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ONTOLOGY REPORT - ANNOTATIONS

Term:respiratory system process
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Accession:GO:0003016 term browser browse the term
Definition:A process carried out by the organs or tissues of the respiratory system. The respiratory system is an organ system responsible for respiratory gaseous exchange.
Synonyms:exact_synonym: respiratory gaseous exchange
 alt_id: GO:0010802


show annotations for term's descendants           Sort by:
respiratory system process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adh4 alcohol dehydrogenase 4 (class II), pi polypeptide acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 2:229,622,092...229,640,120
Ensembl chr 2:226,947,466...226,987,591 		JBrowse link
G Adh5 alcohol dehydrogenase 5 (class III), chi polypeptide acts_upstream_of_or_within ISO
IEA 		MGI:3033711 (PMID:15919956)
GO_REF:0000107 		RGD
Ensembl		 PMID:15919956 GO_REF:0000107 NCBI chr 2:229,648,557...229,660,964
Ensembl chr 2:226,947,466...226,987,591 		JBrowse link
G Ap3b1 adaptor related protein complex 3 subunit beta 1 acts_upstream_of_or_within ISO MGI:1333879 (PMID:12777251) RGD PMID:12777251 NCBI chr 2:27,331,241...27,535,683
Ensembl chr 2:25,600,040...25,800,935 		JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 acts_upstream_of_or_within ISO
IEA 		MGI:1856982 (PMID:19381131)
GO_REF:0000107 		RGD
Ensembl		 PMID:19381131 GO_REF:0000107 NCBI chr 3:109,816,397...109,826,528
Ensembl chr 3:109,816,366...109,828,308 		JBrowse link
G Ccbe1 collagen and calcium binding EGF domains 1 acts_upstream_of_or_within ISO
IEA 		MGI:5495674 (PMID:24733830)
GO_REF:0000107 		RGD
Ensembl		 PMID:24733830 GO_REF:0000107 NCBI chr18:59,579,851...59,823,977
Ensembl chr18:59,580,768...59,824,400 		JBrowse link
G Col6a1 collagen type VI alpha 1 chain acts_upstream_of_or_within ISO
IEA 		MGI:2153356 (PMID:19114551)
GO_REF:0000107 		RGD
Ensembl		 PMID:19114551 GO_REF:0000107 NCBI chr20:11,906,105...11,924,599
Ensembl chr20:11,905,957...11,924,597 		JBrowse link
G Dcaf11 DDB1 and CUL4 associated factor 11 acts_upstream_of_or_within ISO
IEA 		(PMID:38301772)
GO_REF:0000107 		RGD
Ensembl		 PMID:38301772 GO_REF:0000107 NCBI chr15:29,046,744...29,057,450
Ensembl chr15:29,046,826...29,057,669 		JBrowse link
G Ecel1 endothelin converting enzyme-like 1 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:10400672) 		UniProt
Ensembl
RGD		 PMID:10400672 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:87,819,516...87,829,154
Ensembl chr 9:87,816,718...87,826,675 		JBrowse link
G Fkrp fukutin related protein acts_upstream_of_or_within ISO MGI:4834518 (PMID:29571322), (PMID:29625576), (PMID:30150693) RGD PMID:29571322 PMID:29625576 PMID:30150693 NCBI chr 1:86,607,769...86,615,045
Ensembl chr 1:77,476,084...77,486,992 		JBrowse link
G Flt4 Fms related receptor tyrosine kinase 4 acts_upstream_of_or_within ISO
IEA 		MGI:1856694 (PMID:24733830)
GO_REF:0000107 		RGD
Ensembl		 PMID:24733830 GO_REF:0000107 NCBI chr10:33,913,725...33,954,770
