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ONTOLOGY REPORT - ANNOTATIONS


Term:respiratory system process
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Accession:GO:0003016 term browser browse the term
Definition:A process carried out by the organs or tissues of the respiratory system. The respiratory system is an organ system responsible for respiratory gaseous exchange.
Synonyms:exact_synonym: respiratory gaseous exchange
 alt_id: GO:0010802


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respiratory system process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adh5 alcohol dehydrogenase 5 (class III), chi polypeptide ISO MGI:MGI:3033711 (MGI:MGI:3616157|PMID:15919956) RGD PMID:15919956 MGI:MGI:3616157 NCBI chr 2:243,728,500...243,740,907
Ensembl chr 2:243,700,784...243,740,899
JBrowse link
G Ap3b1 adaptor related protein complex 3 subunit beta 1 ISO MGI:MGI:1333879 (MGI:MGI:2675181|PMID:12777251) RGD PMID:12777251 MGI:MGI:2675181 NCBI chr 2:24,022,815...24,227,522
Ensembl chr 2:24,024,791...24,226,224
JBrowse link
G Ccbe1 collagen and calcium binding EGF domains 1 ISO MGI:MGI:5495674 (MGI:MGI:5582954|PMID:24733830) RGD PMID:24733830 MGI:MGI:5582954 NCBI chr18:61,758,754...62,013,194
Ensembl chr18:61,759,289...61,788,863
JBrowse link
G Ecel1 endothelin converting enzyme-like 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:1340780|PMID:10400672)
Ensembl
UniProt
RGD
PMID:10400672 GO_REF:0000024, GO_REF:0000107, MGI:MGI:1340780 NCBI chr 9:94,238,568...94,252,484
Ensembl chr 9:94,239,006...94,250,809
JBrowse link
G Flt4 Fms related receptor tyrosine kinase 4 ISO
IEA
MGI:MGI:1856694 (MGI:MGI:5582954|PMID:24733830)
GO_REF:0000107
RGD
Ensembl
PMID:24733830 GO_REF:0000107, MGI:MGI:5582954 NCBI chr10:35,078,782...35,120,296
Ensembl chr10:35,078,726...35,121,599
JBrowse link
G Hoxa5 homeo box A5 ISO MGI:MGI:2150397 (MGI:MGI:1195049|PMID:9441679) RGD PMID:9441679 MGI:MGI:1195049
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 ISO MGI:MGI:2177763 (MGI:MGI:2675181|PMID:12777251) RGD PMID:12777251 MGI:MGI:2675181 NCBI chr 1:261,989,178...262,015,282
Ensembl chr 1:261,989,178...262,015,153
JBrowse link
G Jag2 jagged canonical Notch ligand 2 ISO
IEA
MGI:MGI:2657215 (MGI:MGI:1202245|PMID:9531541)
GO_REF:0000107
RGD
Ensembl
PMID:9531541 GO_REF:0000107, MGI:MGI:1202245 NCBI chr 6:137,711,144...137,733,331
Ensembl chr 6:137,711,155...137,733,026
JBrowse link
G Kdm6a lysine demethylase 6A ISO MGI:MGI:5448825 (MGI:MGI:5448135|PMID:22949634) RGD PMID:22949634 MGI:MGI:5448135 NCBI chr  X:4,805,493...4,945,788
Ensembl chr  X:4,806,277...4,945,944
JBrowse link
G Ndn necdin, MAGE family member ISO MGI:MGI:2653045|MGI:MGI:2653048 (MGI:MGI:1345919|PMID:10508517) RGD PMID:10508517 MGI:MGI:1345919 NCBI chr 1:122,981,755...122,983,354
Ensembl chr 1:122,981,755...122,983,351
JBrowse link
G Ndufs4 NADH:ubiquinone oxidoreductase subunit S4 ISO MGI:MGI:3527173 (MGI:MGI:6150107|PMID:28327638) RGD PMID:28327638 MGI:MGI:6150107 NCBI chr 2:46,372,488...46,476,162
Ensembl chr 2:46,372,518...46,476,203
JBrowse link
G Rab3a RAB3A, member RAS oncogene family ISO MGI:MGI:3762127 (MGI:MGI:3762126|PMID:11359932) RGD PMID:11359932 MGI:MGI:3762126 NCBI chr16:20,435,098...20,439,206
Ensembl chr16:20,435,101...20,439,206
JBrowse link
G Selenon selenoprotein N ISO (MGI:MGI:5494499|PMID:23325319) RGD PMID:23325319 MGI:MGI:5494499 NCBI chr 5:152,748,497...152,765,489
Ensembl chr 5:152,750,284...152,762,165
JBrowse link
G Stk40 serine/threonine kinase 40 ISO
IEA
MGI:MGI:5496282 (MGI:MGI:5486391|PMID:23293024)
GO_REF:0000107
RGD
Ensembl
