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ONTOLOGY REPORT - ANNOTATIONS


Term:respiratory system process
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Accession:GO:0003016 term browser browse the term
Definition:A process carried out by the organs or tissues of the respiratory system. The respiratory system is an organ system responsible for respiratory gaseous exchange.
Synonyms:exact_synonym: respiratory gaseous exchange
 alt_id: GO:0010802


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respiratory system process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adh5 alcohol dehydrogenase 5 (class III), chi polypeptide acts_upstream_of_or_within ISO MGI:3033711 (MGI:3616157|PMID:15919956) RGD PMID:15919956 MGI:3616157 NCBI chr 2:226,975,184...226,987,591 JBrowse link
G Ap3b1 adaptor related protein complex 3 subunit beta 1 acts_upstream_of_or_within ISO MGI:1333879 (MGI:2675181|PMID:12777251) RGD PMID:12777251 MGI:2675181 NCBI chr 2:25,600,069...25,800,937
Ensembl chr 2:25,600,040...25,800,935
JBrowse link
G Ccbe1 collagen and calcium binding EGF domains 1 acts_upstream_of_or_within ISO MGI:5495674 (MGI:5582954|PMID:24733830) RGD PMID:24733830 MGI:5582954 NCBI chr18:59,579,851...59,823,977 JBrowse link
G Ecel1 endothelin converting enzyme-like 1 involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:1340780|PMID:10400672)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:10400672 GO_REF:0000024 GO_REF:0000107 MGI:1340780 NCBI chr 9:87,814,434...87,829,154
Ensembl chr 9:87,816,718...87,826,675
JBrowse link
G Flt4 Fms related receptor tyrosine kinase 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1856694 (MGI:5582954|PMID:24733830)
Ensembl
RGD
PMID:24733830 GO_REF:0000107 MGI:5582954 NCBI chr10:33,913,725...33,954,770
Ensembl chr10:33,913,608...33,954,770
JBrowse link
G Hoxa5 homeo box A5 acts_upstream_of_or_within ISO MGI:2150397 (MGI:1195049|PMID:9441679) RGD PMID:9441679 MGI:1195049 NCBI chr 4:81,302,341...81,306,234
Ensembl chr 4:81,302,353...81,306,234
JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO MGI:2177763 (MGI:2675181|PMID:12777251) RGD PMID:12777251 MGI:2675181 NCBI chr 1:241,551,180...241,577,292
Ensembl chr 1:241,551,175...241,577,268
JBrowse link
G Jag2 jagged canonical Notch ligand 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2657215 (MGI:1202245|PMID:9531541)
Ensembl
RGD
PMID:9531541 GO_REF:0000107 MGI:1202245 NCBI chr 6:131,983,056...132,005,359
Ensembl chr 6:131,983,056...132,005,818
JBrowse link
G Kdm6a lysine demethylase 6A acts_upstream_of_or_within ISO MGI:5448825 (MGI:5448135|PMID:22949634) RGD PMID:22949634 MGI:5448135 NCBI chr  X:4,337,466...4,477,100
Ensembl chr  X:4,337,750...4,477,062
JBrowse link
G Ndn necdin, MAGE family member acts_upstream_of_or_within ISO MGI:2653045|MGI:2653048 (MGI:1345919|PMID:10508517) RGD PMID:10508517 MGI:1345919 NCBI chr 1:115,849,168...115,850,767
Ensembl chr 1:115,849,105...115,850,767
JBrowse link
G Ndufs4 NADH:ubiquinone oxidoreductase subunit S4 acts_upstream_of_or_within ISO MGI:3527173 (MGI:6150107|PMID:28327638) RGD PMID:28327638 MGI:6150107 NCBI chr 2:45,951,327...46,061,829
