Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:respiratory system process
go back to main search page
Accession:GO:0003016 term browser browse the term
Definition:A process carried out by the organs or tissues of the respiratory system. The respiratory system is an organ system responsible for respiratory gaseous exchange.
Synonyms:exact_synonym: respiratory gaseous exchange
 alt_id: GO:0010802


show annotations for term's descendants           Sort by:
respiratory system process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adh5 alcohol dehydrogenase 5 (class III), chi polypeptide acts_upstream_of_or_within ISO MGI:3033711 (PMID:15919956) RGD PMID:15919956 NCBI chr 2:226,975,184...226,987,591
Ensembl chr 2:226,947,466...226,987,591 		JBrowse link
G Ap3b1 adaptor related protein complex 3 subunit beta 1 acts_upstream_of_or_within ISO MGI:1333879 (PMID:12777251) RGD PMID:12777251 NCBI chr 2:25,600,069...25,800,937
Ensembl chr 2:25,600,040...25,800,935 		JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 acts_upstream_of_or_within ISO MGI:1856982 (PMID:19381131) RGD PMID:19381131 NCBI chr 3:109,816,397...109,826,528
Ensembl chr 3:109,816,366...109,828,308 		JBrowse link
G Ccbe1 collagen and calcium binding EGF domains 1 acts_upstream_of_or_within ISO MGI:5495674 (PMID:24733830) RGD PMID:24733830 NCBI chr18:59,579,851...59,823,977
Ensembl chr18:59,580,768...59,824,400 		JBrowse link
G Col6a1 collagen type VI alpha 1 chain acts_upstream_of_or_within ISO MGI:2153356 (PMID:19114551) RGD PMID:19114551 NCBI chr20:11,906,105...11,924,599
Ensembl chr20:11,905,957...11,924,597 		JBrowse link
G Ecel1 endothelin converting enzyme-like 1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(MGI:1340780|PMID:10400672)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:10400672 GO_REF:0000024 GO_REF:0000107 MGI:1340780 NCBI chr 9:87,819,516...87,829,154
Ensembl chr 9:87,816,718...87,826,675 		JBrowse link
G Fkrp fukutin related protein acts_upstream_of_or_within ISO MGI:4834518 (PMID:29571322), (PMID:29625576), (PMID:30150693) RGD PMID:29571322 PMID:29625576 PMID:30150693 NCBI chr 1:77,479,641...77,486,954
Ensembl chr 1:77,476,084...77,486,992 		JBrowse link
G Flt4 Fms related receptor tyrosine kinase 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1856694 (PMID:24733830)		 Ensembl
RGD		 PMID:24733830 GO_REF:0000107 NCBI chr10:33,913,725...33,954,770
Ensembl chr10:33,913,608...33,954,770 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 acts_upstream_of_or_within ISO MGI:96160 (PMID:31582725) RGD PMID:31582725 NCBI chr 4:67,439,327...67,619,223
Ensembl chr 4:67,440,501...67,619,223 		JBrowse link
G Hmga1 high mobility group AT-hook 1 acts_upstream_of_or_within ISO MGI:1314872 (PMID:31582725) RGD PMID:31582725 NCBI chr20:5,611,088...5,618,755
Ensembl chr20:5,611,694...5,618,752 		JBrowse link
G Hoxa5 homeo box A5 acts_upstream_of_or_within ISO MGI:2150397 (PMID:9441679) RGD PMID:9441679 NCBI chr 4:81,302,341...81,306,234
Ensembl chr 4:81,302,353...81,306,234 		JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO MGI:2177763 (PMID:12777251) RGD PMID:12777251 NCBI chr 1:241,551,180...241,577,292
Ensembl chr 1:241,551,175...241,577,268 		JBrowse link
G Jag2 jagged canonical Notch ligand 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2657215 (PMID:9531541)		 Ensembl
