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ONTOLOGY REPORT - ANNOTATIONS

Term:blastocyst development
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Accession:GO:0001824 term browser browse the term
Definition:The process whose specific outcome is the progression of the blastocyst over time, from its formation to the mature structure. The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm.
Comment:See also the Anatomical Dictionary for Mouse Development ontology terms 'TS5, embryo ; EMAP:23', 'TS5, inner cell mass ; EMAP:24' and 'TS5, trophectoderm; EMAP:28'.
Synonyms:only_in_taxon: NCBITaxon:32525 ! Theria


show annotations for term's descendants           Sort by:
blastocyst development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP1B1 ATPase Na+/K+ transporting subunit beta 1 acts_upstream_of_or_within ISO MGI MGI:1888635 NCBI chr 4:81,912,543...81,937,015
Ensembl chr 4:81,911,561...81,991,840 		JBrowse link
G BNIP2 BCL2 interacting protein 2 acts_upstream_of_or_within ISO (PMID:19117032) MGI PMID:19117032 NCBI chr 1:112,272,883...112,370,404
Ensembl chr 1:112,344,228...112,370,404 		JBrowse link
G CAPN2 calpain 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16433929) Ensembl
MGI		 PMID:16433929 GO_REF:0000107 NCBI chr10:19,758,824...19,820,241
Ensembl chr10:19,758,757...19,820,246 		JBrowse link
G CDK11 cyclin dependent kinase 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15060143) Ensembl
MGI		 PMID:15060143 GO_REF:0000107 NCBI chr 6:63,804,914...63,819,960 JBrowse link
G CDX2 caudal type homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15788452) Ensembl
MGI		 PMID:15788452 GO_REF:0000107 NCBI chr11:5,339,727...5,346,081
Ensembl chr11:5,339,716...5,346,057 		JBrowse link
G DAD1 defender against cell death 1 acts_upstream_of_or_within ISO (PMID:10748466) MGI PMID:10748466 NCBI chr 7:76,432,040...76,457,403
Ensembl chr 7:76,432,051...76,457,192 		JBrowse link
G DMBT1 deleted in malignant brain tumors 1 acts_upstream_of_or_within ISO (PMID:15452149) MGI PMID:15452149 NCBI chr14:132,154,346...132,231,274 JBrowse link
G ELF3 E74 like ETS transcription factor 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16630543) Ensembl
MGI		 PMID:16630543 GO_REF:0000107 NCBI chr10:24,237,852...24,242,266
Ensembl chr10:24,237,875...24,243,058 		JBrowse link
G EMG1 EMG1 N1-specific pseudouridine methyltransferase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20858271) Ensembl
MGI		 PMID:20858271 GO_REF:0000107 NCBI chr 5:63,746,326...63,751,469
Ensembl chr 5:63,745,476...63,751,469 		JBrowse link
G EOMES eomesodermin acts_upstream_of_or_within ISO (PMID:15788452) MGI PMID:15788452 NCBI chr13:14,209,590...14,216,184
Ensembl chr13:14,209,736...14,215,797 		JBrowse link
G ETV2 ETS variant transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16630543) Ensembl
MGI		 PMID:16630543 GO_REF:0000107 NCBI chr 6:45,085,984...45,089,592
Ensembl chr 6:45,087,100...45,089,626 		JBrowse link
G G2E3 G2/M-phase specific E3 ubiquitin protein ligase acts_upstream_of_or_within ISO (PMID:18511420) MGI PMID:18511420 NCBI chr 7:68,854,410...68,917,070
Ensembl chr 7:68,852,777...68,916,992 		JBrowse link
G GDF9 growth differentiation factor 9 involved_in IMP (PMID:24313324) AgBase PMID:24313324 NCBI chr 2:135,181,494...135,184,451
Ensembl chr 2:135,181,089...135,187,026 		JBrowse link
G HAND1 heart and neural crest derivatives expressed 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:68,679,977...68,683,346
Ensembl chr16:68,677,963...68,683,342 		JBrowse link
G HNF1A HNF1 homeobox A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16880268) Ensembl
MGI		 PMID:16880268 GO_REF:0000107 NCBI chr14:40,868,819...40,888,322
Ensembl chr14:40,868,676...40,888,328 		JBrowse link
G HORMAD1 HORMA domain containing 1 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:98,447,298...98,469,650
Ensembl chr 4:98,449,891...98,469,650 		JBrowse link
G KPNA7 karyopherin subunit alpha 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20699224) Ensembl
MGI		 PMID:20699224 GO_REF:0000107 NCBI chr 3:6,167,382...6,201,282
Ensembl chr 3:6,167,385...6,200,982 		JBrowse link
G MED21 mediator complex subunit 21 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10500093) Ensembl
MGI		 PMID:10500093 GO_REF:0000107 NCBI chr 5:46,704,358...46,736,434
Ensembl chr 5:46,725,568...46,736,388 		JBrowse link
G N4BP2L2 NEDD4 binding protein 2 like 2 acts_upstream_of_or_within ISO (PMID:18360097) MGI PMID:18360097 NCBI chr11:8,891,053...8,997,810 JBrowse link
G NASP nuclear autoantigenic sperm protein involved_in ISO (MGI:3694318|PMID:16728391) UniProt PMID:16728391 MGI:3694318 NCBI chr 6:165,773,964...165,804,978
Ensembl chr 6:165,770,055...165,805,383 		JBrowse link
