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ONTOLOGY REPORT - ANNOTATIONS


Term:respiratory gaseous exchange by respiratory system
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Accession:GO:0007585 term browser browse the term
Definition:The process of gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms.
Synonyms:broad_synonym: breathing;   respiration


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respiratory gaseous exchange by respiratory system term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccbe1 collagen and calcium binding EGF domains 1 ISO MGI:5495674 (MGI:5582954|PMID:24733830) RGD PMID:24733830 MGI:5582954 NCBI chr18:61,758,754...62,013,194
Ensembl chr18:61,759,289...61,788,863
JBrowse link
G Chrna4 cholinergic receptor nicotinic alpha 4 subunit IEA
ISO
GO_REF:0000107
(MGI:5013879|PMID:21606356)
Ensembl
RGD
PMID:21606356 GO_REF:0000107, MGI:5013879 NCBI chr 3:176,533,182...176,547,965
Ensembl chr 3:176,527,516...176,548,208
JBrowse link
G Chst11 carbohydrate sulfotransferase 11 ISO MGI:3768254 (MGI:3767479|PMID:16079159) RGD PMID:16079159 MGI:3767479 NCBI chr 7:26,641,856...26,890,503
Ensembl chr 7:26,645,422...26,859,716
JBrowse link
G Dach1 dachshund family transcription factor 1 ISO MGI:2182311 (MGI:1930429|PMID:11238885) RGD PMID:11238885 MGI:1930429 NCBI chr15:82,095,003...82,482,272
Ensembl chr15:82,099,159...82,482,009
JBrowse link
G Edn1 endothelin 1 ISO MGI:1857637 (MGI:1352592|PMID:10626068) RGD PMID:10626068 MGI:1352592 NCBI chr17:22,136,814...22,143,745
Ensembl chr17:22,137,324...22,143,324
JBrowse link
G Ednra endothelin receptor type A IEA
ISO
GO_REF:0000107
MGI:1857473 (MGI:1201717|PMID:9449664), (MGI:1352592|PMID:10626068)
Ensembl
RGD
PMID:9449664, PMID:10626068 GO_REF:0000107, MGI:1201717, MGI:1352592 NCBI chr19:33,928,356...33,991,703
Ensembl chr19:33,928,356...33,991,703
JBrowse link
G Flt4 Fms related receptor tyrosine kinase 4 ISO MGI:1856694 (MGI:5582954|PMID:24733830) RGD PMID:24733830 MGI:5582954 NCBI chr10:35,078,782...35,120,296
Ensembl chr10:35,078,726...35,121,599
JBrowse link
G Fut8 fucosyltransferase 8 IEA
ISO
GO_REF:0000107
MGI:3608699 (MGI:3608245|PMID:16236725)
Ensembl
RGD
PMID:16236725 GO_REF:0000107, MGI:3608245 NCBI chr 6:100,305,957...100,537,208
Ensembl chr 6:100,337,226...100,537,224
JBrowse link
G Hoxa5 homeo box A5 ISO MGI:2150397 (MGI:3606710|PMID:15295088) RGD PMID:15295088 MGI:3606710
G Mafb MAF bZIP transcription factor B ISO MGI:2677917 (MGI:2676513|PMID:14513037) RGD PMID:14513037 MGI:2676513 NCBI chr 3:156,338,993...156,340,913
Ensembl chr 3:156,339,004...156,340,913
JBrowse link
G Man1a2 mannosidase, alpha, class 1A, member 2 ISO MGI:3703789 (MGI:3703634|PMID:17121831) RGD PMID:17121831 MGI:3703634 NCBI chr 2:202,891,537...203,043,847
Ensembl chr 2:202,891,537...203,043,847
JBrowse link
