SALL4 (spalt like transcription factor 4) - Rat Genome Database

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Gene: SALL4 (spalt like transcription factor 4) Sus scrofa
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Symbol: SALL4
Name: spalt like transcription factor 4
RGD ID: 13869038
Description: ENCODES a protein that exhibits ATP binding (inferred); ATP hydrolysis activity (inferred); ATPase-coupled intramembrane lipid transporter activity (inferred); INVOLVED IN embryonic limb morphogenesis (ortholog); heart development (ortholog); in utero embryonic development (ortholog); ASSOCIATED WITH Congenital Limb Deformities (ortholog); Craniofacial Abnormalities (ortholog); Duane retraction syndrome (ortholog); FOUND IN early endosome (inferred); early endosome membrane (inferred); heterochromatin (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: sal-like 4; sal-like protein 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1753,084,310 - 53,103,190 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11753,082,610 - 53,103,023 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21759,526,086 - 59,533,416 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SALL4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1753,084,310 - 53,103,190 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11753,082,610 - 53,103,023 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21759,526,086 - 59,533,416 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SALL4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382051,782,331 - 51,802,521 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2051,782,331 - 51,802,521 (-)EnsemblGRCh38hg38GRCh38
GRCh372050,398,870 - 50,419,060 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362049,833,988 - 49,852,421 (-)NCBINCBI36Build 36hg18NCBI36
Build 342049,833,991 - 49,852,421NCBI
Celera2047,105,283 - 47,123,757 (-)NCBICelera
Cytogenetic Map20q13.2NCBI
HuRef2047,147,931 - 47,166,405 (-)NCBIHuRef
CHM1_12050,305,475 - 50,323,937 (-)NCBICHM1_1
T2T-CHM13v2.02053,553,791 - 53,573,978 (-)NCBIT2T-CHM13v2.0
Sall4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392168,590,252 - 168,609,121 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2168,590,252 - 168,609,863 (-)EnsemblGRCm39 Ensembl
GRCm382168,748,332 - 168,767,201 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2168,748,332 - 168,767,943 (-)EnsemblGRCm38mm10GRCm38
MGSCv372168,573,832 - 168,592,701 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362168,440,991 - 168,458,333 (-)NCBIMGSCv36mm8
Celera2174,694,286 - 174,713,507 (-)NCBICelera
Cytogenetic Map2H3NCBI
cM Map288.99NCBI
Sall4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83177,891,705 - 177,909,743 (-)NCBIGRCr8
mRatBN7.23157,474,067 - 157,491,055 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3157,474,642 - 157,490,822 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.03165,520,155 - 165,538,176 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3165,520,392 - 165,537,940 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03171,656,504 - 171,674,423 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera3156,038,840 - 156,055,436 (-)NCBICelera
Cytogenetic Map3q42NCBI
Sall4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554456,824,770 - 6,842,187 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554456,824,797 - 6,841,141 (+)NCBIChiLan1.0ChiLan1.0
SALL4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22157,535,985 - 57,556,278 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12057,529,106 - 57,549,399 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02048,130,387 - 48,150,569 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12049,252,320 - 49,272,973 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2049,254,039 - 49,273,589 (-)Ensemblpanpan1.1panPan2
SALL4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12437,941,498 - 37,959,713 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2437,940,034 - 38,037,287 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2437,180,959 - 37,200,584 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02438,651,355 - 38,669,523 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2438,649,920 - 38,749,658 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12437,887,041 - 37,905,946 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02438,020,086 - 38,039,234 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02438,565,716 - 38,585,336 (-)NCBIUU_Cfam_GSD_1.0
Sall4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640187,831,936 - 187,849,998 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365143,285,531 - 3,303,644 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365143,285,778 - 3,302,179 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SALL4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1212,179,721 - 12,199,629 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl212,182,357 - 12,199,321 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605060,576,222 - 60,593,578 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sall4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247904,162,454 - 4,170,923 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247904,153,157 - 4,170,813 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SALL4
780 total Variants