Ensembl chr 2:45,951,313...46,061,846
JBrowse link
G Rab3a RAB3A, member RAS oncogene family acts_upstream_of_or_within ISO MGI:3762127 (MGI:3762126|PMID:11359932) RGD PMID:11359932 MGI:3762126 NCBI chr16:18,684,185...18,688,297
Ensembl chr16:18,684,188...18,688,336
JBrowse link
G Selenon selenoprotein N acts_upstream_of_or_within ISO (MGI:5494499|PMID:23325319) RGD PMID:23325319 MGI:5494499 NCBI chr 5:146,748,638...146,764,656
Ensembl chr 5:146,748,652...146,763,059
JBrowse link
G Stk40 serine/threonine kinase 40 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:5496282 (MGI:5486391|PMID:23293024)
Ensembl
RGD
PMID:23293024 GO_REF:0000107 MGI:5486391 NCBI chr 5:138,380,049...138,417,802
Ensembl chr 5:138,381,159...138,417,796
JBrowse link
G Tcf15 transcription factor 15 acts_upstream_of_or_within ISO MGI:1929775 (MGI:84545|PMID:8955271) RGD PMID:8955271 MGI:84545 NCBI chr 3:140,638,984...140,644,766
Ensembl chr 3:140,638,984...140,644,766
JBrowse link
G Ywhaz tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta involved_in IEA
ISO
GO_REF:0000107
(MGI:6109167|PMID:29118970)
Ensembl
RGD
PMID:29118970 GO_REF:0000107 MGI:6109167 NCBI chr 7:67,941,353...67,963,651
Ensembl chr 7:67,940,017...67,963,668
JBrowse link
G Zfand5 zinc finger AN1-type containing 5 acts_upstream_of_or_within ISO MGI:3526860 (MGI:3696608|PMID:17143286) RGD PMID:17143286 MGI:3696608 NCBI chr 1:218,765,735...218,776,118
Ensembl chr 1:218,766,614...218,775,843
JBrowse link
diaphragm contraction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adrb2 adrenoceptor beta 2 IDA RGD PMID:17362795 RGD:4145100 NCBI chr18:55,642,459...55,644,501
Ensembl chr18:55,502,903...55,644,512
JBrowse link
G Gaa alpha glucosidase involved_in
acts_upstream_of_or_within
ISO
IEA
(PMID:16917947)
MGI:2148550 (MGI:3618942|PMID:15169761)
GO_REF:0000107
RGD
Ensembl
PMID:15169761 PMID:16917947 GO_REF:0000107 MGI:3618942 NCBI chr10:104,529,673...104,546,836
Ensembl chr10:104,529,747...104,546,836
JBrowse link
G Tnnc1 troponin C1, slow skeletal and cardiac type IDA RGD PMID:14985239 RGD:1598612 NCBI chr16:6,400,801...6,405,419
Ensembl chr16:6,402,171...6,405,634
JBrowse link
mucociliary clearance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cfap221 cilia and flagella associated protein 221 acts_upstream_of_or_within ISO MGI:1922208|MGI:2443727|MGI:3608909 (MGI:3771635|PMID:18039845), (MGI:5550178|PMID:24360193), (MGI:6453448|PMID:32704025) RGD PMID:18039845 PMID:24360193 PMID:32704025 MGI:3771635 MGI:5550178 MGI:6453448 NCBI chr13:31,046,550...31,118,141
Ensembl chr13:31,046,535...31,116,899
JBrowse link
G Cfap43 cilia and flagella associated protein 43 acts_upstream_of_or_within ISO MGI:6431400 (MGI:6402702|PMID:31884020) RGD PMID:31884020 MGI:6402702 NCBI chr 1:246,625,259...246,712,438
Ensembl chr 1:246,625,262...246,712,443
JBrowse link
G Cfap54 cilia and flagella associated protein 54 acts_upstream_of_or_within ISO MGI:2443727|MGI:2684947 (MGI:6453448|PMID:32704025) RGD PMID:32704025 MGI:6453448