RGD		 PMID:9531541 GO_REF:0000107 NCBI chr 6:131,983,059...132,005,665
Ensembl chr 6:131,983,056...132,005,818 		JBrowse link
G Kdm6a lysine demethylase 6A acts_upstream_of_or_within ISO MGI:5448825 (PMID:22949634) RGD PMID:22949634 NCBI chr  X:4,337,466...4,477,100
Ensembl chr  X:4,337,750...4,477,062 		JBrowse link
G Ndn necdin, MAGE family member acts_upstream_of_or_within ISO MGI:2653045|MGI:2653048 (PMID:10508517) RGD PMID:10508517 NCBI chr 1:115,849,168...115,850,767
Ensembl chr 1:115,849,105...115,850,767 		JBrowse link
G Ndufs4 NADH:ubiquinone oxidoreductase subunit S4 acts_upstream_of_or_within ISO MGI:3527173 (PMID:28327638) RGD PMID:28327638 NCBI chr 2:45,951,327...46,061,829
Ensembl chr 2:45,951,313...46,061,846 		JBrowse link
G Rab3a RAB3A, member RAS oncogene family involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3762127 (PMID:11359932)		 Ensembl
RGD		 PMID:11359932 GO_REF:0000107 NCBI chr16:18,684,185...18,688,297
Ensembl chr16:18,684,188...18,688,336 		JBrowse link
G Selenon selenoprotein N acts_upstream_of_or_within ISO (PMID:23325319) RGD PMID:23325319 NCBI chr 5:146,748,638...146,764,656
Ensembl chr 5:146,748,652...146,763,059 		JBrowse link
G Stk40 serine/threonine kinase 40 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:5496282 (PMID:23293024)		 Ensembl
RGD		 PMID:23293024 GO_REF:0000107 NCBI chr 5:138,380,049...138,417,802
Ensembl chr 5:138,381,159...138,417,796 		JBrowse link
G Tcf15 transcription factor 15 acts_upstream_of_or_within ISO MGI:1929775 (PMID:8955271) RGD PMID:8955271 NCBI chr 3:140,638,984...140,644,766
Ensembl chr 3:140,638,984...140,644,766 		JBrowse link
G Ywhaz tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta involved_in IEA
ISO		 GO_REF:0000107
(PMID:29118970)		 Ensembl
RGD		 PMID:29118970 GO_REF:0000107 NCBI chr 7:67,941,353...67,963,651
Ensembl chr 7:67,940,017...67,963,668 		JBrowse link
G Zfand5 zinc finger AN1-type containing 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3526860 (PMID:17143286)		 Ensembl
RGD		 PMID:17143286 GO_REF:0000107 NCBI chr 1:218,765,735...218,780,391
Ensembl chr 1:218,766,614...218,775,843 		JBrowse link
diaphragm contraction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adrb2 adrenoceptor beta 2 IDA RGD PMID:17362795 RGD:4145100 NCBI chr18:55,642,459...55,644,501
Ensembl chr18:55,502,903...55,644,512 		JBrowse link
G Gaa alpha glucosidase involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:16917947)
MGI:2148550 (PMID:15169761)
GO_REF:0000107		 RGD
Ensembl		 PMID:15169761 PMID:16917947 GO_REF:0000107 NCBI chr10:104,529,673...104,546,836
Ensembl chr10:104,529,747...104,546,836 		JBrowse link
G Tnnc1 troponin C1, slow skeletal and cardiac type IDA RGD PMID:14985239 RGD:1598612 NCBI chr16:6,400,801...6,405,634
Ensembl chr16:6,402,171...6,405,634 		JBrowse link
mucociliary clearance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc88c coiled-coil domain containing 88C acts_upstream_of_or_within ISO (PMID:33929515) RGD PMID:33929515 NCBI chr 6:120,169,752...120,289,459
Ensembl chr 6:120,169,738...120,289,555 		JBrowse link
G Cfap221 cilia and flagella associated protein 221 acts_upstream_of_or_within ISO MGI:1922208|MGI:2443727|MGI:3608909 (PMID:18039845), (PMID:24360193), (PMID:32704025) RGD PMID:18039845 PMID:24360193 PMID:32704025 NCBI chr13:31,046,550...31,118,141
Ensembl chr13:31,046,535...31,116,899 		JBrowse link