G NEK2 NIMA related kinase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19117032) Ensembl
MGI		 PMID:19117032 GO_REF:0000107 NCBI chr 9:131,547,044...131,560,527
Ensembl chr 9:131,547,069...131,561,095 		JBrowse link
G NLRP9 NLR family pyrin domain containing 9 acts_upstream_of_or_within ISO (PMID:32413845) MGI PMID:32413845 NCBI chr 6:59,941,318...59,974,129
Ensembl chr 6:59,949,004...59,974,270 		JBrowse link
G NPM2 nucleophosmin/nucleoplasmin 2 involved_in ISO (PMID:12714744) UniProt PMID:12714744 NCBI chr14:6,288,422...6,303,750
Ensembl chr14:6,289,337...6,303,748 		JBrowse link
G POU5F1 POU class 5 homeobox 1 involved_in ISO (MGI:4946964|PMID:21258368) BHF-UCL PMID:21258368 MGI:4946964 NCBI chr 7:23,564,654...23,570,691 JBrowse link
G PPP1CC protein phosphatase 1 catalytic subunit gamma involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12606345) Ensembl
MGI		 PMID:12606345 GO_REF:0000107 NCBI chr14:32,071,472...32,091,267
Ensembl chr14:32,070,545...32,091,499 		JBrowse link
G PSMC3 proteasome 26S subunit, ATPase 3 acts_upstream_of_or_within ISO (PMID:10945464) MGI PMID:10945464 NCBI chr 2:15,185,482...15,191,189
Ensembl chr 2:15,166,306...15,193,047 		JBrowse link
G PSMC4 proteasome 26S subunit, ATPase 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10945464) Ensembl
MGI		 PMID:10945464 GO_REF:0000107 NCBI chr 6:48,406,237...48,414,470
Ensembl chr 6:48,406,376...48,416,215 		JBrowse link
G RPL13 ribosomal protein L13 acts_upstream_of ISO (PMID:26902285) MGI PMID:26902285 NCBI chr 6:410,923...413,396 JBrowse link
G RRM2 ribonucleotide reductase regulatory subunit M2 acts_upstream_of ISO (PMID:26902285) MGI PMID:26902285 NCBI chr 3:126,357,198...126,367,145
Ensembl chr 3:126,347,819...126,365,644 		JBrowse link
G SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11263494)
(PMID:11313485)		 Ensembl
MGI		 PMID:11263494 PMID:11313485 GO_REF:0000107 NCBI chr14:49,874,981...49,906,043
Ensembl chr14:49,874,984...49,906,048 		JBrowse link
G SPECC1 sperm antigen with calponin homology and coiled-coil domains 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:34166821) Ensembl
MGI		 PMID:34166821 GO_REF:0000107 NCBI chr12:59,466,778...59,705,602
Ensembl chr12:59,466,791...59,654,192 		JBrowse link
G SPIC Spi-C transcription factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16630543) Ensembl
MGI		 PMID:16630543 GO_REF:0000107 NCBI chr 5:82,724,322...82,793,527
Ensembl chr 5:82,726,360...82,795,864 		JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9921650) Ensembl
MGI		 PMID:9921650 GO_REF:0000107 NCBI chr 1:240,842,735...240,918,267
Ensembl chr 1:240,860,156...240,918,528 		JBrowse link
G TGFBR3 transforming growth factor beta receptor 3 acts_upstream_of_or_within ISO (PMID:9921650) MGI PMID:9921650 NCBI chr 4:125,109,939...125,310,788
Ensembl chr 4:125,110,072...125,316,796 		JBrowse link
G THOC2 THO complex subunit 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24315442) Ensembl
MGI		 PMID:24315442 GO_REF:0000107 NCBI chr  X:101,170,969...101,284,623
Ensembl chr  X:101,171,362...101,284,551 		JBrowse link
G XAB2 XPA binding protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15725628) Ensembl
MGI		 PMID:15725628 GO_REF:0000107 NCBI chr 2:71,521,034...71,530,468
Ensembl chr 2:71,521,081...71,530,929 		JBrowse link
G YAP1 Yes1 associated transcriptional regulator involved_in
acts_upstream_of		 IEA
ISO		 (PMID:26902285) Ensembl
MGI		 PMID:26902285 GO_REF:0000107 NCBI chr 9:32,811,629...32,924,926
Ensembl chr 9:32,811,416...32,925,603 		JBrowse link
blastocyst formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTL6A actin like 6A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chr13:117,598,415...117,627,311
Ensembl chr13:117,598,496...117,628,488 		JBrowse link
G BYSL bystin like involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17242206) Ensembl
MGI		 PMID:17242206 GO_REF:0000107 NCBI chr 7:37,074,517...37,086,753
Ensembl chr 7:37,074,515...37,088,533 		JBrowse link
G CCNB1IP1 cyclin B1 interacting protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17784788) Ensembl
MGI		 PMID:17784788 GO_REF:0000107 NCBI chr 7:78,553,680...78,576,057
Ensembl chr 7:78,564,122...78,575,462 		JBrowse link
G FURIN furin, paired basic amino acid cleaving enzyme involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:53,455,634...53,472,791
Ensembl chr 7:53,460,017...53,472,787 		JBrowse link
G GABPA GA binding protein transcription factor subunit alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chr13:189,289,513...189,327,501
Ensembl chr13:189,289,996...189,327,497 		JBrowse link
G KDM4C lysine demethylase 4C acts_upstream_of_or_within ISO (PMID:19696013) MGI PMID:19696013 NCBI chr 1:215,071,335...215,507,778
