124359700Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993591658124359700Mouse
14746992Manh67_mmandible shape 67 (mouse)993865836124359700Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994863354112701997Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996746658124359700Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9100889929124359700Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9101829255124359700Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9101829255124359700Mouse

Markers in Region
BE132832  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389103,213,789 - 103,213,923UniSTSGRCm38
MGSCv379103,116,119 - 103,116,253UniSTSGRCm37
Celera9102,764,306 - 102,764,440UniSTS
Cytogenetic Map9F1-F3UniSTS
Whitehead/MRC_RH91052.21UniSTS
AI266983  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389103,208,917 - 103,209,045UniSTSGRCm38
MGSCv379103,111,247 - 103,111,375UniSTSGRCm37
Celera9102,759,463 - 102,759,591UniSTS
Cytogenetic Map9F1-F3UniSTS
Whitehead/MRC_RH91052.21UniSTS
D9Mit24  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389103,230,401 - 103,230,530UniSTSGRCm38
MGSCv379103,132,731 - 103,132,860UniSTSGRCm37
Celera9102,780,939 - 102,781,068UniSTS
Cytogenetic Map9F1-F3UniSTS
cM Map956.0UniSTS
Whitehead Genetic956.8UniSTS
Whitehead/MRC_RH91052.21UniSTS
Whitehead_YAC9 UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS
Trf  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389103,230,395 - 103,230,592UniSTSGRCm38
MGSCv379103,132,725 - 103,132,922UniSTSGRCm37
Celera9102,780,933 - 102,781,130UniSTS
Cytogenetic Map9F1-F3UniSTS
cM Map956.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_133977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC156633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF027336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF440692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH002096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH002107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK085754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC008559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC012313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC018573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC020295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC022986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC092046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  J03299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S67217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S67218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000035158   ⟹   ENSMUSP00000035158
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9103,085,994 - 103,107,643 (-)Ensembl
GRCm38.p6 Ensembl9103,208,795 - 103,230,444 (-)Ensembl
RefSeq Acc Id: ENSMUST00000112503
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9103,098,094 - 103,099,874 (-)Ensembl
GRCm38.p6 Ensembl9103,220,895 - 103,222,675 (-)Ensembl
RefSeq Acc Id: ENSMUST00000112645   ⟹   ENSMUSP00000108264
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9103,081,200 - 103,107,472 (-)Ensembl
GRCm38.p6 Ensembl9103,204,001 - 103,230,273 (-)Ensembl
RefSeq Acc Id: ENSMUST00000126359   ⟹   ENSMUSP00000120472
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9103,100,284 - 103,105,641 (-)Ensembl
GRCm38.p6 Ensembl9103,223,085 - 103,228,442 (-)Ensembl
RefSeq Acc Id: ENSMUST00000164377   ⟹   ENSMUSP00000128647
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9103,093,013 - 103,107,469 (-)Ensembl