Ensembl chr10:33,913,608...33,954,770 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 acts_upstream_of_or_within ISO MGI:96160 (PMID:31582725) RGD PMID:31582725 NCBI chr 4:68,399,358...68,586,404
Ensembl chr 4:67,440,501...67,619,223 		JBrowse link
G Hmga1 high mobility group AT-hook 1 acts_upstream_of_or_within ISO MGI:1314872 (PMID:31582725) RGD PMID:31582725 NCBI chr20:5,612,902...5,620,596
Ensembl chr20:5,611,694...5,618,752 		JBrowse link
G Hoxa5 homeo box A5 acts_upstream_of_or_within ISO MGI:2150397 (PMID:9441679) RGD PMID:9441679 NCBI chr 4:82,632,958...82,636,851
Ensembl chr 4:81,302,353...81,306,234 		JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO MGI:2177763 (PMID:12777251) RGD PMID:12777251 NCBI chr 1:241,551,180...241,577,292
Ensembl chr 1:241,551,175...241,577,268 		JBrowse link
G Jag2 jagged canonical Notch ligand 2 acts_upstream_of_or_within ISO
IEA 		MGI:2657215 (PMID:9531541)
GO_REF:0000107 		RGD
Ensembl		 PMID:9531541 GO_REF:0000107 NCBI chr 6:137,804,133...137,826,738
Ensembl chr 6:131,983,056...132,005,818 		JBrowse link
G Kdm6a lysine demethylase 6A acts_upstream_of_or_within ISO
IEA 		MGI:5448825 (PMID:22949634)
GO_REF:0000107 		RGD
Ensembl		 PMID:22949634 GO_REF:0000107 NCBI chr  X:4,337,466...4,477,100
Ensembl chr  X:4,337,750...4,477,062 		JBrowse link
G Ndn necdin, MAGE family member acts_upstream_of_or_within ISO
IEA 		MGI:2653045|MGI:2653048 (PMID:10508517)
GO_REF:0000107 		RGD
Ensembl		 PMID:10508517 GO_REF:0000107 NCBI chr 1:115,849,168...115,850,767
Ensembl chr 1:115,849,105...115,850,767 		JBrowse link
G Ndufs4 NADH:ubiquinone oxidoreductase subunit S4 acts_upstream_of_or_within ISO MGI:3527173 (PMID:28327638) RGD PMID:28327638 NCBI chr 2:47,684,420...47,794,914
Ensembl chr 2:45,951,313...46,061,846 		JBrowse link
G Rab3a RAB3A, member RAS oncogene family acts_upstream_of_or_within ISO
IEA 		MGI:3762127 (PMID:11359932)
GO_REF:0000107 		RGD
Ensembl		 PMID:11359932 GO_REF:0000107 NCBI chr16:18,718,164...18,722,273
Ensembl chr16:18,684,188...18,688,336 		JBrowse link
G Selenon selenoprotein N acts_upstream_of_or_within ISO
IEA 		(PMID:23325319)
GO_REF:0000107 		RGD
Ensembl		 PMID:23325319 GO_REF:0000107 NCBI chr 5:146,748,638...146,764,656
Ensembl chr 5:146,748,652...146,763,059 		JBrowse link
G Stk40 serine/threonine kinase 40 acts_upstream_of_or_within ISO
IEA 		MGI:5496282 (PMID:23293024)
GO_REF:0000107 		RGD
Ensembl		 PMID:23293024 GO_REF:0000107 NCBI chr 5:138,380,049...138,417,802
Ensembl chr 5:138,381,159...138,417,796 		JBrowse link
G Tcf15 transcription factor 15 acts_upstream_of_or_within ISO
IEA 		MGI:1929775 (PMID:8955271)
GO_REF:0000107 		RGD
Ensembl		 PMID:8955271 GO_REF:0000107 NCBI chr 3:140,638,984...140,644,766
Ensembl chr 3:140,638,984...140,644,766 		JBrowse link
G Ywhaz tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta involved_in IEA
ISO 		GO_REF:0000107
(PMID:29118970) 		Ensembl
RGD		 PMID:29118970 GO_REF:0000107 NCBI chr 7:67,941,353...67,963,651
Ensembl chr 7:67,940,017...67,963,668 		JBrowse link
G Zfand5 zinc finger AN1-type containing 5 acts_upstream_of_or_within ISO
IEA 		MGI:3526860 (PMID:17143286)
GO_REF:0000107 		RGD
Ensembl		 PMID:17143286 GO_REF:0000107 NCBI chr 1:218,765,735...218,780,391
