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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:autoimmune thyroiditis pathway
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Accession:PW:0001024 term browser browse the term
Definition:Autoimmune thyroid disease (AITD) groups several conditions that are generally relatively mild but that can progress to serious symptoms.
Synonyms:exact_synonym: AITD pathway;   autoimmune thyroid disease pathway
 related_synonym: KEGG:05320


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autoimmune thyroiditis pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd28 Cd28 molecule IEA KEGG rno:05320 NCBI chr 9:62,166,324...62,194,674
Ensembl chr 9:62,166,192...62,194,685 		JBrowse link
G Cd40 CD40 molecule IEA KEGG rno:05320 NCBI chr 3:153,790,372...153,805,279
Ensembl chr 3:153,790,449...153,805,534 		JBrowse link
G Cd40lg CD40 ligand IEA KEGG rno:05320 NCBI chr  X:135,127,052...135,138,768
Ensembl chr  X:135,126,969...135,138,306 		JBrowse link
G Cd80 Cd80 molecule IEA KEGG rno:05320 NCBI chr11:62,254,543...62,293,414
Ensembl chr11:62,254,624...62,292,030 		JBrowse link
G Cd86 CD86 molecule IEA KEGG rno:05320 NCBI chr11:64,142,193...64,200,816
Ensembl chr11:64,163,828...64,200,818 		JBrowse link
G Cga glycoprotein hormones, alpha polypeptide IEA KEGG rno:05320 NCBI chr 5:49,486,915...49,499,192
Ensembl chr 5:49,487,068...49,499,191 		JBrowse link
G Ctla4 cytotoxic T-lymphocyte-associated protein 4 IEA KEGG rno:05320 NCBI chr 9:62,318,874...62,325,978
Ensembl chr 9:62,319,312...62,324,963 		JBrowse link
G Fas Fas cell surface death receptor IEA KEGG rno:05320 NCBI chr 1:231,798,963...231,832,591
Ensembl chr 1:231,798,960...231,832,591 		JBrowse link
G Faslg Fas ligand IEA KEGG rno:05320 NCBI chr13:74,151,519...74,172,760
Ensembl chr13:74,154,954...74,162,215 		JBrowse link
G Gzmb granzyme B IEA KEGG rno:05320 NCBI chr15:30,343,352...30,346,814
Ensembl chr15:30,173,603...30,346,814 		JBrowse link
G Ifna1 interferon, alpha 1 IEA KEGG rno:05320 NCBI chr 5:103,097,356...103,097,925
Ensembl chr 5:103,097,356...103,097,925 		JBrowse link
G Ifna2 interferon alpha 2 IEA KEGG rno:05320 NCBI chr 5:103,258,617...103,259,195 JBrowse link
G Ifna4 interferon, alpha 4 IEA KEGG rno:05320 NCBI chr 5:103,069,174...103,070,120
Ensembl chr 5:103,069,483...103,070,052 		JBrowse link
G Ifna4l1 interferon, alpha 4 like 1 IEA KEGG rno:05320 NCBI chr 5:103,524,733...103,525,302
Ensembl chr 5:103,524,733...103,525,302 		JBrowse link
G Ifna5 interferon, alpha 5 IEA KEGG rno:05320 NCBI chr 5:103,187,852...103,188,430 JBrowse link
G Il10 interleukin 10 IEA KEGG rno:05320 NCBI chr13:42,472,625...42,477,308
Ensembl chr13:42,472,839...42,477,313 		JBrowse link
G Il2 interleukin 2 IEA KEGG rno:05320 NCBI chr 2:120,004,862...120,009,566
Ensembl chr 2:120,004,862...120,009,566 		JBrowse link
G Il4 interleukin 4 IEA KEGG rno:05320 NCBI chr10:37,771,203...37,776,750
Ensembl chr10:37,771,203...37,776,750 		JBrowse link
G Il5 interleukin 5 IEA KEGG rno:05320 NCBI chr10:37,874,342...37,877,213
Ensembl chr10:37,874,342...37,877,213 		JBrowse link