PMID:23293024 GO_REF:0000107, MGI:MGI:5486391 NCBI chr 5:144,112,612...144,150,653
Ensembl chr 5:144,114,012...144,150,647
JBrowse link
G Tcf15 transcription factor 15 ISO MGI:MGI:1929775 (MGI:MGI:84545|PMID:8955271) RGD PMID:8955271 MGI:MGI:84545 NCBI chr 3:147,643,250...147,649,511
Ensembl chr 3:147,643,250...147,649,504
JBrowse link
G Ywhaz tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta ISO (MGI:MGI:6109167|PMID:29118970) RGD PMID:29118970 MGI:MGI:6109167 NCBI chr 7:75,573,553...75,598,295
Ensembl chr 7:75,574,967...75,597,276
JBrowse link
G Zfand5 zinc finger AN1-type containing 5 ISO MGI:MGI:3526860 (MGI:MGI:3696608|PMID:17143286) RGD PMID:17143286 MGI:MGI:3696608 NCBI chr 1:238,842,506...238,854,030
Ensembl chr 1:238,843,338...238,852,566
JBrowse link
diaphragm contraction term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adrb2 adrenoceptor beta 2 IDA RGD PMID:17362795 RGD:4145100 NCBI chr18:57,513,792...57,515,834
Ensembl chr18:57,513,793...57,515,834
JBrowse link
G Gaa glucosidase, alpha, acid ISO
IEA
(PMID:16917947)
GO_REF:0000107
MGI:MGI:2148550 (MGI:MGI:3618942|PMID:15169761)
RGD
Ensembl
PMID:15169761, PMID:16917947 GO_REF:0000107, MGI:MGI:3618942 NCBI chr10:108,395,873...108,412,999
Ensembl chr10:108,395,860...108,413,059
JBrowse link
G Tnnc1 troponin C1, slow skeletal and cardiac type IDA RGD PMID:14985239 RGD:1598612 NCBI chr16:7,292,207...7,295,238
Ensembl chr16:7,292,096...7,295,465
JBrowse link
mucociliary clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cfap43 cilia and flagella associated protein 43 ISO
IEA
MGI:MGI:6431400 (MGI:MGI:6402702|PMID:31884020)
GO_REF:0000107
RGD
Ensembl
PMID:31884020 GO_REF:0000107, MGI:MGI:6402702 NCBI chr 1:267,511,359...267,598,642
Ensembl chr 1:267,511,523...267,598,639
JBrowse link
G Nek10 NIMA-related kinase 10 ISO (PMID:31959991) RGD PMID:31959991 NCBI chr15:11,627,133...11,830,647
Ensembl chr15:11,632,759...11,812,485
JBrowse link
G Spag16 sperm associated antigen 16 ISO MGI:MGI:2662475 (MGI:MGI:6274126|PMID:17323374) RGD PMID:17323374 MGI:MGI:6274126 NCBI chr 9:77,027,626...77,833,476
Ensembl chr 9:77,320,726...77,833,281
JBrowse link
G Spag6l sperm associated antigen 6-like ISO MGI:MGI:3606977 (MGI:MGI:6274126|PMID:17323374) RGD PMID:17323374 MGI:MGI:6274126 NCBI chr11:88,424,493...88,517,910
Ensembl chr11:88,424,414...88,508,601
JBrowse link
G Stard7 StAR-related lipid transfer domain containing 7 ISO MGI:MGI:4433666 (MGI:MGI:5906122|PMID:25980009) RGD PMID:25980009 MGI:MGI:5906122 NCBI chr 3:119,698,655...119,727,303
Ensembl chr 3:119,698,652...119,727,347
JBrowse link
G Ttc25 tetratricopeptide repeat domain 25 ISO
IEA
(PMID:27486780)
GO_REF:0000107
RGD
Ensembl
PMID:27486780 GO_REF:0000107 NCBI chr10:88,459,490...88,488,237
Ensembl chr10:88,459,490...88,488,237
JBrowse link
G Ttll1 tubulin tyrosine ligase like 1 ISO MGI:MGI:4461777 (MGI:MGI:6162909|PMID:29440671) RGD PMID:29440671 MGI:MGI:6162909 NCBI chr 7:124,338,396...124,367,719
Ensembl chr 7:124,338,395...124,367,630
JBrowse link
regulation of respiratory gaseous exchange by nervous system process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adora1 adenosine A1 receptor IMP downregulates hypoxia-induced hyperventilation RGD PMID:16352472 RGD:1625230 NCBI chr13:51,042,111...51,076,913
Ensembl chr13:51,042,248...51,076,852
JBrowse link
G Atp1a2 ATPase Na+/K+ transporting subunit alpha 2 ISO MGI:MGI:2451291|MGI:MGI:3522421 (MGI:MGI:2450206|PMID:12458206), (MGI:MGI:3521550|PMID:15564586) RGD PMID:12458206, PMID:15564586 MGI:MGI:2450206, MGI:MGI:3521550 NCBI chr13:90,651,682...90,676,629
Ensembl chr13:90,651,686...90,676,629
JBrowse link