GRCm38.p6 Ensembl9103,215,814 - 103,230,270 (-)Ensembl
RefSeq Acc Id: ENSMUST00000165296   ⟹   ENSMUSP00000129013
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9103,099,296 - 103,107,465 (-)Ensembl
GRCm38.p6 Ensembl9103,222,097 - 103,230,266 (-)Ensembl
RefSeq Acc Id: ENSMUST00000168142   ⟹   ENSMUSP00000128609
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9103,087,767 - 103,097,065 (-)Ensembl
GRCm38.p6 Ensembl9103,210,568 - 103,219,866 (-)Ensembl
RefSeq Acc Id: ENSMUST00000170904   ⟹   ENSMUSP00000128390
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9103,087,835 - 103,099,262 (-)Ensembl
GRCm38.p6 Ensembl9103,210,636 - 103,222,063 (-)Ensembl
RefSeq Acc Id: ENSMUST00000190051
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9103,086,224 - 103,089,205 (-)Ensembl
GRCm38.p6 Ensembl9103,209,025 - 103,212,006 (-)Ensembl
RefSeq Acc Id: NM_133977   ⟹   NP_598738
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399103,086,075 - 103,107,485 (-)NCBI
GRCm389103,208,876 - 103,230,286 (-)ENTREZGENE
MGSCv379103,111,206 - 103,132,616 (-)RGD
Celera9102,759,422 - 102,780,824 (-)RGD
cM Map9 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_598738 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA39438 (Get FASTA)   NCBI Sequence Viewer  
  AAA40488 (Get FASTA)   NCBI Sequence Viewer  
  AAA40489 (Get FASTA)   NCBI Sequence Viewer  
  AAA40490 (Get FASTA)   NCBI Sequence Viewer  
  AAA40491 (Get FASTA)   NCBI Sequence Viewer  
  AAB28966 (Get FASTA)   NCBI Sequence Viewer  
  AAB28967 (Get FASTA)   NCBI Sequence Viewer  
  AAB84034 (Get FASTA)   NCBI Sequence Viewer  
  AAH08559 (Get FASTA)   NCBI Sequence Viewer  
  AAH12313 (Get FASTA)   NCBI Sequence Viewer  
  AAH22986 (Get FASTA)   NCBI Sequence Viewer  
  AAH92046 (Get FASTA)   NCBI Sequence Viewer  
  AAL34533 (Get FASTA)   NCBI Sequence Viewer  
  BAC39532 (Get FASTA)   NCBI Sequence Viewer  
  BAE25124 (Get FASTA)   NCBI Sequence Viewer  
  BAE27253 (Get FASTA)   NCBI Sequence Viewer  
  BAE28960 (Get FASTA)   NCBI Sequence Viewer  
  BAE28981 (Get FASTA)   NCBI Sequence Viewer  
  BAE29847 (Get FASTA)   NCBI Sequence Viewer  
  BAE40332 (Get FASTA)   NCBI Sequence Viewer  
  BAE40747 (Get FASTA)   NCBI Sequence Viewer  
  EDL21066 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000035158
  ENSMUSP00000035158.10
  ENSMUSP00000108264.2
  ENSMUSP00000120472.2
  ENSMUSP00000128390.2
  ENSMUSP00000128609.2
  ENSMUSP00000128647.2
  ENSMUSP00000129013.2
GenBank Protein Q921I1 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_598738   ⟸   NM_133977
- Peptide Label: precursor
- UniProtKB: Q8VII5 (UniProtKB/Swiss-Prot),   Q64515 (UniProtKB/Swiss-Prot),   Q63915 (UniProtKB/Swiss-Prot),   Q62359 (UniProtKB/Swiss-Prot),   Q62358 (UniProtKB/Swiss-Prot),   Q62357 (UniProtKB/Swiss-Prot),   Q61803 (UniProtKB/Swiss-Prot),   Q58E69 (UniProtKB/Swiss-Prot),   Q3UBW7 (UniProtKB/Swiss-Prot),   O35421 (UniProtKB/Swiss-Prot),   Q922C0 (UniProtKB/Swiss-Prot),   Q921I1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000128647   ⟸   ENSMUST00000164377
RefSeq Acc Id: ENSMUSP00000035158   ⟸   ENSMUST00000035158
RefSeq Acc Id: ENSMUSP00000108264   ⟸   ENSMUST00000112645
RefSeq Acc Id: ENSMUSP00000128390   ⟸   ENSMUST00000170904
RefSeq Acc Id: ENSMUSP00000120472   ⟸   ENSMUST00000126359
RefSeq Acc Id: ENSMUSP00000129013   ⟸   ENSMUST00000165296
RefSeq Acc Id: ENSMUSP00000128609   ⟸   ENSMUST00000168142
Protein Domains
Transferrin-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q921I1-F1-model_v2 AlphaFold Q921I1 1-697 view protein structure

