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autoimmune thyroiditis pathway - Ontology Report - Rat Genome Database

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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (https://rgd.mcw.edu/rgdweb/contact/contactus.html).
Term:autoimmune thyroiditis pathway
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Accession:PW:0001024 term browser browse the term
Definition:Autoimmune thyroid disease (AITD) groups several conditions that are generally relatively mild but that can progress to serious symptoms.
Synonyms:exact_synonym: AITD pathway;   autoimmune thyroid disease pathway
 related_synonym: KEGG:05320

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autoimmune thyroiditis pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd28 Cd28 molecule IEA KEGG rno:05320 NCBI chr 9:69,660,316...69,689,192
Ensembl chr 9:62,166,192...62,194,685 		JBrowse link
G Cd40 CD40 molecule IEA KEGG rno:05320 NCBI chr 3:174,209,113...174,224,592
Ensembl chr 3:153,790,449...153,805,534 		JBrowse link
G Cd40lg CD40 ligand IEA KEGG rno:05320 NCBI chr  X:140,164,341...140,176,057
Ensembl chr  X:135,126,969...135,138,306 		JBrowse link
G Cd80 Cd80 molecule IEA KEGG rno:05320 NCBI chr11:75,760,073...75,798,978
Ensembl chr11:62,254,624...62,292,030 		JBrowse link
G Cd86 CD86 molecule IEA KEGG rno:05320 NCBI chr11:77,647,565...77,706,178
Ensembl chr11:64,163,828...64,200,818 		JBrowse link
G Cga glycoprotein hormones, alpha polypeptide IEA KEGG rno:05320 NCBI chr 5:54,283,109...54,295,464
Ensembl chr 5:49,487,068...49,499,191 		JBrowse link
G Ctla4 cytotoxic T-lymphocyte-associated protein 4 IEA KEGG rno:05320 NCBI chr 9:69,812,859...69,819,959
Ensembl chr 9:62,319,312...62,324,963 		JBrowse link
G Fas Fas cell surface death receptor IEA KEGG rno:05320 NCBI chr 1:241,212,155...241,245,774
Ensembl chr 1:231,798,960...231,832,591 		JBrowse link
G Faslg Fas ligand IEA KEGG rno:05320 NCBI chr13:76,680,885...76,706,042
Ensembl chr13:74,154,954...74,162,215 		JBrowse link
G Gzmb granzyme B IEA KEGG rno:05320 NCBI chr15:34,459,007...34,462,469
Ensembl chr15:30,173,603...30,346,814 		JBrowse link
G Ifna1 interferon, alpha 1 IEA KEGG rno:05320 NCBI chr 5:108,143,240...108,143,809
Ensembl chr 5:103,097,356...103,097,925 		JBrowse link
G Ifna2 interferon alpha 2 IEA KEGG rno:05320 NCBI chr 5:103,258,617...103,259,195 JBrowse link
G Ifna4 interferon, alpha 4 IEA KEGG rno:05320 NCBI chr 5:108,115,064...108,116,010
Ensembl chr 5:103,069,483...103,070,052 		JBrowse link
G Ifna4l1 interferon, alpha 4 like 1 IEA KEGG rno:05320 NCBI chr 5:108,640,546...108,641,115
Ensembl chr 5:103,524,733...103,525,302 		JBrowse link
G Ifna5 interferon, alpha 5 IEA KEGG rno:05320 NCBI chr 5:108,233,736...108,234,314 JBrowse link
G Il10 interleukin 10 IEA KEGG rno:05320 NCBI chr13:45,024,921...45,029,586
Ensembl chr13:42,472,839...42,477,313 		JBrowse link
G Il2 interleukin 2 IEA KEGG rno:05320 NCBI chr 2:121,932,968...121,937,672
Ensembl chr 2:120,004,862...120,009,566 		JBrowse link
G Il4 interleukin 4 IEA KEGG rno:05320 NCBI chr10:38,272,003...38,277,549
Ensembl chr10:37,771,203...37,776,750 		JBrowse link