Ensembl chr 1:218,766,614...218,775,843 		JBrowse link
diaphragm contraction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adrb2 adrenoceptor beta 2 IDA RGD PMID:17362795 RGD:4145100 NCBI chr18:57,912,760...57,914,802
Ensembl chr18:55,502,903...55,644,512 		JBrowse link
G Ddit3 DNA-damage inducible transcript 3 acts_upstream_of_or_within ISO
IEA 		MGI:2151208 (PMID:30391828)
GO_REF:0000107 		RGD
Ensembl		 PMID:30391828 GO_REF:0000107 NCBI chr 7:65,001,695...65,006,517
Ensembl chr 7:63,116,380...63,121,201 		JBrowse link
G Gaa alpha glucosidase involved_in
acts_upstream_of_or_within 		ISO (PMID:16917947)
MGI:2148550 (PMID:15169761) 		RGD PMID:15169761 PMID:16917947 NCBI chr10:104,529,673...104,546,836
Ensembl chr10:104,529,747...104,546,836 		JBrowse link
G Selenon selenoprotein N acts_upstream_of_or_within ISO
IEA 		MGI:109247 (PMID:30391828)
GO_REF:0000107 		RGD
Ensembl		 PMID:30391828 GO_REF:0000107 NCBI chr 5:146,748,638...146,764,656
Ensembl chr 5:146,748,652...146,763,059 		JBrowse link
G Tnnc1 troponin C1, slow skeletal and cardiac type IDA RGD PMID:14985239 RGD:1598612 NCBI chr16:6,400,801...6,405,634
Ensembl chr16:6,402,171...6,405,634 		JBrowse link
mucociliary clearance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc88c coiled-coil domain containing 88C acts_upstream_of_or_within ISO
IEA 		(PMID:33929515)
GO_REF:0000107 		RGD
Ensembl		 PMID:33929515 GO_REF:0000107 NCBI chr 6:125,899,337...126,019,162
Ensembl chr 6:120,169,738...120,289,555 		JBrowse link
G Cfap221 cilia and flagella associated protein 221 acts_upstream_of_or_within ISO
IEA 		MGI:1922208|MGI:2443727|MGI:3608909 (PMID:18039845), (PMID:24360193), (PMID:32704025)
GO_REF:0000107 		RGD
Ensembl		 PMID:18039845 PMID:24360193 PMID:32704025 GO_REF:0000107 NCBI chr13:31,046,550...31,118,141
Ensembl chr13:31,046,535...31,116,899 		JBrowse link
G Cfap43 cilia and flagella associated protein 43 acts_upstream_of_or_within ISO
IEA 		MGI:6431400 (PMID:31884020)
GO_REF:0000107 		RGD
Ensembl		 PMID:31884020 GO_REF:0000107 NCBI chr 1:246,625,259...246,712,438
Ensembl chr 1:246,625,262...246,712,443 		JBrowse link
G Cfap54 cilia and flagella associated protein 54 acts_upstream_of_or_within ISO
IEA 		MGI:2443727|MGI:2684947 (PMID:32704025)
GO_REF:0000107 		RGD
Ensembl		 PMID:32704025 GO_REF:0000107 NCBI chr 7:27,316,498...27,601,630
Ensembl chr 7:27,316,502...27,602,144 		JBrowse link
G Dnah9 dynein, axonemal, heavy chain 9 acts_upstream_of_or_within ISO
IEA 		MGI:6720876 (PMID:33347437)
GO_REF:0000107 		RGD
Ensembl		 PMID:33347437 GO_REF:0000107 NCBI chr10:50,496,174...50,864,909
Ensembl chr10:50,497,688...50,864,949 		JBrowse link
G Drc1 dynein regulatory complex subunit 1 acts_upstream_of ISO
IEA 		MGI:7294419|MGI:7294420 (PMID:34169321)
GO_REF:0000107 		RGD
Ensembl		 PMID:34169321 GO_REF:0000107 NCBI chr 6:26,025,004...26,059,438
Ensembl chr 6:26,025,005...26,059,414 		JBrowse link
G Nek10 NIMA-related kinase 10 involved_in ISO (PMID:31959991) RGD PMID:31959991 NCBI chr15:10,387,063...10,564,177
Ensembl chr15:10,381,140...10,559,722 		JBrowse link
G Odad4 outer dynein arm docking complex subunit 4 involved_in ISO
IEA 		(PMID:27486780)