G Prf1 perforin 1 IEA KEGG rno:05320 NCBI chr20:29,246,202...29,251,712
Ensembl chr20:29,246,202...29,251,701 		JBrowse link
G RT1-A1 RT1 class Ia, locus A1 IEA KEGG rno:05320 NCBI chr20:4,905,309...4,914,593 JBrowse link
G RT1-A2 RT1 class Ia, locus A2 IEA KEGG rno:05320 NCBI chr20:4,870,939...4,910,183 JBrowse link
G RT1-A3 RT1 class I, locus A3 IEA KEGG rno:05320 NCBI chr20:4,847,518...4,851,344 JBrowse link
G RT1-Ba RT1 class II, locus Ba IEA KEGG rno:05320 NCBI chr20:4,575,134...4,579,727
Ensembl chr20:4,575,134...4,579,744 		JBrowse link
G RT1-Bb RT1 class II, locus Bb IEA KEGG rno:05320 NCBI chr20:4,596,558...4,602,201
Ensembl chr20:4,596,559...4,607,597 		JBrowse link
G RT1-CE1 RT1 class I, locus1 IEA KEGG rno:05320 NCBI chr20:3,555,779...3,559,487
Ensembl chr20:3,555,782...3,559,486 		JBrowse link
G RT1-CE10 RT1 class I, locus CE10 IEA KEGG rno:05320 NCBI chr20:3,377,284...3,380,301 JBrowse link
G RT1-CE11 RT1 class I, locus CE11 IEA KEGG rno:05320 NCBI chr20:3,355,393...3,358,520
Ensembl chr20:3,350,937...3,380,362 		JBrowse link
G RT1-CE12 RT1 class I, locus CE12 IEA KEGG rno:05320 NCBI chr20:3,338,907...3,342,547 JBrowse link
G RT1-CE13 RT1 class I, locus CE13 IEA KEGG rno:05320 NCBI chr20:3,314,830...3,318,106 JBrowse link
G RT1-CE14 RT1 class I, locus CE14 IEA KEGG rno:05320 NCBI chr20:3,296,654...3,300,795
Ensembl chr20:3,297,196...3,305,134 		JBrowse link
G RT1-CE15 RT1 class I, locus CE15 IEA KEGG rno:05320 NCBI chr20:3,275,575...3,279,074
Ensembl chr20:3,264,172...3,279,563
Ensembl chr20:3,264,172...3,279,563 		JBrowse link
G RT1-CE16 RT1 class I, locus CE16 IEA KEGG rno:05320 NCBI chr20:3,257,109...3,260,747
Ensembl chr20:3,257,123...3,279,563 		JBrowse link
G RT1-CE2 RT1 class I, locus CE2 IEA KEGG rno:05320 NCBI chr20:3,538,452...3,541,841
Ensembl chr20:3,537,809...3,541,790 		JBrowse link
G RT1-CE3 RT1 class I, locus CE3 IEA KEGG rno:05320 NCBI chr20:3,516,647...3,520,938
Ensembl chr20:2,623,953...2,692,081 		JBrowse link
G RT1-CE4 RT1 class I, locus CE4 IEA KEGG rno:05320 NCBI chr20:3,431,509...3,504,535 JBrowse link
G RT1-CE5 RT1 class I, locus CE5 IEA KEGG rno:05320 NCBI chr20:3,403,418...3,479,476 JBrowse link
G RT1-CE7 RT1 class I, locus CE7 IEA KEGG rno:05320 NCBI chr20:3,434,205...3,437,152 JBrowse link
G RT1-Cl RT1 class Ib, locus Cl IEA KEGG rno:05320
G RT1-Da RT1 class II, locus Da IEA KEGG rno:05320 NCBI chr20:4,513,464...4,518,457
Ensembl chr20:4,512,911...4,518,455 		JBrowse link
G RT1-Db1 RT1 class II, locus Db1 IEA KEGG rno:05320 NCBI chr20:4,548,664...4,558,237
Ensembl chr20:4,548,666...4,558,258 		JBrowse link
G RT1-DMa RT1 class II, locus DMa IEA KEGG rno:05320 NCBI chr20:4,707,028...4,710,432
Ensembl chr20:4,707,028...4,710,432 		JBrowse link
G RT1-DMb RT1 class II, locus DMb IEA KEGG rno:05320 NCBI chr20:4,693,102...4,700,340
Ensembl chr20:4,693,103...4,700,340 		JBrowse link
G RT1-DOa RT1 class II, locus DOa IEA KEGG rno:05320 NCBI chr20:4,753,587...4,756,590
Ensembl chr20:4,753,598...4,756,577 		JBrowse link
G RT1-DOb RT1 class II, locus DOb IEA KEGG rno:05320 NCBI chr20:4,619,418...4,625,627