G Dnah9 dynein, axonemal, heavy chain 9 acts_upstream_of_or_within ISO MGI:6720876 (MGI:6503922|PMID:33347437) RGD PMID:33347437 MGI:6503922 NCBI chr10:50,496,174...50,864,909
Ensembl chr10:50,497,688...50,864,949
JBrowse link
G Nek10 NIMA-related kinase 10 involved_in ISO (PMID:31959991) RGD PMID:31959991 NCBI chr15:10,387,063...10,564,177
Ensembl chr15:10,381,140...10,559,722
JBrowse link
G Odad4 outer dynein arm docking complex subunit 4 involved_in ISO (PMID:27486780) RGD PMID:27486780 NCBI chr10:85,480,089...85,508,603
Ensembl chr10:85,480,094...85,508,603
JBrowse link
G Spag16 sperm associated antigen 16 acts_upstream_of_or_within ISO MGI:1354388 (MGI:6274126|PMID:17323374) RGD PMID:17323374 MGI:6274126 NCBI chr 9:71,333,005...72,252,772 JBrowse link
G Spag6l sperm associated antigen 6-like acts_upstream_of_or_within ISO MGI:1913972 (MGI:6274126|PMID:17323374) RGD PMID:17323374 MGI:6274126 NCBI chr11:84,173,628...84,269,374
Ensembl chr11:84,173,526...84,269,364
JBrowse link
G Spef2 sperm flagellar 2 acts_upstream_of_or_within ISO MGI:1922208|MGI:2684947|MGI:5295267 (MGI:5550178|PMID:24360193), (MGI:6453448|PMID:32704025) RGD PMID:24360193 PMID:32704025 MGI:5550178 MGI:6453448 NCBI chr 2:58,512,489...58,694,718
Ensembl chr 2:58,512,489...58,694,664
JBrowse link
G Stard7 StAR-related lipid transfer domain containing 7 acts_upstream_of_or_within ISO MGI:4433666 (MGI:5906122|PMID:25980009) RGD PMID:25980009 MGI:5906122 NCBI chr 3:114,487,163...114,515,825
Ensembl chr 3:114,485,600...114,515,813
JBrowse link
G Ttll1 tubulin tyrosine ligase like 1 acts_upstream_of_or_within ISO MGI:4461777 (MGI:6162909|PMID:29440671) RGD PMID:29440671 MGI:6162909 NCBI chr 7:114,619,509...114,648,850
Ensembl chr 7:114,619,508...114,648,761
JBrowse link
regulation of respiratory gaseous exchange by nervous system process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adora1 adenosine A1 receptor IMP downregulates hypoxia-induced hyperventilation RGD PMID:16352472 RGD:1625230 NCBI chr13:45,658,872...45,695,821
Ensembl chr13:45,658,872...45,695,801
JBrowse link
G Atp1a2 ATPase Na+/K+ transporting subunit alpha 2 acts_upstream_of_or_within ISO MGI:2451291|MGI:3522421 (MGI:2450206|PMID:12458206), (MGI:3521550|PMID:15564586) RGD PMID:12458206 PMID:15564586 MGI:2450206 MGI:3521550 NCBI chr13:84,729,597...84,754,544
Ensembl chr13:84,729,601...84,754,544
JBrowse link
G Glra1 glycine receptor, alpha 1 acts_upstream_of_or_within ISO MGI:1856362 (MGI:3654385|PMID:16800867) RGD PMID:16800867 MGI:3654385 NCBI chr10:39,625,853...39,727,897
Ensembl chr10:39,629,459...39,727,162
JBrowse link
G Gls glutaminase involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3514104 (MGI:3623875|PMID:16641247)
Ensembl
RGD
PMID:16641247 GO_REF:0000107 MGI:3623875 NCBI chr 9:49,344,616...49,416,900
Ensembl chr 9:49,344,781...49,416,900
JBrowse link
G Gsx2 GS homeobox 2 acts_upstream_of_or_within ISO MGI:2150162 (MGI:1099899|PMID:9398437) RGD PMID:9398437 MGI:1099899 NCBI chr14:33,123,799...33,126,151
Ensembl chr14:33,124,381...33,126,105
JBrowse link