Ensembl chr 1:215,071,419...215,507,800 		JBrowse link
G MATR3 matrin 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chr 2:141,179,515...141,230,259
Ensembl chr 2:141,179,566...141,231,015 		JBrowse link
G MFN2 mitofusin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16083859) Ensembl
MGI		 PMID:16083859 GO_REF:0000107 NCBI chr 6:72,026,512...72,056,439
Ensembl chr 6:72,028,499...72,056,438 		JBrowse link
G MFNG MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chr 5:10,319,821...10,334,500
Ensembl chr 5:10,319,816...10,344,832 		JBrowse link
G MXI1 MAX interactor 1, dimerization protein acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr14:120,643,691...120,722,632
Ensembl chr14:120,643,830...120,724,099 		JBrowse link
G NOP2 NOP2 nucleolar protein acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr 5:64,106,013...64,115,582
Ensembl chr 5:64,106,098...64,115,579 		JBrowse link
G PBRM1 polybromo 1 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr13:34,689,718...34,821,117
Ensembl chr13:34,689,726...34,820,952 		JBrowse link
G PNLDC1 PARN like ribonuclease domain containing exonuclease 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chr 1:7,560,084...7,580,062
Ensembl chr 1:7,559,745...7,579,197 		JBrowse link
G PTPN18 protein tyrosine phosphatase non-receptor type 18 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr15:31,945,901...31,966,571
Ensembl chr15:31,945,897...31,965,753 		JBrowse link
G RPL7L1 ribosomal protein L7 like 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23211737), (PMID:27869233) Ensembl
MGI		 PMID:23211737 PMID:27869233 GO_REF:0000107 NCBI chr 7:37,940,549...37,948,258
Ensembl chr 7:37,940,834...37,951,324 		JBrowse link
G RRP7A ribosomal RNA processing 7 homolog A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23211737), (PMID:27869233) Ensembl
MGI		 PMID:23211737 PMID:27869233 GO_REF:0000107 NCBI chr 5:6,208,495...6,217,381
Ensembl chr 5:6,208,548...6,217,374 		JBrowse link
G RTN4 reticulon 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chr 3:86,180,022...86,252,126
Ensembl chr 3:86,180,022...86,252,126 		JBrowse link
G SF3B1 splicing factor 3b subunit 1 acts_upstream_of_or_within ISO (PMID:23211737), (PMID:27869233) MGI PMID:23211737 PMID:27869233 NCBI chr15:101,274,968...101,338,018
Ensembl chr15:101,276,851...101,299,105 		JBrowse link
G SF3B6 splicing factor 3b subunit 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23211737), (PMID:27869233) Ensembl
MGI		 PMID:23211737 PMID:27869233 GO_REF:0000107 NCBI chr 3:114,605,863...114,618,123
Ensembl chr 3:114,605,971...114,620,563 		JBrowse link
G SKIL SKI like proto-oncogene involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10811619) Ensembl
MGI		 PMID:10811619 GO_REF:0000107 NCBI chr13:109,029,831...109,059,176
Ensembl chr13:109,029,952...109,059,173 		JBrowse link
G SUPT6H SPT6 homolog, histone chaperone and transcription elongation factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chr12:44,916,716...44,940,732
Ensembl chr12:44,917,633...44,940,273 		JBrowse link
G TEAD4 TEA domain transcription factor 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18804437) Ensembl
MGI		 PMID:18804437 GO_REF:0000107 NCBI chr 5:67,130,392...67,167,579
Ensembl chr 5:67,118,317...67,194,072 		JBrowse link
G TJP1 tight junction protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18423437) Ensembl
MGI		 PMID:18423437 GO_REF:0000107 NCBI chr 1:144,930,387...145,195,857
Ensembl chr 1:144,930,370...145,195,836 		JBrowse link
G TM4SF1 transmembrane 4 L six family member 1 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr13:89,591,105...89,600,060
Ensembl chr13:89,591,106...89,600,027 		JBrowse link
G TXNRD3 thioredoxin reductase 3 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr13:73,276,249...73,336,782
Ensembl chr13:73,275,911...73,340,372 		JBrowse link
G USPL1 ubiquitin specific peptidase like 1 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr11:7,321,187...7,361,280
Ensembl chr11:7,321,202...7,361,571 		JBrowse link
G WDR74 WD repeat domain 74 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21799883), (PMID:27869233) Ensembl
MGI		 PMID:21799883 PMID:27869233 GO_REF:0000107 NCBI chr 2:8,931,530...8,936,908
Ensembl chr 2:8,931,495...8,936,906 		JBrowse link
G ZP3 zona pellucida glycoprotein 3 involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:9,934,760...9,944,924
Ensembl chr 3:9,934,761...9,944,941 		JBrowse link
blastocyst growth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24036311) Ensembl
MGI		 PMID:24036311 GO_REF:0000107 NCBI chr 2:48,700,629...48,729,480
Ensembl chr 2:48,700,974...48,729,307 		JBrowse link
G INTS1 integrator complex subunit 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17544522) Ensembl