Ensembl chr20:4,619,816...4,625,667 		JBrowse link
G RT1-Ha RT1 class II, locus Ha IEA KEGG rno:05320 NCBI chr20:4,760,631...4,770,662
Ensembl chr20:4,760,118...4,770,244 		JBrowse link
G RT1-M1-2 RT1 class I, locus M1, gene 2 IEA KEGG rno:05320 NCBI chr20:1,909,506...1,913,423
Ensembl chr20:1,910,656...1,917,936 		JBrowse link
G RT1-M1-4 RT1 class I, locus M1, gene 4 IEA KEGG rno:05320 NCBI chr20:1,891,365...1,893,585
Ensembl chr20:1,889,164...1,893,815 		JBrowse link
G RT1-M10-1 RT1 class I, locus M10, gene 1 IEA KEGG rno:05320 NCBI chr20:1,986,817...1,988,908
Ensembl chr20:1,986,788...2,020,117 		JBrowse link
G RT1-M2 RT1 class Ib, locus M2 IEA KEGG rno:05320 NCBI chr20:978,918...981,510
Ensembl chr20:978,935...981,723 		JBrowse link
G RT1-M3-1 RT1 class Ib, locus M3, gene 1 IEA KEGG rno:05320 NCBI chr20:1,323,976...1,328,126
Ensembl chr20:1,287,521...1,328,117 		JBrowse link
G RT1-M4 RT1 class Ib, locus M4 IEA KEGG rno:05320 NCBI chr20:1,552,072...1,555,823 JBrowse link
G RT1-M6-1 RT1 class I, locus M6, gene 1 IEA KEGG rno:05320 NCBI chr20:1,566,220...1,569,151
Ensembl chr20:1,583,299...1,586,215 		JBrowse link
G RT1-M6-2 RT1 class I, locus M6, gene 2 IEA KEGG rno:05320 NCBI chr20:1,583,267...1,587,099
Ensembl chr20:1,583,299...1,586,215 		JBrowse link
G RT1-N1 RT1 class Ib, locus N1 IEA KEGG rno:05320
G RT1-N2 RT1 class Ib, locus N2 IEA KEGG rno:05320 NCBI chr20:2,641,157...2,645,439
Ensembl chr20:2,641,202...2,644,900 		JBrowse link
G RT1-N3 RT1 class Ib, locus N3 IEA KEGG rno:05320 NCBI chr20:2,659,132...2,665,536
Ensembl chr20:2,661,584...2,665,530 		JBrowse link
G RT1-O1 RT1 class Ib, locus O1 IEA KEGG rno:05320 NCBI chr20:2,655,116...2,657,520
Ensembl chr20:2,655,116...2,657,520 		JBrowse link
G RT1-S3 RT1 class Ib, locus S3 IEA KEGG rno:05320 NCBI chr20:2,670,654...2,675,411
Ensembl chr20:2,670,709...2,675,411 		JBrowse link
G RT1-T18 RT1 class Ib, locus T18 IEA KEGG rno:05320 NCBI chr20:2,605,261...2,608,909
Ensembl chr20:2,605,265...2,608,909 		JBrowse link
G RT1-T24-1 RT1 class I, locus T24, gene 1 IEA KEGG rno:05320 NCBI chr20:2,761,495...2,774,871
Ensembl chr20:2,718,279...2,776,154 		JBrowse link
G RT1-T24-4 RT1 class I, locus T24, gene 4 IEA KEGG rno:05320 NCBI chr20:2,684,515...2,747,878
Ensembl chr20:2,684,515...2,692,511
Ensembl chr20:2,684,515...2,692,511 		JBrowse link
G Tg thyroglobulin IEA KEGG rno:05320 NCBI chr 7:98,418,293...98,603,210
Ensembl chr 7:98,418,293...98,603,210 		JBrowse link
G Tpo thyroid peroxidase IEA KEGG rno:05320 NCBI chr 6:46,698,402...46,768,199
Ensembl chr 6:46,698,414...46,768,199 		JBrowse link
G Tshb thyroid stimulating hormone subunit beta IEA KEGG rno:05320 NCBI chr 2:190,224,676...190,229,559
Ensembl chr 2:190,224,676...190,229,559 		JBrowse link
G Tshr thyroid stimulating hormone receptor IEA KEGG rno:05320 NCBI chr 6:110,341,585...110,475,297
Ensembl chr 6:110,341,581...110,474,538 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 6092
    disease pathway 1954
      immune system disease pathway 293
        autoimmune thyroiditis pathway 66
paths to the root