G Man2a1 mannosidase, alpha, class 2A, member 1 ISO MGI:2150656 (MGI:3652665|PMID:16754854) RGD PMID:16754854 MGI:3652665 NCBI chr 9:112,293,388...112,451,677
Ensembl chr 9:112,293,388...112,451,677
JBrowse link
G Mapk8ip3 mitogen-activated protein kinase 8 interacting protein 3 ISO MGI:3053053 (MGI:2673021|PMID:12897243) RGD PMID:12897243 MGI:2673021 NCBI chr10:14,259,394...14,299,276
Ensembl chr10:14,260,787...14,299,167
JBrowse link
G Mecp2 methyl CpG binding protein 2 ISO MGI:2137311 (MGI:1931684|PMID:11242117) RGD PMID:11242117 MGI:1931684 NCBI chr  X:156,650,389...156,713,813
Ensembl chr  X:156,655,960...156,705,233
JBrowse link
G Ndn necdin, MAGE family member ISO MGI:2653048 (MGI:2651969|PMID:12629158) RGD PMID:12629158 MGI:2651969 NCBI chr 1:122,981,755...122,983,354
Ensembl chr 1:122,981,755...122,983,351
JBrowse link
G Ndst1 N-deacetylase and N-sulfotransferase 1 ISO MGI:1888706|MGI:1889939 (MGI:1353121|PMID:10664446), (MGI:1888581|PMID:10852901) RGD PMID:10664446, PMID:10852901 MGI:1353121, MGI:1888581 NCBI chr18:55,951,497...56,014,107
Ensembl chr18:55,955,389...55,992,885
JBrowse link
G Pbx3 PBX homeobox 3 ISO MGI:3510441 (MGI:3505657|PMID:15466398) RGD PMID:15466398 MGI:3505657 NCBI chr 3:13,241,031...13,436,084
Ensembl chr 3:13,182,024...13,525,983
JBrowse link
G Sftpa1 surfactant protein A1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:18,716,019...18,719,404
Ensembl chr16:18,716,019...18,719,403
JBrowse link
G Sftpb surfactant protein B IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:100,166,855...100,175,941
Ensembl chr 4:100,166,863...100,175,938
JBrowse link
G Sftpc surfactant protein C IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr15:52,211,538...52,214,480
Ensembl chr15:52,211,544...52,214,616
JBrowse link
G Sftpd surfactant protein D IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:18,753,535...18,766,100
Ensembl chr16:18,745,458...18,766,174
JBrowse link
G Tas2r108 taste receptor, type 2, member 108 ISO (MGI:5013879|PMID:21606356) RGD PMID:21606356 MGI:5013879 NCBI chr 4:68,656,928...68,657,842
Ensembl chr 4:68,656,928...68,657,842
JBrowse link
G Tlx3 T-cell leukemia, homeobox 3 ISO MGI:1857260 (MGI:1353862|PMID:10700185) RGD PMID:10700185 MGI:1353862 NCBI chr10:18,128,869...18,131,745
Ensembl chr10:18,129,408...18,131,562
JBrowse link
G Traf4 Tnf receptor associated factor 4 ISO MGI:2158361 (MGI:2157821|PMID:10934170) RGD PMID:10934170 MGI:2157821 NCBI chr10:65,418,688...65,424,802
Ensembl chr10:65,418,700...65,424,802
JBrowse link
diaphragm contraction term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adrb2 adrenoceptor beta 2 IDA RGD PMID:17362795 RGD:4145100 NCBI chr18:57,513,792...57,515,834
Ensembl chr18:57,513,793...57,515,834
JBrowse link
G Gaa glucosidase, alpha, acid ISO
IEA
(PMID:16917947)
MGI:2148550 (MGI:3618942|PMID:15169761)
GO_REF:0000107