G Mecp2 methyl CpG binding protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2137311|MGI:2137555 (MGI:3611090|PMID:16354910), (MGI:3794508|PMID:18321864)
Ensembl
RGD
PMID:16354910 PMID:18321864 GO_REF:0000107 MGI:3611090 MGI:3794508 NCBI chr  X:151,781,177...151,844,687
Ensembl chr  X:151,789,930...151,844,689
JBrowse link
G Nlgn1 neuroligin 1 acts_upstream_of_or_within ISO MGI:2444609 (MGI:3687386|PMID:16982420) RGD PMID:16982420 MGI:3687386 NCBI chr 2:108,256,236...109,181,530
Ensembl chr 2:108,257,824...109,002,464
JBrowse link
G Nlgn2 neuroligin 2 involved_in
acts_upstream_of_or_within
ISS
ISO
IEA
GO_REF:0000024
MGI:2444609 (MGI:3687386|PMID:16982420)
GO_REF:0000107
BHF-UCL
RGD
Ensembl
PMID:16982420 GO_REF:0000024 GO_REF:0000107 MGI:3687386 NCBI chr10:54,544,588...54,557,854
Ensembl chr10:54,544,588...54,558,434
JBrowse link
G Nlgn3 neuroligin 3 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:2179435|MGI:2681835 (MGI:3687386|PMID:16982420)
BHF-UCL
RGD
PMID:16982420 GO_REF:0000024 MGI:3687386 NCBI chr  X:66,427,926...66,457,378
Ensembl chr  X:66,429,458...66,451,876
JBrowse link
G Pbx3 PBX homeobox 3 acts_upstream_of_or_within ISO MGI:3510441 (MGI:3626029|PMID:15527896) RGD PMID:15527896 MGI:3626029 NCBI chr 3:17,488,691...17,682,412
Ensembl chr 3:17,488,693...17,682,791
JBrowse link
G Phox2b paired-like homeobox 2b involved_in ISO (MGI:4418003|PMID:19940179) RGD PMID:19940179 MGI:4418003 NCBI chr14:41,066,012...41,069,202
Ensembl chr14:41,066,264...41,068,978
JBrowse link
G Tlx3 T-cell leukemia, homeobox 3 acts_upstream_of_or_within ISO MGI:2180105 (MGI:3626029|PMID:15527896) RGD PMID:15527896 MGI:3626029 NCBI chr10:17,789,706...17,792,207
Ensembl chr10:17,790,053...17,792,207
JBrowse link
G Tshz3 teashirt zinc finger homeobox 3 involved_in ISS
ISO
GO_REF:0000024
(MGI:4819308|PMID:20631175)
UniProt
RGD
PMID:20631175 GO_REF:0000024 MGI:4819308 NCBI chr 1:89,386,732...89,460,719
Ensembl chr 1:89,381,858...89,460,874
JBrowse link
regulation of respiratory system process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fto FTO, alpha-ketoglutarate dependent dioxygenase involved_in IEA
ISO
GO_REF:0000107
(MGI:3840763|PMID:19234441)
Ensembl
RGD
PMID:19234441 GO_REF:0000107 MGI:3840763 NCBI chr19:15,284,898...15,692,142
Ensembl chr19:15,349,696...15,692,083
JBrowse link
G Mtg1 mitochondrial ribosome-associated GTPase 1 involved_in ISO (PMID:23396448) RGD PMID:23396448 NCBI chr 1:194,931,543...194,944,278
Ensembl chr 1:194,931,531...194,944,277
JBrowse link
G Mtg2 mitochondrial ribosome-associated GTPase 2 involved_in ISO (PMID:23396448) RGD PMID:23396448 NCBI chr 3:167,165,542...167,181,358
Ensembl chr 3:167,165,982...167,181,358
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19492
    multicellular organismal process 8823
      respiratory gaseous exchange by respiratory system 70
        respiratory system process 47
          diaphragm contraction 3
          modulation by symbiont of host respiratory system process 0
          mucociliary clearance 11
          regulation of respiratory system process + 16
paths to the root