GO_REF:0000107 		RGD
Ensembl		 PMID:27486780 GO_REF:0000107 NCBI chr10:85,480,089...85,508,603
Ensembl chr10:85,480,094...85,508,603 		JBrowse link
G Spag16 sperm associated antigen 16 acts_upstream_of_or_within ISO MGI:1354388 (PMID:17323374) RGD PMID:17323374 NCBI chr 9:71,333,005...72,252,772
Ensembl chr 9:71,332,992...72,252,708 		JBrowse link
G Spag6l sperm associated antigen 6-like acts_upstream_of_or_within ISO
IEA 		MGI:1913972 (PMID:17323374)
GO_REF:0000107 		RGD
Ensembl		 PMID:17323374 GO_REF:0000107 NCBI chr11:97,677,840...97,773,580
Ensembl chr11:84,173,526...84,269,364 		JBrowse link
G Spef2 sperm flagellar 2 acts_upstream_of_or_within ISO MGI:1922208|MGI:2684947|MGI:5295267 (PMID:24360193), (PMID:32704025) RGD PMID:24360193 PMID:32704025 NCBI chr 2:58,512,489...58,694,718
Ensembl chr 2:58,512,489...58,694,664 		JBrowse link
G Stard7 StAR-related lipid transfer domain containing 7 acts_upstream_of_or_within ISO
IEA 		MGI:4433666 (PMID:25980009)
GO_REF:0000107 		RGD
Ensembl		 PMID:25980009 GO_REF:0000107 NCBI chr 3:114,487,161...114,515,828
Ensembl chr 3:114,485,600...114,515,813 		JBrowse link
G Ttll1 TTL family tubulin polyglutamylase complex subunit L1 acts_upstream_of_or_within ISO
IEA 		MGI:4461777 (PMID:29440671)
GO_REF:0000107 		RGD
Ensembl		 PMID:29440671 GO_REF:0000107 NCBI chr 7:116,499,536...116,528,833
Ensembl chr 7:114,619,508...114,648,761 		JBrowse link
G Vangl1 VANGL planar cell polarity protein 1 acts_upstream_of_or_within ISO
IEA 		(PMID:33929515)
GO_REF:0000107 		RGD
Ensembl		 PMID:33929515 GO_REF:0000107 NCBI chr 2:189,586,681...189,637,609
Ensembl chr 2:189,589,229...189,637,619 		JBrowse link
regulation of respiratory gaseous exchange by nervous system process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adora1 adenosine A1 receptor IMP downregulates hypoxia-induced hyperventilation RGD PMID:16352472 RGD:1625230 NCBI chr13:45,658,872...45,695,821
Ensembl chr13:45,658,872...45,695,801 		JBrowse link
G Atp1a2 ATPase Na+/K+ transporting subunit alpha 2 acts_upstream_of_or_within ISO
IEA 		MGI:2451291|MGI:3522421 (PMID:12458206), (PMID:15564586)
GO_REF:0000107 		RGD
Ensembl		 PMID:12458206 PMID:15564586 GO_REF:0000107 NCBI chr13:87,261,964...87,286,911
Ensembl chr13:84,729,601...84,754,544 		JBrowse link
G Cc2d1a coiled-coil and C2 domain containing 1A acts_upstream_of_or_within ISO
IEA 		MGI:2176173|MGI:6458916 (PMID:26720614)
GO_REF:0000107 		RGD
Ensembl		 PMID:26720614 GO_REF:0000107 NCBI chr19:24,011,897...24,026,937
Ensembl chr19:24,011,938...24,026,936 		JBrowse link
G Glra1 glycine receptor, alpha 1 acts_upstream_of_or_within ISO
IEA 		MGI:1856362 (PMID:16800867)
GO_REF:0000107 		RGD
Ensembl		 PMID:16800867 GO_REF:0000107 NCBI chr10:39,625,853...39,727,897
Ensembl chr10:39,629,459...39,727,162 		JBrowse link
G Gls glutaminase acts_upstream_of_or_within ISO
IEA 		MGI:3514104 (PMID:16641247)
GO_REF:0000107 		RGD
Ensembl		 PMID:16641247 GO_REF:0000107 NCBI chr 9:56,836,584...56,908,861
Ensembl chr 9:49,344,781...49,416,900 		JBrowse link
G Gsx2 GS homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:2150162 (PMID:9398437)
GO_REF:0000107 		RGD