G Glra1 glycine receptor, alpha 1 ISO MGI:MGI:1856362 (MGI:MGI:3654385|PMID:16800867) RGD PMID:16800867 MGI:MGI:3654385 NCBI chr10:40,851,955...40,954,364
Ensembl chr10:40,855,559...40,953,651
JBrowse link
G Gls glutaminase ISO
IEA
MGI:MGI:3514104 (MGI:MGI:3623875|PMID:16641247)
GO_REF:0000107
RGD
Ensembl
PMID:16641247 GO_REF:0000107, MGI:MGI:3623875 NCBI chr 9:54,212,622...54,284,879
Ensembl chr 9:54,212,767...54,284,872
JBrowse link
G Gsx2 GS homeobox 2 ISO MGI:MGI:2150162 (MGI:MGI:1099899|PMID:9398437) RGD PMID:9398437 MGI:MGI:1099899 NCBI chr14:35,650,985...35,652,709
Ensembl chr14:35,650,985...35,652,709
JBrowse link
G Mecp2 methyl CpG binding protein 2 IEA
ISO
GO_REF:0000107
MGI:MGI:2137311|MGI:MGI:2137555 (MGI:MGI:3611090|PMID:16354910), (MGI:MGI:3794508|PMID:18321864)
Ensembl
RGD
PMID:16354910, PMID:18321864 GO_REF:0000107, MGI:MGI:3611090, MGI:MGI:3794508 NCBI chr  X:156,650,389...156,713,813
Ensembl chr  X:156,655,960...156,705,233
JBrowse link
G Nlgn1 neuroligin 1 ISO MGI:MGI:2444609 (MGI:MGI:3687386|PMID:16982420) RGD PMID:16982420 MGI:MGI:3687386 NCBI chr 2:111,057,291...111,973,681
Ensembl chr 2:111,057,291...111,793,326
JBrowse link
G Nlgn2 neuroligin 2 ISO
ISS
IEA
MGI:MGI:2444609 (MGI:MGI:3687386|PMID:16982420)
GO_REF:0000024
GO_REF:0000107
RGD
BHF-UCL
Ensembl
PMID:16982420 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3687386 NCBI chr10:56,431,586...56,444,847
Ensembl chr10:56,431,573...56,444,847
JBrowse link
G Nlgn3 neuroligin 3 ISO
ISS
IEA
MGI:MGI:2179435|MGI:MGI:2681835 (MGI:MGI:3687386|PMID:16982420)
GO_REF:0000024
GO_REF:0000107
RGD
BHF-UCL
Ensembl
PMID:16982420 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3687386 NCBI chr  X:71,199,390...71,227,460
Ensembl chr  X:71,199,491...71,222,732
JBrowse link
G Pbx3 PBX homeobox 3 ISO MGI:MGI:3510441 (MGI:MGI:3626029|PMID:15527896) RGD PMID:15527896 MGI:MGI:3626029 NCBI chr 3:13,241,031...13,436,084
Ensembl chr 3:13,182,024...13,525,983
JBrowse link
G Phox2b paired-like homeobox 2b ISO (MGI:MGI:4418003|PMID:19940179) RGD PMID:19940179 MGI:MGI:4418003 NCBI chr14:42,711,169...42,718,707
Ensembl chr14:42,714,315...42,717,010
JBrowse link
G Tlx3 T-cell leukemia, homeobox 3 ISO MGI:MGI:2180105 (MGI:MGI:3626029|PMID:15527896) RGD PMID:15527896 MGI:MGI:3626029 NCBI chr10:18,128,869...18,131,745
Ensembl chr10:18,129,408...18,131,562
JBrowse link
G Tshz3 teashirt zinc finger homeobox 3 ISO
ISS
(MGI:MGI:4819308|PMID:20631175)
GO_REF:0000024
RGD
UniProt
PMID:20631175 GO_REF:0000024, MGI:MGI:4819308 NCBI chr 1:92,703,180...92,775,020
Ensembl chr 1:92,703,080...92,774,975
JBrowse link
regulation of respiratory system process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fto FTO, alpha-ketoglutarate dependent dioxygenase IEA
ISO
GO_REF:0000107
(MGI:MGI:3840763|PMID:19234441)
Ensembl
RGD
PMID:19234441 GO_REF:0000107, MGI:MGI:3840763 NCBI chr19:16,774,549...17,115,098
Ensembl chr19:16,772,744...17,115,113
JBrowse link
G Mtg1 mitochondrial ribosome-associated GTPase 1 ISO (PMID:23396448) RGD PMID:23396448 NCBI chr 1:212,606,753...212,619,493
Ensembl chr 1:212,606,777...212,619,493
JBrowse link
G Mtg2 mitochondrial ribosome-associated GTPase 2 ISO (PMID:23396448) RGD PMID:23396448 NCBI chr 3:175,448,214...175,464,109
Ensembl chr 3:175,450,979...175,464,117
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    multicellular organismal process 9055
      respiratory gaseous exchange by respiratory system 67
        respiratory system process 43
          diaphragm contraction 3
          mucociliary clearance 7
          regulation of respiratory system process + 16
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.