RGD
Ensembl
PMID:15169761, PMID:16917947 GO_REF:0000107, MGI:3618942 NCBI chr10:108,395,873...108,412,999
Ensembl chr10:108,395,860...108,413,059
JBrowse link
G Tnnc1 troponin C1, slow skeletal and cardiac type IDA RGD PMID:14985239 RGD:1598612 NCBI chr16:7,292,207...7,295,238
Ensembl chr16:7,292,096...7,295,465
JBrowse link
mucociliary clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cfap43 cilia and flagella associated protein 43 ISO MGI:6431400 (MGI:6402702|PMID:31884020) RGD PMID:31884020 MGI:6402702 NCBI chr 1:267,511,359...267,598,642
Ensembl chr 1:267,511,523...267,598,639
JBrowse link
G Nek10 NIMA-related kinase 10 ISO (PMID:31959991) RGD PMID:31959991 NCBI chr15:11,627,133...11,830,647
Ensembl chr15:11,632,759...11,812,485
JBrowse link
G Odad4 outer dynein arm docking complex subunit 4 ISO (PMID:27486780) RGD PMID:27486780 NCBI chr10:88,459,490...88,488,237
Ensembl chr10:88,459,490...88,488,237
JBrowse link
G Spag16 sperm associated antigen 16 ISO MGI:2662475 (MGI:6274126|PMID:17323374) RGD PMID:17323374 MGI:6274126 NCBI chr 9:77,027,626...77,833,476
Ensembl chr 9:77,320,726...77,833,281
JBrowse link
G Spag6l sperm associated antigen 6-like ISO MGI:3606977 (MGI:6274126|PMID:17323374) RGD PMID:17323374 MGI:6274126 NCBI chr11:88,424,493...88,517,910
Ensembl chr11:88,424,414...88,508,601
JBrowse link
G Stard7 StAR-related lipid transfer domain containing 7 ISO MGI:4433666 (MGI:5906122|PMID:25980009) RGD PMID:25980009 MGI:5906122 NCBI chr 3:119,698,655...119,727,303
Ensembl chr 3:119,698,652...119,727,347
JBrowse link
G Ttll1 tubulin tyrosine ligase like 1 ISO MGI:4461777 (MGI:6162909|PMID:29440671) RGD PMID:29440671 MGI:6162909 NCBI chr 7:124,338,396...124,367,719
Ensembl chr 7:124,338,395...124,367,630
JBrowse link
regulation of respiratory gaseous exchange term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apln apelin IMP RGD PMID:12798955 RGD:1626237 NCBI chr  X:134,856,719...134,866,210
Ensembl chr  X:134,856,726...134,866,210
JBrowse link
G Glra1 glycine receptor, alpha 1 ISO MGI:1856177 (MGI:3607968|PMID:12380014), (MGI:3622577|PMID:11742725) RGD PMID:11742725, PMID:12380014 MGI:3607968, MGI:3622577 NCBI chr10:40,851,955...40,954,364
Ensembl chr10:40,855,559...40,953,651
JBrowse link
G Grin1 glutamate ionotropic receptor NMDA type subunit 1 IEA
ISO
GO_REF:0000107
MGI:1928270 (MGI:2137201|PMID:10777815), (MGI:65431|PMID:8313466), (MGI:85962|PMID:8713451)
Ensembl
RGD
PMID:8313466, PMID:8713451, PMID:10777815 GO_REF:0000107, MGI:2137201, MGI:65431, MGI:85962 NCBI chr 3:2,507,745...2,534,664
Ensembl chr 3:2,506,896...2,534,663
JBrowse link
G Nr4a2 nuclear receptor subfamily 4, group A, member 2 IEA
ISO
GO_REF:0000107
MGI:2157566 (MGI:3614580|PMID:14742729)
Ensembl
RGD
PMID:14742729 GO_REF:0000107, MGI:3614580 NCBI chr 3:43,111,258...43,128,391
Ensembl chr 3:43,111,240...43,119,159