G Cfap43 cilia and flagella associated protein 43 acts_upstream_of_or_within ISO MGI:6431400 (PMID:31884020) RGD PMID:31884020 NCBI chr 1:246,625,259...246,712,438
Ensembl chr 1:246,625,262...246,712,443 		JBrowse link
G Cfap54 cilia and flagella associated protein 54 acts_upstream_of_or_within ISO MGI:2443727|MGI:2684947 (PMID:32704025) RGD PMID:32704025 NCBI chr 7:27,316,498...27,601,630
Ensembl chr 7:27,316,502...27,602,144 		JBrowse link
G Dnah9 dynein, axonemal, heavy chain 9 acts_upstream_of_or_within ISO MGI:6720876 (PMID:33347437) RGD PMID:33347437 NCBI chr10:50,496,174...50,864,909
Ensembl chr10:50,497,688...50,864,949 		JBrowse link
G Nek10 NIMA-related kinase 10 involved_in ISO (PMID:31959991) RGD PMID:31959991 NCBI chr15:10,387,063...10,564,177
Ensembl chr15:10,381,140...10,559,722 		JBrowse link
G Odad4 outer dynein arm docking complex subunit 4 involved_in ISO (PMID:27486780) RGD PMID:27486780 NCBI chr10:85,480,089...85,508,603
Ensembl chr10:85,480,094...85,508,603 		JBrowse link
G Spag16 sperm associated antigen 16 acts_upstream_of_or_within ISO MGI:1354388 (PMID:17323374) RGD PMID:17323374 NCBI chr 9:71,333,005...72,252,772
Ensembl chr 9:71,332,992...72,252,708 		JBrowse link
G Spag6l sperm associated antigen 6-like acts_upstream_of_or_within ISO MGI:1913972 (PMID:17323374) RGD PMID:17323374 NCBI chr11:84,173,628...84,269,374
Ensembl chr11:84,173,526...84,269,364 		JBrowse link
G Spef2 sperm flagellar 2 acts_upstream_of_or_within ISO MGI:1922208|MGI:2684947|MGI:5295267 (PMID:24360193), (PMID:32704025) RGD PMID:24360193 PMID:32704025 NCBI chr 2:58,512,489...58,694,718
Ensembl chr 2:58,512,489...58,694,664 		JBrowse link
G Stard7 StAR-related lipid transfer domain containing 7 acts_upstream_of_or_within ISO MGI:4433666 (PMID:25980009) RGD PMID:25980009 NCBI chr 3:114,487,161...114,515,828
Ensembl chr 3:114,485,600...114,515,813 		JBrowse link
G Ttll1 TTL family tubulin polyglutamylase complex subunit L1 acts_upstream_of_or_within ISO MGI:4461777 (PMID:29440671) RGD PMID:29440671 NCBI chr 7:114,619,509...114,648,850
Ensembl chr 7:114,619,508...114,648,761 		JBrowse link
G Vangl1 VANGL planar cell polarity protein 1 acts_upstream_of_or_within ISO (PMID:33929515) RGD PMID:33929515 NCBI chr 2:189,586,681...189,637,609
Ensembl chr 2:189,589,229...189,637,619 		JBrowse link
regulation of respiratory gaseous exchange by nervous system process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adora1 adenosine A1 receptor IMP downregulates hypoxia-induced hyperventilation RGD PMID:16352472 RGD:1625230 NCBI chr13:45,658,872...45,695,821
Ensembl chr13:45,658,872...45,695,801 		JBrowse link
G Atp1a2 ATPase Na+/K+ transporting subunit alpha 2 acts_upstream_of_or_within ISO MGI:2451291|MGI:3522421 (PMID:12458206), (PMID:15564586) RGD PMID:12458206 PMID:15564586 NCBI chr13:84,729,597...84,754,544
Ensembl chr13:84,729,601...84,754,544 		JBrowse link
G Cc2d1a coiled-coil and C2 domain containing 1A involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2176173|MGI:6458916 (PMID:26720614)		 Ensembl
RGD		 PMID:26720614 GO_REF:0000107 NCBI chr19:24,011,897...24,026,937
Ensembl chr19:24,011,938...24,026,936 		JBrowse link
G Glra1 glycine receptor, alpha 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1856362 (PMID:16800867)		 Ensembl
RGD		 PMID:16800867 GO_REF:0000107 NCBI chr10:39,625,853...39,727,897