MGI		 PMID:17544522 GO_REF:0000107 NCBI chr 3:979,403...1,005,584
Ensembl chr 3:979,405...1,005,527 		JBrowse link
G NBN nibrin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:46,787,664...46,854,331
Ensembl chr 4:46,787,691...46,874,603 		JBrowse link
G POU5F1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (PMID:24036311) MGI PMID:24036311 NCBI chr 7:23,564,654...23,570,691 JBrowse link
G RAD51B RAD51 paralog B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10567591) Ensembl
MGI		 PMID:10567591 GO_REF:0000107 NCBI chr 7:91,592,413...92,301,383
Ensembl chr 7:91,592,424...92,345,294 		JBrowse link
G RLN2 relaxin 2 involved_in IDA (PMID:21272344) CACAO PMID:21272344 NCBI chr 1:216,763,546...216,769,802 JBrowse link
G RTF1 RTF1 homolog, Paf1/RNA polymerase II complex component involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24036311) Ensembl
MGI		 PMID:24036311 GO_REF:0000107 NCBI chr 1:129,886,798...129,942,845
Ensembl chr 1:129,886,800...129,943,181 		JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO (PMID:11163203) MGI PMID:11163203 NCBI chr 2:69,717,175...69,810,301
Ensembl chr 2:69,662,238...69,810,295 		JBrowse link
G UBTFL1 upstream binding transcription factor like 1 acts_upstream_of_or_within ISO (PMID:19915186) MGI PMID:19915186 NCBI chr 9:23,060,755...23,069,983 JBrowse link
G ZNF830 zinc finger protein 830 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr12:40,201,556...40,205,076 JBrowse link
blastocyst hatching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKAP3 A-kinase anchoring protein 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chr 5:65,788,744...65,816,031
Ensembl chr 5:65,797,376...65,819,765 		JBrowse link
G ANKRD7 ankyrin repeat domain 7 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr18:28,098,184...28,109,802 JBrowse link
G ARHGDIG Rho GDP dissociation inhibitor gamma involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chr 3:41,397,640...41,402,095
Ensembl chr 3:41,397,643...41,400,241 		JBrowse link
G ASF1B anti-silencing function 1B histone chaperone involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chr 2:65,063,186...65,072,681
Ensembl chr 2:65,062,766...65,072,679 		JBrowse link
G BCOR BCL6 corepressor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chr  X:35,768,013...35,891,013
Ensembl chr  X:35,768,017...35,814,833 		JBrowse link
G CCDC24 coiled-coil domain containing 24 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chr 6:167,301,560...167,305,471
Ensembl chr 6:167,301,565...167,305,255 		JBrowse link
G CCDC62 coiled-coil domain containing 62 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chr14:30,028,561...30,066,638
Ensembl chr14:30,028,566...30,066,257 		JBrowse link
G CMTM3 CKLF like MARVEL transmembrane domain containing 3 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr 6:27,308,146...27,320,449
Ensembl chr 6:27,308,141...27,317,308 		JBrowse link
G COPRS coordinator of PRMT5 and differentiation stimulator acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr12:43,091,181...43,097,998
Ensembl chr12:43,091,176...43,097,994 		JBrowse link
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chr 2:48,700,629...48,729,480
Ensembl chr 2:48,700,974...48,729,307 		JBrowse link
G GRN granulin precursor acts_upstream_of_or_within ISO (PMID:15901638) MGI PMID:15901638 NCBI chr12:18,893,772...18,900,444
Ensembl chr12:18,893,770...18,900,446 		JBrowse link
G HCFC1 host cell factor C1 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr  X:124,673,125...124,694,846
Ensembl chr  X:124,673,128...124,694,152 		JBrowse link
G HS3ST6 heparan sulfate-glucosamine 3-sulfotransferase 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chr 3:40,029,927...40,038,803
Ensembl chr 3:40,032,464...40,038,870 		JBrowse link
G LOC100512568 rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chr16:55,351,616...55,354,642
Ensembl chr16:55,351,727...55,352,725 		JBrowse link
G LOC102164547 zinc finger protein 420 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr 6:46,479,566...46,530,528 JBrowse link
G LPAR6 lysophosphatidic acid receptor 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chr11:19,216,305...19,220,913
Ensembl chr11:19,219,077...19,220,347 		JBrowse link
G NDUFA2 NADH:ubiquinone oxidoreductase subunit A2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chr 2:142,359,000...142,361,126
Ensembl chr 2:142,359,007...142,361,131 		JBrowse link
G NECAB1 N-terminal EF-hand calcium binding protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chr 4:45,981,777...46,239,673
Ensembl chr 4:45,982,106...46,239,654 		JBrowse link
G PEMT phosphatidylethanolamine N-methyltransferase acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr12:60,880,367...60,919,279 JBrowse link