Ensembl		 PMID:9398437 GO_REF:0000107 NCBI chr14:33,477,968...33,480,320
Ensembl chr14:33,124,381...33,126,105 		JBrowse link
G Mecp2 methyl CpG binding protein 2 acts_upstream_of_or_within ISO
IEA 		MGI:2137311|MGI:2137555 (PMID:16354910), (PMID:18321864)
GO_REF:0000107 		RGD
Ensembl		 PMID:16354910 PMID:18321864 GO_REF:0000107 NCBI chr  X:156,932,481...156,995,981
Ensembl chr  X:151,789,930...151,844,689 		JBrowse link
G Nlgn1 neuroligin 1 acts_upstream_of_or_within ISO MGI:2444609 (PMID:16982420) RGD PMID:16982420 NCBI chr 2:110,184,987...111,110,316
Ensembl chr 2:108,257,824...109,002,464 		JBrowse link
G Nlgn2 neuroligin 2 involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
MGI:2444609 (PMID:16982420) 		BHF-UCL
Ensembl
RGD		 PMID:16982420 GO_REF:0000024 GO_REF:0000107 NCBI chr10:55,042,175...55,056,578
Ensembl chr10:54,544,588...54,558,434 		JBrowse link
G Nlgn3 neuroligin 3 involved_in
acts_upstream_of_or_within 		ISS
ISO 		GO_REF:0000024
MGI:2179435|MGI:2681835 (PMID:16982420) 		BHF-UCL
RGD		 PMID:16982420 GO_REF:0000024 NCBI chr  X:70,469,251...70,497,380
Ensembl chr  X:66,429,458...66,451,876 		JBrowse link
G Pbx3 PBX homeobox 3 acts_upstream_of_or_within ISO
IEA 		MGI:3510441 (PMID:15527896)
GO_REF:0000107 		RGD
Ensembl		 PMID:15527896 GO_REF:0000107 NCBI chr 3:17,488,691...17,682,412
Ensembl chr 3:17,488,693...17,682,791 		JBrowse link
G Phox2b paired-like homeobox 2b involved_in ISO
IEA 		(PMID:19940179)
GO_REF:0000107 		RGD
Ensembl		 PMID:19940179 GO_REF:0000107 NCBI chr14:41,066,012...41,069,202
Ensembl chr14:41,066,264...41,068,978 		JBrowse link
G Tlx3 T-cell leukemia, homeobox 3 acts_upstream_of_or_within ISO
IEA 		MGI:2180105 (PMID:15527896)
GO_REF:0000107 		RGD
Ensembl		 PMID:15527896 GO_REF:0000107 NCBI chr10:17,789,706...17,792,207
Ensembl chr10:17,790,053...17,792,207 		JBrowse link
G Tshz3 teashirt zinc finger homeobox 3 involved_in ISS
ISO 		GO_REF:0000024
(PMID:20631175) 		UniProt
RGD		 PMID:20631175 GO_REF:0000024 NCBI chr 1:98,525,584...98,597,428
Ensembl chr 1:89,381,858...89,460,874 		JBrowse link
regulation of respiratory system process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fto FTO, alpha-ketoglutarate dependent dioxygenase involved_in ISO (PMID:19234441) RGD PMID:19234441 NCBI chr19:15,284,898...15,692,142
Ensembl chr19:15,349,696...15,692,083 		JBrowse link
G Mtg1 mitochondrial ribosome-associated GTPase 1 involved_in ISO
IEA 		(PMID:23396448)
GO_REF:0000107 		RGD
Ensembl		 PMID:23396448 GO_REF:0000107 NCBI chr 1:194,931,543...194,944,278
Ensembl chr 1:194,931,531...194,944,277 		JBrowse link
G Mtg2 mitochondrial ribosome-associated GTPase 2 involved_in ISO
IEA 		(PMID:23396448)
GO_REF:0000107 		RGD
Ensembl		 PMID:23396448 GO_REF:0000107 NCBI chr 3:167,165,542...167,181,358
Ensembl chr 3:167,165,982...167,181,358 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    multicellular organismal process 9031
      respiratory gaseous exchange by respiratory system 86
        respiratory system process 59
          diaphragm contraction 5
          mucociliary clearance 14
          regulation of respiratory system process + 17
paths to the root