Ensembl chr10:39,629,459...39,727,162 		JBrowse link
G Gls glutaminase involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3514104 (PMID:16641247)		 Ensembl
RGD		 PMID:16641247 GO_REF:0000107 NCBI chr 9:49,344,616...49,416,900
Ensembl chr 9:49,344,781...49,416,900 		JBrowse link
G Gsx2 GS homeobox 2 acts_upstream_of_or_within ISO MGI:2150162 (PMID:9398437) RGD PMID:9398437 NCBI chr14:33,123,799...33,126,151
Ensembl chr14:33,124,381...33,126,105 		JBrowse link
G Mecp2 methyl CpG binding protein 2 acts_upstream_of_or_within ISO MGI:2137311|MGI:2137555 (PMID:16354910), (PMID:18321864) RGD PMID:16354910 PMID:18321864 NCBI chr  X:151,781,177...151,844,687
Ensembl chr  X:151,789,930...151,844,689 		JBrowse link
G Nlgn1 neuroligin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2444609 (PMID:16982420)		 Ensembl
RGD		 PMID:16982420 GO_REF:0000107 NCBI chr 2:108,256,236...109,181,530
Ensembl chr 2:108,257,824...109,002,464 		JBrowse link
G Nlgn2 neuroligin 2 involved_in
acts_upstream_of_or_within		 ISS
ISO
IEA		 GO_REF:0000024
MGI:2444609 (PMID:16982420)
GO_REF:0000107		 BHF-UCL
RGD
Ensembl		 PMID:16982420 GO_REF:0000024 GO_REF:0000107 NCBI chr10:54,544,461...54,557,854
Ensembl chr10:54,544,588...54,558,434 		JBrowse link
G Nlgn3 neuroligin 3 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:2179435|MGI:2681835 (PMID:16982420)		 BHF-UCL
RGD		 PMID:16982420 GO_REF:0000024 NCBI chr  X:66,427,926...66,457,378
Ensembl chr  X:66,429,458...66,451,876 		JBrowse link
G Pbx3 PBX homeobox 3 acts_upstream_of_or_within ISO MGI:3510441 (PMID:15527896) RGD PMID:15527896 NCBI chr 3:17,488,691...17,682,412
Ensembl chr 3:17,488,693...17,682,791 		JBrowse link
G Phox2b paired-like homeobox 2b involved_in ISO (MGI:4418003|PMID:19940179) RGD PMID:19940179 MGI:4418003 NCBI chr14:41,066,012...41,069,202
Ensembl chr14:41,066,264...41,068,978 		JBrowse link
G Tlx3 T-cell leukemia, homeobox 3 acts_upstream_of_or_within ISO MGI:2180105 (PMID:15527896) RGD PMID:15527896 NCBI chr10:17,789,706...17,792,207
Ensembl chr10:17,790,053...17,792,207 		JBrowse link
G Tshz3 teashirt zinc finger homeobox 3 involved_in ISS
ISO		 GO_REF:0000024
(MGI:4819308|PMID:20631175)		 UniProt
RGD		 PMID:20631175 GO_REF:0000024 MGI:4819308 NCBI chr 1:89,386,732...89,460,719
Ensembl chr 1:89,381,858...89,460,874 		JBrowse link
regulation of respiratory system process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fto FTO, alpha-ketoglutarate dependent dioxygenase involved_in IEA
ISO		 GO_REF:0000107
(MGI:3840763|PMID:19234441)		 Ensembl
RGD		 PMID:19234441 GO_REF:0000107 MGI:3840763 NCBI chr19:15,284,898...15,692,142
Ensembl chr19:15,349,696...15,692,083 		JBrowse link
G Mtg1 mitochondrial ribosome-associated GTPase 1 involved_in ISO (PMID:23396448) RGD PMID:23396448 NCBI chr 1:194,931,543...194,944,278
Ensembl chr 1:194,931,531...194,944,277 		JBrowse link
G Mtg2 mitochondrial ribosome-associated GTPase 2 involved_in ISO (PMID:23396448) RGD PMID:23396448 NCBI chr 3:167,165,542...167,181,358
Ensembl chr 3:167,165,982...167,181,358 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19870
    multicellular organismal process 8843
      respiratory gaseous exchange by respiratory system 82
        respiratory system process 55
          diaphragm contraction 3
          mucociliary clearance 13
          regulation of respiratory system process + 17
paths to the root