Promoters
RGD ID:6848498
Promoter ID:MM_ACW:51818
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Liver,   Lung,   Spleen
Transcripts:TRF.HSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369103,111,351 - 103,113,072 (-)MPROMDB
RGD ID:6848500
Promoter ID:MM_ACW:51819
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Liver,   Spleen
Transcripts:TRF.ISEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369103,113,969 - 103,114,469 (-)MPROMDB
RGD ID:6845277
Promoter ID:MM_KWN:58578
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Liver
Transcripts:OTTMUST00000060813
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369103,130,244 - 103,130,744 (-)MPROMDB
RGD ID:6845279
Promoter ID:MM_KWN:58579
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   Spleen
Transcripts:OTTMUST00000060811,   UC009RGI.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369103,132,501 - 103,133,152 (-)MPROMDB
RGD ID:8670630
Promoter ID:EPDNEW_M13346
Type:initiation region
Name:Trf_1
Description:Mus musculus transferrin , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389103,230,270 - 103,230,330EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:98821 AgrOrtholog
Ensembl Genes ENSMUSG00000032554 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000035158 ENTREZGENE
  ENSMUST00000035158.16 UniProtKB/Swiss-Prot
  ENSMUST00000112645.8 UniProtKB/Swiss-Prot
  ENSMUST00000126359.2 UniProtKB/TrEMBL
  ENSMUST00000164377.2 UniProtKB/TrEMBL
  ENSMUST00000165296.8 UniProtKB/TrEMBL
  ENSMUST00000168142.8 UniProtKB/TrEMBL
  ENSMUST00000170904.2 UniProtKB/TrEMBL
Gene3D-CATH Periplasmic binding protein-like II UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Serotransferrin_mammal UniProtKB/Swiss-Prot
  Transferrin UniProtKB/Swiss-Prot
  Transferrin-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transferrin_Fe_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:22041 UniProtKB/Swiss-Prot
MGD MGI:98821 ENTREZGENE
NCBI Gene 22041 ENTREZGENE
PANTHER SEROTRANSFERRIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRANSFERRIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Transferrin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Trf PhenoGen
PIRSF Serotransferrin UniProtKB/Swiss-Prot
  Transferrin UniProtKB/Swiss-Prot
PRINTS TRANSFERRIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE TRANSFERRIN_LIKE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRANSFERRIN_LIKE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRANSFERRIN_LIKE_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRANSFERRIN_LIKE_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART TR_FER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Periplasmic binding protein-like II UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3YYR8_MOUSE UniProtKB/TrEMBL
  E9Q2Q7_MOUSE UniProtKB/TrEMBL
  E9Q939_MOUSE UniProtKB/TrEMBL
  F7BAE9_MOUSE UniProtKB/TrEMBL
  F7CJN9_MOUSE UniProtKB/TrEMBL
  O35421 ENTREZGENE
  Q3UBW7 ENTREZGENE
  Q58E69 ENTREZGENE
  Q61803 ENTREZGENE
  Q62357 ENTREZGENE
  Q62358 ENTREZGENE
  Q62359 ENTREZGENE
  Q63915 ENTREZGENE
  Q64515 ENTREZGENE
  Q8VII5 ENTREZGENE
  Q921I1 ENTREZGENE
  Q922C0 ENTREZGENE
  TRFE_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary O35421 UniProtKB/Swiss-Prot
  Q3UBW7 UniProtKB/Swiss-Prot
  Q58E69 UniProtKB/Swiss-Prot
  Q61803 UniProtKB/Swiss-Prot
  Q62357 UniProtKB/Swiss-Prot
  Q62358 UniProtKB/Swiss-Prot
  Q62359 UniProtKB/Swiss-Prot
  Q63915 UniProtKB/Swiss-Prot
  Q64515 UniProtKB/Swiss-Prot
  Q8VII5 UniProtKB/Swiss-Prot
  Q922C0 UniProtKB/Swiss-Prot