G PHF6 PHD finger protein 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chr  X:110,249,010...110,311,503
Ensembl chr  X:110,249,010...110,303,017 		JBrowse link
G PLPP4 phospholipid phosphatase 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chr14:130,277,217...130,424,632
Ensembl chr14:130,276,639...130,424,627 		JBrowse link
G PPP4R4 protein phosphatase 4 regulatory subunit 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chr 7:115,412,457...115,523,232
Ensembl chr 7:115,412,449...115,522,686 		JBrowse link
G RBBP8 RB binding protein 8, endonuclease involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15831459) Ensembl
MGI		 PMID:15831459 GO_REF:0000107 NCBI chr 6:107,923,921...108,020,067
Ensembl chr 6:107,924,002...108,022,669 		JBrowse link
G SLC25A34 solute carrier family 25 member 34 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chr 6:74,909,637...74,914,430
Ensembl chr 6:74,909,705...74,914,426 		JBrowse link
G SLC35E2 solute carrier family 35 member E2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chr 6:63,820,804...63,842,400
Ensembl chr 6:63,820,812...63,835,561 		JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO (PMID:11163203) MGI PMID:11163203 NCBI chr 2:69,717,175...69,810,301
Ensembl chr 2:69,662,238...69,810,295 		JBrowse link
G SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11313485)
(PMID:11263494)		 Ensembl
MGI		 PMID:11263494 PMID:11313485 GO_REF:0000107 NCBI chr14:49,874,981...49,906,043
Ensembl chr14:49,874,984...49,906,048 		JBrowse link
G SMIM14 small integral membrane protein 14 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr 8:30,765,417...30,840,416
Ensembl chr 8:30,765,418...30,840,434 		JBrowse link
G ST8SIA6 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chr10:43,601,677...43,755,154
Ensembl chr10:43,602,908...43,755,277 		JBrowse link
G STMN3 stathmin 3 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr17:62,600,450...62,609,851
Ensembl chr17:62,600,455...62,609,018 		JBrowse link
G SUDS3 SDS3 homolog, SIN3A corepressor complex component acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr14:34,241,220...34,317,092
Ensembl chr14:34,156,339...34,317,081 		JBrowse link
G SUV39H1 SUV39H1 histone lysine methyltransferase acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr  X:42,797,309...42,811,457
Ensembl chr  X:42,797,828...42,811,461 		JBrowse link
G TBL1XR1 TBL1X/Y related 1 acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr13:115,312,444...115,488,228
Ensembl chr13:115,312,452...115,487,284 		JBrowse link
G UBE2A ubiquitin conjugating enzyme E2 A acts_upstream_of_or_within ISO (PMID:27869233) MGI PMID:27869233 NCBI chr  X:97,925,136...98,007,551
Ensembl chr  X:97,925,131...98,012,278 		JBrowse link
G ZBED6 zinc finger, BED-type containing 6 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 9:64,520,950...64,524,501 JBrowse link
G ZFP14 ZFP14 zinc finger protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27869233) Ensembl
MGI		 PMID:27869233 GO_REF:0000107 NCBI chr 6:45,987,660...46,015,668
Ensembl chr 6:45,987,752...46,014,350 		JBrowse link
inner cell mass cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24036311) Ensembl
MGI		 PMID:24036311 GO_REF:0000107 NCBI chr 2:48,700,629...48,729,480
Ensembl chr 2:48,700,974...48,729,307 		JBrowse link
G HNF1B HNF1 homeobox B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10518496) Ensembl
MGI		 PMID:10518496 GO_REF:0000107 NCBI chr12:39,143,119...39,201,631
Ensembl chr12:39,143,121...39,201,631 		JBrowse link
G NLE1 notchless homolog 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16611995) Ensembl
MGI		 PMID:16611995 GO_REF:0000107 NCBI chr12:40,035,518...40,044,395
Ensembl chr12:40,035,547...40,044,397 		JBrowse link
G TET1 tet methylcytosine dioxygenase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20639862), (PMID:21295276) Ensembl
MGI		 PMID:20639862 PMID:21295276 GO_REF:0000107 NCBI chr14:71,675,671...71,812,732
Ensembl chr14:71,675,671...71,815,618 		JBrowse link
inner cell mass cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LATS1 large tumor suppressor kinase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23824537) Ensembl
MGI		 PMID:23824537 GO_REF:0000107 NCBI chr 1:16,274,955...16,320,980
Ensembl chr 1:16,274,970...16,320,604 		JBrowse link
G LATS2 large tumor suppressor kinase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23824537) Ensembl
MGI		 PMID:23824537 GO_REF:0000107 NCBI chr11:1,225,523...1,265,970
Ensembl chr11:1,225,527...1,265,946 		JBrowse link
G PRDM14 PR/SET domain 14 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24183668) Ensembl
MGI		 PMID:24183668 GO_REF:0000107 NCBI chr 4:65,273,988...65,295,362