G Il5 interleukin 5 IEA KEGG rno:05320 NCBI chr10:38,375,132...38,378,003
Ensembl chr10:37,874,342...37,877,213 		JBrowse link
G Prf1 perforin 1 IEA KEGG rno:05320 NCBI chr20:29,789,040...29,794,550
Ensembl chr20:29,246,202...29,251,701 		JBrowse link
G RT1-A1 RT1 class Ia, locus A1 IEA KEGG rno:05320 NCBI chr20:4,907,139...4,910,798 JBrowse link
G RT1-A2 RT1 class Ia, locus A2 IEA KEGG rno:05320 NCBI chr20:4,872,720...4,876,425 JBrowse link
G RT1-A3 RT1 class I, locus A3 IEA KEGG rno:05320 NCBI chr20:4,847,518...4,851,344 JBrowse link
G RT1-Ba RT1 class II, locus Ba IEA KEGG rno:05320 NCBI chr20:4,577,057...4,581,650
Ensembl chr20:4,575,134...4,579,744 		JBrowse link
G RT1-Bb RT1 class II, locus Bb IEA KEGG rno:05320 NCBI chr20:4,598,475...4,604,118
Ensembl chr20:4,596,559...4,607,597 		JBrowse link
G RT1-CE1 RT1 class I, locus 1 IEA KEGG rno:05320 NCBI chr20:3,560,455...3,564,428
Ensembl chr20:3,555,782...3,559,486 		JBrowse link
G RT1-CE10 RT1 class I, locus CE10 IEA KEGG rno:05320 NCBI chr20:3,381,377...3,385,052 JBrowse link
G RT1-CE11 RT1 class I, locus CE11 IEA KEGG rno:05320 NCBI chr20:3,355,422...3,385,063
Ensembl chr20:3,350,937...3,380,362 		JBrowse link
G RT1-CE12 RT1 class I, locus CE12 IEA KEGG rno:05320 NCBI chr20:3,290,831...3,347,349 JBrowse link
G RT1-CE13 RT1 class I, locus CE13 IEA KEGG rno:05320 NCBI chr20:3,314,491...3,322,815 JBrowse link
G RT1-CE14 RT1 class I, locus CE14 IEA KEGG rno:05320 NCBI chr20:3,301,813...3,305,472
Ensembl chr20:3,297,196...3,305,134 		JBrowse link
G RT1-CE15 RT1 class I, locus CE15 IEA KEGG rno:05320 NCBI chr20:3,269,135...3,283,819
Ensembl chr20:3,264,172...3,279,563
Ensembl chr20:3,264,172...3,279,563 		JBrowse link
G RT1-CE16 RT1 class I, locus CE16 IEA KEGG rno:05320 NCBI chr20:3,261,656...3,265,548
Ensembl chr20:3,257,123...3,279,563 		JBrowse link
G RT1-CE2 RT1 class I, locus CE2 IEA KEGG rno:05320 NCBI chr20:3,542,984...3,546,753
Ensembl chr20:3,537,809...3,541,790 		JBrowse link
G RT1-CE3 RT1 class I, locus CE3 IEA KEGG rno:05320 NCBI chr20:3,516,647...3,520,938
Ensembl chr20:2,623,953...2,692,081 		JBrowse link
G RT1-CE4 RT1 class I, locus CE4 IEA KEGG rno:05320 NCBI chr20:3,431,509...3,504,535 JBrowse link
G RT1-CE5 RT1 class I, locus CE5 IEA KEGG rno:05320 NCBI chr20:3,407,880...3,484,130 JBrowse link
G RT1-CE7 RT1 class I, locus CE7 IEA KEGG rno:05320 NCBI chr20:3,434,205...3,437,152 JBrowse link
G RT1-Cl RT1 class Ib, locus Cl IEA KEGG rno:05320
G RT1-Da RT1 class II, locus Da IEA KEGG rno:05320 NCBI chr20:4,515,393...4,520,387
Ensembl chr20:4,512,911...4,518,455 		JBrowse link
G RT1-Db1 RT1 class II, locus Db1 IEA KEGG rno:05320 NCBI chr20:4,550,594...4,560,182
Ensembl chr20:4,548,666...4,558,258 		JBrowse link
G RT1-DMa RT1 class II, locus DMa IEA KEGG rno:05320 NCBI chr20:4,708,932...4,712,335
Ensembl chr20:4,707,028...4,710,432 		JBrowse link
G RT1-DMb RT1 class II, locus DMb IEA KEGG rno:05320 NCBI chr20:4,695,009...4,702,560
Ensembl chr20:4,693,103...4,700,340 		JBrowse link
G RT1-DOa RT1 class II, locus DOa IEA KEGG rno:05320 NCBI chr20:4,755,287...4,758,491
Ensembl chr20:4,753,598...4,756,577 		JBrowse link