JBrowse link
G Ntsr1 neurotensin receptor 1 IMP RGD PMID:22211865 RGD:9727449 NCBI chr 3:175,982,313...176,046,345
Ensembl chr 3:175,885,894...176,046,345
JBrowse link
G Pask PAS domain containing serine/threonine kinase ISO (MGI:3807467|PMID:18509100) RGD PMID:18509100 MGI:3807467 NCBI chr 9:100,450,595...100,479,719
Ensembl chr 9:100,450,586...100,479,868
JBrowse link
G Phox2a paired-like homeobox 2a IEA
ISO
GO_REF:0000107
MGI:2180328 (MGI:3710902|PMID:17218061)
Ensembl
RGD
PMID:17218061 GO_REF:0000107, MGI:3710902 NCBI chr 1:166,893,734...166,898,252
Ensembl chr 1:166,893,734...166,898,252
JBrowse link
G Slc5a3 solute carrier family 5 member 3 ISO MGI:2663787 (MGI:2662670|PMID:12582158) RGD PMID:12582158 MGI:2662670 NCBI chr11:32,229,366...32,231,812 JBrowse link
regulation of respiratory gaseous exchange by nervous system process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adora1 adenosine A1 receptor IMP downregulates hypoxia-induced hyperventilation RGD PMID:16352472 RGD:1625230 NCBI chr13:51,042,111...51,076,913
Ensembl chr13:51,042,248...51,076,852
JBrowse link
G Atp1a2 ATPase Na+/K+ transporting subunit alpha 2 ISO MGI:2451291|MGI:3522421 (MGI:2450206|PMID:12458206), (MGI:3521550|PMID:15564586) RGD PMID:12458206, PMID:15564586 MGI:2450206, MGI:3521550 NCBI chr13:90,651,682...90,676,629
Ensembl chr13:90,651,686...90,676,629
JBrowse link
G Glra1 glycine receptor, alpha 1 ISO MGI:1856362 (MGI:3654385|PMID:16800867) RGD PMID:16800867 MGI:3654385 NCBI chr10:40,851,955...40,954,364
Ensembl chr10:40,855,559...40,953,651
JBrowse link
G Gls glutaminase IEA
ISO
GO_REF:0000107
MGI:3514104 (MGI:3623875|PMID:16641247)
Ensembl
RGD
PMID:16641247 GO_REF:0000107, MGI:3623875 NCBI chr 9:54,212,622...54,284,879
Ensembl chr 9:54,212,767...54,284,872
JBrowse link
G Gsx2 GS homeobox 2 ISO MGI:2150162 (MGI:1099899|PMID:9398437) RGD PMID:9398437 MGI:1099899 NCBI chr14:35,650,985...35,652,709
Ensembl chr14:35,650,985...35,652,709
JBrowse link
G Mecp2 methyl CpG binding protein 2 ISO MGI:2137311|MGI:2137555 (MGI:3611090|PMID:16354910), (MGI:3794508|PMID:18321864) RGD PMID:16354910, PMID:18321864 MGI:3611090, MGI:3794508 NCBI chr  X:156,650,389...156,713,813
Ensembl chr  X:156,655,960...156,705,233
JBrowse link
G Nlgn1 neuroligin 1 ISO MGI:2444609 (MGI:3687386|PMID:16982420) RGD PMID:16982420 MGI:3687386 NCBI chr 2:111,057,291...111,973,681
Ensembl chr 2:111,057,291...111,793,326
JBrowse link
G Nlgn2 neuroligin 2 IEA
ISO
ISS
GO_REF:0000107
MGI:2444609 (MGI:3687386|PMID:16982420)
GO_REF:0000024
Ensembl
RGD
BHF-UCL
PMID:16982420 GO_REF:0000024, GO_REF:0000107, MGI:3687386 NCBI chr10:56,431,586...56,444,847
Ensembl chr10:56,431,573...56,444,847
JBrowse link
G Nlgn3 neuroligin 3 IEA
ISO
ISS
GO_REF:0000107
MGI:2179435|MGI:2681835 (MGI:3687386|PMID:16982420)
GO_REF:0000024
Ensembl
RGD
BHF-UCL