Ensembl chr 4:65,271,315...65,295,178 		JBrowse link
inner cell mass cell proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRCA2 BRCA2 DNA repair associated involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9171369) Ensembl
MGI		 PMID:9171369 GO_REF:0000107 NCBI chr11:8,805,950...8,858,128
Ensembl chr11:8,805,953...8,858,418 		JBrowse link
G BRD4 bromodomain containing 4 acts_upstream_of_or_within ISO (PMID:11997514) MGI PMID:11997514 NCBI chr 2:62,250,958...62,345,851
Ensembl chr 2:62,250,989...62,345,362 		JBrowse link
G CHEK1 checkpoint kinase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10859163) Ensembl
MGI		 PMID:10859163 GO_REF:0000107 NCBI chr 9:52,759,224...52,790,878
Ensembl chr 9:52,753,528...52,790,700 		JBrowse link
G COPS2 COP9 signalosome subunit 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12972599) Ensembl
MGI		 PMID:12972599 GO_REF:0000107 NCBI chr 1:122,542,324...122,574,462
Ensembl chr 1:122,542,387...122,578,858 		JBrowse link
G DMBT1 deleted in malignant brain tumors 1 acts_upstream_of_or_within ISO (PMID:15452149) MGI PMID:15452149 NCBI chr14:132,154,346...132,231,274 JBrowse link
G GINS1 GINS complex subunit 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16287864) Ensembl
MGI		 PMID:16287864 GO_REF:0000107 NCBI chr17:31,060,540...31,076,807
Ensembl chr17:31,060,650...31,080,314 		JBrowse link
G GINS4 GINS complex subunit 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24244394) Ensembl
MGI		 PMID:24244394 GO_REF:0000107 NCBI chr17:10,656,869...10,668,664
Ensembl chr17:10,656,884...10,668,664 		JBrowse link
G INTS1 integrator complex subunit 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17544522) Ensembl
MGI		 PMID:17544522 GO_REF:0000107 NCBI chr 3:979,403...1,005,584
Ensembl chr 3:979,405...1,005,527 		JBrowse link
G NCAPG2 non-SMC condensin II complex subunit G2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14729962) Ensembl
MGI		 PMID:14729962 GO_REF:0000107 NCBI chr18:653,182...713,825
Ensembl chr18:653,224...717,200 		JBrowse link
G NDEL1 nudE neurodevelopment protein 1 like 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16107726) Ensembl
MGI		 PMID:16107726 GO_REF:0000107 NCBI chr12:53,553,897...53,640,470
Ensembl chr12:53,557,175...53,640,457 		JBrowse link
G PALB2 partner and localizer of BRCA2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20484223) Ensembl
MGI		 PMID:20484223 GO_REF:0000107 NCBI chr 3:22,586,881...22,612,837
Ensembl chr 3:22,586,856...22,612,834 		JBrowse link
G PELO pelota mRNA surveillance and ribosome rescue factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12556505) Ensembl
MGI		 PMID:12556505 GO_REF:0000107 NCBI chr16:32,130,254...32,146,114
Ensembl chr16:32,142,034...32,148,287 		JBrowse link
G SALL4 spalt like transcription factor 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16790473) Ensembl
MGI		 PMID:16790473 GO_REF:0000107 NCBI chr17:53,082,610...53,103,023
Ensembl chr17:53,084,310...53,103,190 		JBrowse link
G SBDS SBDS ribosome maturation factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16914746) Ensembl
MGI		 PMID:16914746 GO_REF:0000107 NCBI chr 3:16,161,524...16,168,619
Ensembl chr 3:16,161,580...16,169,453 		JBrowse link
G SETDB1 SET domain bifurcated histone lysine methyltransferase 1 acts_upstream_of_or_within ISO (PMID:14993285) MGI PMID:14993285 NCBI chr 4:98,259,801...98,293,238
Ensembl chr 4:98,260,375...98,293,097 		JBrowse link
G TAF8 TATA-box binding protein associated factor 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11076765) Ensembl
MGI		 PMID:11076765 GO_REF:0000107 NCBI chr 7:37,179,270...37,209,588
Ensembl chr 7:37,180,828...37,204,690 		JBrowse link
G ZPR1 ZPR1 zinc finger involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:44,167,422...44,178,137
Ensembl chr 9:44,167,423...44,177,435 		JBrowse link
inner cell mass cellular morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LATS1 large tumor suppressor kinase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23824537) Ensembl
MGI		 PMID:23824537 GO_REF:0000107 NCBI chr 1:16,274,955...16,320,980
Ensembl chr 1:16,274,970...16,320,604 		JBrowse link
G LATS2 large tumor suppressor kinase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23824537) Ensembl
MGI		 PMID:23824537 GO_REF:0000107 NCBI chr11:1,225,523...1,265,970
Ensembl chr11:1,225,527...1,265,946 		JBrowse link
G SOX17 SRY-box transcription factor 17 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21146513) Ensembl
MGI		 PMID:21146513 GO_REF:0000107 NCBI chr 4:76,854,218...76,857,143
Ensembl chr 4:76,854,150...76,857,148 		JBrowse link