G RT1-DOb RT1 class II, locus DOb IEA KEGG rno:05320 NCBI chr20:4,621,336...4,627,537
Ensembl chr20:4,619,816...4,625,667 		JBrowse link
G RT1-Ha RT1 class II, locus Ha IEA KEGG rno:05320 NCBI chr20:4,762,425...4,772,439
Ensembl chr20:4,760,118...4,770,244 		JBrowse link
G RT1-M1-2 RT1 class I, locus M1, gene 2 IEA KEGG rno:05320 NCBI chr20:1,909,506...1,913,423
Ensembl chr20:1,910,656...1,917,936 		JBrowse link
G RT1-M1-4 RT1 class I, locus M1, gene 4 IEA KEGG rno:05320 NCBI chr20:1,891,365...1,893,585
Ensembl chr20:1,889,164...1,893,815 		JBrowse link
G RT1-M10-ps1 RT1 class I, locus M10, pseudogene 1 IEA KEGG rno:05320 NCBI chr20:1,986,817...1,988,908
Ensembl chr20:1,986,788...2,020,117 		JBrowse link
G RT1-M2 RT1 class Ib, locus M2 IEA KEGG rno:05320 NCBI chr20:978,918...981,510
Ensembl chr20:978,935...981,723 		JBrowse link
G RT1-M3-1 RT1 class Ib, locus M3, gene 1 IEA KEGG rno:05320 NCBI chr20:1,329,227...1,333,394
Ensembl chr20:1,287,521...1,328,117 		JBrowse link
G RT1-M4 RT1 class Ib, locus M4 IEA KEGG rno:05320 NCBI chr20:1,552,072...1,555,823 JBrowse link
G RT1-M6-1 RT1 class I, locus M6, gene 1 IEA KEGG rno:05320 NCBI chr20:1,566,220...1,569,151
Ensembl chr20:1,583,299...1,586,215 		JBrowse link
G RT1-M6-2 RT1 class I, locus M6, gene 2 IEA KEGG rno:05320 NCBI chr20:1,583,267...1,587,099
Ensembl chr20:1,583,299...1,586,215 		JBrowse link
G RT1-N1 RT1 class Ib, locus N1 IEA KEGG rno:05320
G RT1-N2 RT1 class Ib, locus N2 IEA KEGG rno:05320 NCBI chr20:2,641,157...2,645,439
Ensembl chr20:2,641,202...2,644,900 		JBrowse link
G RT1-N3 RT1 class Ib, locus N3 IEA KEGG rno:05320 NCBI chr20:2,666,469...2,670,355
Ensembl chr20:2,661,584...2,665,530 		JBrowse link
G RT1-O1 RT1 class Ib, locus O1 IEA KEGG rno:05320 NCBI chr20:2,659,937...2,662,341
Ensembl chr20:2,655,116...2,657,520 		JBrowse link
G RT1-S3 RT1 class Ib, locus S3 IEA KEGG rno:05320 NCBI chr20:2,675,463...2,680,229
Ensembl chr20:2,670,709...2,675,411 		JBrowse link
G RT1-T18 RT1 class Ib, locus T18 IEA KEGG rno:05320 NCBI chr20:2,605,261...2,608,909
Ensembl chr20:2,605,265...2,608,909 		JBrowse link
G RT1-T24-1 RT1 class I, locus T24, gene 1 IEA KEGG rno:05320 NCBI chr20:2,766,304...2,779,680
Ensembl chr20:2,718,279...2,776,154 		JBrowse link
G RT1-T24-4 RT1 class I, locus T24, gene 4 IEA KEGG rno:05320 NCBI chr20:2,689,329...2,749,848
Ensembl chr20:2,684,515...2,692,511
Ensembl chr20:2,684,515...2,692,511 		JBrowse link
G Tg thyroglobulin IEA KEGG rno:05320 NCBI chr 7:100,307,349...100,492,246
Ensembl chr 7:98,418,293...98,603,210 		JBrowse link
G Tpo thyroid peroxidase IEA KEGG rno:05320 NCBI chr 6:52,425,998...52,495,793
Ensembl chr 6:46,698,414...46,768,199 		JBrowse link
G Tshb thyroid stimulating hormone subunit beta IEA KEGG rno:05320 NCBI chr 2:192,913,171...192,918,054
Ensembl chr 2:190,224,676...190,229,559 		JBrowse link
G Tshr thyroid stimulating hormone receptor IEA KEGG rno:05320 NCBI chr 6:116,072,321...116,206,009
Ensembl chr 6:110,341,581...110,474,538 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 6091
    disease pathway 1954
      immune system disease pathway 293
        autoimmune thyroiditis pathway 66
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