PMID:16982420 GO_REF:0000024, GO_REF:0000107, MGI:3687386 NCBI chr  X:71,199,390...71,227,460
Ensembl chr  X:71,199,491...71,222,732
JBrowse link
G Pbx3 PBX homeobox 3 ISO MGI:3510441 (MGI:3626029|PMID:15527896) RGD PMID:15527896 MGI:3626029 NCBI chr 3:13,241,031...13,436,084
Ensembl chr 3:13,182,024...13,525,983
JBrowse link
G Phox2b paired-like homeobox 2b ISO (MGI:4418003|PMID:19940179) RGD PMID:19940179 MGI:4418003 NCBI chr14:42,711,169...42,718,707
Ensembl chr14:42,714,315...42,717,010
JBrowse link
G Tlx3 T-cell leukemia, homeobox 3 ISO MGI:2180105 (MGI:3626029|PMID:15527896) RGD PMID:15527896 MGI:3626029 NCBI chr10:18,128,869...18,131,745
Ensembl chr10:18,129,408...18,131,562
JBrowse link
G Tshz3 teashirt zinc finger homeobox 3 ISS
ISO
GO_REF:0000024
(MGI:4819308|PMID:20631175)
UniProt
RGD
PMID:20631175 GO_REF:0000024, MGI:4819308 NCBI chr 1:92,703,180...92,775,020
Ensembl chr 1:92,703,080...92,774,975
JBrowse link
regulation of respiratory system process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fto FTO, alpha-ketoglutarate dependent dioxygenase IEA
ISO
GO_REF:0000107
(MGI:3840763|PMID:19234441)
Ensembl
RGD
PMID:19234441 GO_REF:0000107, MGI:3840763 NCBI chr19:16,774,549...17,115,098
Ensembl chr19:16,772,744...17,115,113
JBrowse link
G Mtg1 mitochondrial ribosome-associated GTPase 1 ISO (PMID:23396448) RGD PMID:23396448 NCBI chr 1:212,606,753...212,619,493
Ensembl chr 1:212,606,777...212,619,493
JBrowse link
G Mtg2 mitochondrial ribosome-associated GTPase 2 ISO (PMID:23396448) RGD PMID:23396448 NCBI chr 3:175,448,214...175,464,109
Ensembl chr 3:175,450,979...175,464,117
JBrowse link
respiratory system process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adh5 alcohol dehydrogenase 5 (class III), chi polypeptide ISO MGI:3033711 (MGI:3616157|PMID:15919956) RGD PMID:15919956 MGI:3616157 NCBI chr 2:243,728,500...243,740,907
Ensembl chr 2:243,700,784...243,740,899
JBrowse link
G Ap3b1 adaptor related protein complex 3 subunit beta 1 ISO MGI:1333879 (MGI:2675181|PMID:12777251) RGD PMID:12777251 MGI:2675181 NCBI chr 2:24,022,815...24,227,522
Ensembl chr 2:24,024,791...24,226,224
JBrowse link
G Ccbe1 collagen and calcium binding EGF domains 1 ISO MGI:5495674 (MGI:5582954|PMID:24733830) RGD PMID:24733830 MGI:5582954 NCBI chr18:61,758,754...62,013,194
Ensembl chr18:61,759,289...61,788,863
JBrowse link
G Ecel1 endothelin converting enzyme-like 1 IEA
ISO
ISS
GO_REF:0000107
(MGI:1340780|PMID:10400672)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:10400672 GO_REF:0000024, GO_REF:0000107, MGI:1340780 NCBI chr 9:94,238,568...94,252,484
Ensembl chr 9:94,239,006...94,250,809
JBrowse link
G Flt4 Fms related receptor tyrosine kinase 4 IEA
ISO
GO_REF:0000107
MGI:1856694 (MGI:5582954|PMID:24733830)
Ensembl
RGD
PMID:24733830 GO_REF:0000107, MGI:5582954 NCBI chr10:35,078,782...35,120,296
Ensembl chr10:35,078,726...35,121,599