positive regulation of trophectodermal cell proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CSF2 colony stimulating factor 2 involved_in IMP (PMID:16792532), (PMID:24520418) AgBase PMID:16792532 PMID:24520418 NCBI chr 2:134,354,724...134,357,155
Ensembl chr 2:134,354,724...134,357,155 		JBrowse link
G GRN granulin precursor acts_upstream_of_or_within ISO (PMID:15901638) MGI PMID:15901638 NCBI chr12:18,893,772...18,900,444
Ensembl chr12:18,893,770...18,900,446 		JBrowse link
G IGF1 insulin like growth factor 1 involved_in ISO (PMID:24508636) AgBase PMID:24508636 NCBI chr 5:81,762,027...81,909,253
Ensembl chr 5:81,775,970...81,848,033 		JBrowse link
regulation of blastocyst development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGBL4 AGBL carboxypeptidase 4 acts_upstream_of_or_within ISO (PMID:29593216) MGI PMID:29593216 NCBI chr 6:161,953,495...163,216,282 JBrowse link
G KLF4 KLF transcription factor 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:29593216) Ensembl
MGI		 PMID:29593216 GO_REF:0000107 NCBI chr 1:248,604,817...248,609,574
Ensembl chr 1:248,604,820...248,609,035 		JBrowse link
G TTLL1 TTL family tubulin polyglutamylase complex subunit L1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:29593216) Ensembl
MGI		 PMID:29593216 GO_REF:0000107 NCBI chr 5:5,793,760...5,827,622
Ensembl chr 5:5,793,780...5,827,633 		JBrowse link
G TTLL4 tubulin tyrosine ligase like 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:29593216) Ensembl
MGI		 PMID:29593216 GO_REF:0000107 NCBI chr15:120,748,537...120,791,825
Ensembl chr15:120,773,185...120,793,194 		JBrowse link
trophectodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADA adenosine deaminase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9272950) Ensembl
MGI		 PMID:9272950 GO_REF:0000107 NCBI chr17:47,044,492...47,072,232
Ensembl chr17:47,044,497...47,072,245 		JBrowse link
G BYSL bystin like involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17242206) Ensembl
MGI		 PMID:17242206 GO_REF:0000107 NCBI chr 7:37,074,517...37,086,753
Ensembl chr 7:37,074,515...37,088,533 		JBrowse link
G CDH1 cadherin 1 acts_upstream_of_or_within ISO (PMID:17138661) MGI PMID:17138661 NCBI chr 6:18,075,487...18,155,986
Ensembl chr 6:18,075,480...18,155,986 		JBrowse link
G CDX2 caudal type homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16325584), (PMID:25397698)
(PMID:15788452), (PMID:20404091)
(PMID:25397698)		 Ensembl
MGI		 PMID:15788452 PMID:16325584 PMID:20404091 PMID:25397698 GO_REF:0000107 NCBI chr11:5,339,727...5,346,081
Ensembl chr11:5,339,716...5,346,057 		JBrowse link
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16579983) Ensembl
MGI		 PMID:16579983 GO_REF:0000107 NCBI chr 1:25,155,652...25,158,517
Ensembl chr 1:25,155,664...25,160,279 		JBrowse link
G CNOT1 CCR4-NOT transcription complex subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:20,271,593...20,372,300
Ensembl chr 6:20,271,596...20,372,245 		JBrowse link
G CNOT2 CCR4-NOT transcription complex subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:34,470,911...34,548,968
Ensembl chr 5:34,426,394...34,549,310 		JBrowse link
G CNOT3 CCR4-NOT transcription complex subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:55,975,628...55,993,140
Ensembl chr 6:55,973,612...55,991,287 		JBrowse link
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24036311) Ensembl
MGI		 PMID:24036311 GO_REF:0000107 NCBI chr 2:48,700,629...48,729,480
Ensembl chr 2:48,700,974...48,729,307 		JBrowse link
G EOMES eomesodermin acts_upstream_of_or_within ISO (PMID:16325584) MGI PMID:16325584 NCBI chr13:14,209,590...14,216,184
Ensembl chr13:14,209,736...14,215,797 		JBrowse link
G FOXD3 forkhead box D3 acts_upstream_of_or_within ISO (PMID:16039639) MGI PMID:16039639 NCBI chr 6:149,153,397...149,155,576
Ensembl chr 6:149,154,033...149,155,478 		JBrowse link
G HAND1 heart and neural crest derivatives expressed 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:68,679,977...68,683,346
Ensembl chr16:68,677,963...68,683,342 		JBrowse link
G HOPX HOP homeobox acts_upstream_of_or_within ISO (PMID:17576768) MGI PMID:17576768 NCBI chr 8:55,862,191...55,901,628 JBrowse link
G JUNB JunB proto-oncogene, AP-1 transcription factor subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11456449)
(PMID:10022836)		 Ensembl
MGI		 PMID:10022836 PMID:11456449 GO_REF:0000107 NCBI chr 2:66,214,086...66,219,435
Ensembl chr 2:66,214,138...66,217,002 		JBrowse link
G NODAL nodal growth differentiation factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11456449) Ensembl
MGI		 PMID:11456449 GO_REF:0000107 NCBI chr14:73,350,358...73,357,064
Ensembl chr14:73,353,258...73,360,654 		JBrowse link
G POU5F1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (PMID:16325584) MGI PMID:16325584 NCBI chr 7:23,564,654...23,570,691 JBrowse link
G RBM46 RNA binding motif protein 46 acts_upstream_of_or_within ISO (PMID:25397698) MGI PMID:25397698 NCBI chr 8:74,337,324...74,383,044
Ensembl chr 8:74,337,319...74,382,515 		JBrowse link
G SOX2 SRY-box transcription factor 2 acts_upstream_of ISO (PMID:17507372) MGI PMID:17507372 NCBI chr13:119,668,476...119,669,435
Ensembl chr13:119,668,476...119,669,435 		JBrowse link
G SP1 Sp1 transcription factor acts_upstream_of_or_within ISO (PMID:17584888) MGI PMID:17584888 NCBI chr 5:18,588,763...18,633,177
Ensembl chr 5:18,588,758...18,630,089 		JBrowse link
G SP3 Sp3 transcription factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17584888) Ensembl
MGI		 PMID:17584888 GO_REF:0000107 NCBI chr15:79,935,986...79,990,139
Ensembl chr15:79,935,994...80,025,850 		JBrowse link
G SRF serum response factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:17576768) MGI
Ensembl		 PMID:17576768 GO_REF:0000107 NCBI chr 7:38,213,300...38,223,686
Ensembl chr 7:38,213,487...38,222,144 		JBrowse link
G TFAP2C transcription factor AP-2 gamma acts_upstream_of_or_within ISO (PMID:20404091) MGI PMID:20404091 NCBI chr17:57,164,400...57,174,923
Ensembl chr17:57,164,404...57,174,107 		JBrowse link
G YAP1 Yes1 associated transcriptional regulator involved_in
acts_upstream_of		 IEA
ISO		 (PMID:26902285) Ensembl
MGI		 PMID:26902285 GO_REF:0000107 NCBI chr 9:32,811,629...32,924,926
Ensembl chr 9:32,811,416...32,925,603 		JBrowse link
trophectodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POU5F1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (PMID:10742100) MGI PMID:10742100 NCBI chr 7:23,564,654...23,570,691 JBrowse link
G TEAD4 TEA domain transcription factor 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18083014) Ensembl
MGI		 PMID:18083014 GO_REF:0000107 NCBI chr 5:67,130,392...67,167,579
Ensembl chr 5:67,118,317...67,194,072 		JBrowse link
trophectodermal cell proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR1C activin A receptor type 1C acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15150278) MGI
Ensembl		 PMID:15150278 GO_REF:0000107 NCBI chr15:64,452,632...64,529,329
Ensembl chr15:64,455,989...64,529,107 		JBrowse link
G COPS2 COP9 signalosome subunit 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12972599) Ensembl
MGI		 PMID:12972599 GO_REF:0000107 NCBI chr 1:122,542,324...122,574,462
Ensembl chr 1:122,542,387...122,578,858 		JBrowse link
G DICER1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (PMID:20708584) MGI PMID:20708584 NCBI chr 7:116,361,630...116,436,471
Ensembl chr 7:116,365,802...116,411,224 		JBrowse link
G ESRRB estrogen related receptor beta acts_upstream_of_or_within ISO (PMID:9285590) MGI PMID:9285590 NCBI chr 7:99,511,135...99,699,478
Ensembl chr 7:99,514,168...99,699,011 		JBrowse link
G GRN granulin precursor acts_upstream_of ISO (PMID:15901638) MGI PMID:15901638 NCBI chr12:18,893,772...18,900,444
Ensembl chr12:18,893,770...18,900,446 		JBrowse link
G ZPR1 ZPR1 zinc finger involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:44,167,422...44,178,137
Ensembl chr 9:44,167,423...44,177,435 		JBrowse link
trophectodermal cellular morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CUL3 cullin 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10500095) Ensembl
MGI		 PMID:10500095 GO_REF:0000107 NCBI chr15:126,191,605...126,287,148
Ensembl chr15:126,189,851...126,287,005 		JBrowse link
G ESRRB estrogen related receptor beta acts_upstream_of_or_within ISO (PMID:9285590) MGI PMID:9285590 NCBI chr 7:99,511,135...99,699,478
Ensembl chr 7:99,514,168...99,699,011 		JBrowse link
G NODAL nodal growth differentiation factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11456449) Ensembl
MGI		 PMID:11456449 GO_REF:0000107 NCBI chr14:73,350,358...73,357,064
Ensembl chr14:73,353,258...73,360,654 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17801
    developmental process 6727
      anatomical structure development 6324
        blastocyst development 155
          blastocyst formation + 59
          blastocyst growth + 32
          blastocyst hatching 36
          regulation of blastocyst development 4
Path 2
Term Annotations click to browse term
  biological_process 17801
    developmental process 6727
      anatomical structure development 6324
        multicellular organism development 5115
          embryo development 1329
            embryo development ending in birth or egg hatching 875
              chordate embryonic development 858
                in utero embryonic development 553
                  blastocyst development 155
                    blastocyst formation + 59
                    blastocyst growth + 32
                    blastocyst hatching 36
                    regulation of blastocyst development 4
paths to the root