JBrowse link
G Hoxa5 homeo box A5 ISO MGI:2150397 (MGI:1195049|PMID:9441679) RGD PMID:9441679 MGI:1195049
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 ISO MGI:2177763 (MGI:2675181|PMID:12777251) RGD PMID:12777251 MGI:2675181 NCBI chr 1:261,989,178...262,015,282
Ensembl chr 1:261,989,178...262,015,153
JBrowse link
G Jag2 jagged canonical Notch ligand 2 IEA
ISO
GO_REF:0000107
MGI:2657215 (MGI:1202245|PMID:9531541)
Ensembl
RGD
PMID:9531541 GO_REF:0000107, MGI:1202245 NCBI chr 6:137,711,144...137,733,331
Ensembl chr 6:137,711,155...137,733,026
JBrowse link
G Kdm6a lysine demethylase 6A ISO MGI:5448825 (MGI:5448135|PMID:22949634) RGD PMID:22949634 MGI:5448135 NCBI chr  X:4,805,493...4,945,788
Ensembl chr  X:4,806,277...4,945,944
JBrowse link
G Ndn necdin, MAGE family member ISO MGI:2653045|MGI:2653048 (MGI:1345919|PMID:10508517) RGD PMID:10508517 MGI:1345919 NCBI chr 1:122,981,755...122,983,354
Ensembl chr 1:122,981,755...122,983,351
JBrowse link
G Ndufs4 NADH:ubiquinone oxidoreductase subunit S4 ISO MGI:3527173 (MGI:6150107|PMID:28327638) RGD PMID:28327638 MGI:6150107 NCBI chr 2:46,372,488...46,476,162
Ensembl chr 2:46,372,518...46,476,203
JBrowse link
G Rab3a RAB3A, member RAS oncogene family ISO MGI:3762127 (MGI:3762126|PMID:11359932) RGD PMID:11359932 MGI:3762126 NCBI chr16:20,435,098...20,439,206
Ensembl chr16:20,435,101...20,439,206
JBrowse link
G Selenon selenoprotein N ISO (MGI:5494499|PMID:23325319) RGD PMID:23325319 MGI:5494499 NCBI chr 5:152,748,497...152,765,489
Ensembl chr 5:152,750,284...152,762,165
JBrowse link
G Stk40 serine/threonine kinase 40 IEA
ISO
GO_REF:0000107
MGI:5496282 (MGI:5486391|PMID:23293024)
Ensembl
RGD
PMID:23293024 GO_REF:0000107, MGI:5486391 NCBI chr 5:144,112,612...144,150,653
Ensembl chr 5:144,114,012...144,150,647
JBrowse link
G Tcf15 transcription factor 15 ISO MGI:1929775 (MGI:84545|PMID:8955271) RGD PMID:8955271 MGI:84545 NCBI chr 3:147,643,250...147,649,511
Ensembl chr 3:147,643,250...147,649,504
JBrowse link
G Ywhaz tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta ISO (MGI:6109167|PMID:29118970) RGD PMID:29118970 MGI:6109167 NCBI chr 7:75,573,553...75,598,295
Ensembl chr 7:75,574,967...75,597,276
JBrowse link
G Zfand5 zinc finger AN1-type containing 5 ISO MGI:3526860 (MGI:3696608|PMID:17143286) RGD PMID:17143286 MGI:3696608 NCBI chr 1:238,842,506...238,854,030
Ensembl chr 1:238,843,338...238,852,566
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20030
    multicellular organismal process 9045
      respiratory gaseous exchange by respiratory system 67
        negative regulation of respiratory gaseous exchange 0
        positive regulation of respiratory gaseous exchange 0
        regulation of respiratory gaseous exchange + 23
        respiratory system process + 43
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.