Expression


Sequence


RefSeq Acc Id: ENSSSCT00000008185   ⟹   ENSSSCP00000007968
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1752,938,725 - 53,072,201 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000008186   ⟹   ENSSSCP00000007969
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1753,084,310 - 53,103,190 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000032685   ⟹   ENSSSCP00000028440
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1752,938,725 - 53,072,201 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000032778   ⟹   ENSSSCP00000029990
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1752,943,868 - 53,072,379 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000033810   ⟹   ENSSSCP00000030047
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1752,938,725 - 53,043,416 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000073607   ⟹   ENSSSCP00000068333
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1752,938,725 - 53,072,201 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000082347   ⟹   ENSSSCP00000061100
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1752,938,725 - 53,043,416 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000082947   ⟹   ENSSSCP00000062604
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1752,936,173 - 53,091,722 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000088079   ⟹   ENSSSCP00000061712
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1752,938,725 - 53,043,416 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000090498   ⟹   ENSSSCP00000073771
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1753,084,312 - 53,103,190 (-)Ensembl
RefSeq Acc Id: NM_001114673   ⟹   NP_001108145
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11753,084,312 - 53,103,023 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021077202   ⟹   XP_020932861
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11753,082,610 - 53,101,152 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020932861   ⟸   XM_021077202
- Peptide Label: isoform X1
- UniProtKB: A0A8D1AZH0 (UniProtKB/TrEMBL),   F6Q2W9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001108145   ⟸   NM_001114673
- UniProtKB: A5GFR9 (UniProtKB/TrEMBL),   F6Q2W9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000061712   ⟸   ENSSSCT00000088079
RefSeq Acc Id: ENSSSCP00000068333   ⟸   ENSSSCT00000073607
RefSeq Acc Id: ENSSSCP00000073771   ⟸   ENSSSCT00000090498
RefSeq Acc Id: ENSSSCP00000028440   ⟸   ENSSSCT00000032685
RefSeq Acc Id: ENSSSCP00000029990   ⟸   ENSSSCT00000032778
RefSeq Acc Id: ENSSSCP00000007969   ⟸   ENSSSCT00000008186
RefSeq Acc Id: ENSSSCP00000007968   ⟸   ENSSSCT00000008185
RefSeq Acc Id: ENSSSCP00000061100   ⟸   ENSSSCT00000082347
RefSeq Acc Id: ENSSSCP00000030047   ⟸   ENSSSCT00000033810
RefSeq Acc Id: ENSSSCP00000062604   ⟸   ENSSSCT00000082947

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000007478 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00000053517 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015009537 UniProtKB/TrEMBL
  ENSSSCG00030003770 UniProtKB/TrEMBL
  ENSSSCG00035070322 UniProtKB/TrEMBL
  ENSSSCG00040049535 UniProtKB/TrEMBL
  ENSSSCG00045028769 UniProtKB/TrEMBL
  ENSSSCG00050054821 UniProtKB/TrEMBL
  ENSSSCG00055001932 UniProtKB/TrEMBL
  ENSSSCG00065066442 UniProtKB/TrEMBL
  ENSSSCG00070018091 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000008185.5 UniProtKB/TrEMBL
  ENSSSCT00000008186 ENTREZGENE
  ENSSSCT00000008186.4 UniProtKB/TrEMBL
  ENSSSCT00000032685.4 UniProtKB/TrEMBL
  ENSSSCT00000032778.4 UniProtKB/TrEMBL
  ENSSSCT00000033810.4 UniProtKB/TrEMBL
  ENSSSCT00000073607.2 UniProtKB/TrEMBL
  ENSSSCT00000082347.2 UniProtKB/TrEMBL
  ENSSSCT00000088079.2 UniProtKB/TrEMBL
  ENSSSCT00000090498.1 UniProtKB/TrEMBL
  ENSSSCT00015012652.1 UniProtKB/TrEMBL
  ENSSSCT00015012691.1 UniProtKB/TrEMBL
  ENSSSCT00015012727.1 UniProtKB/TrEMBL
  ENSSSCT00030004922.1 UniProtKB/TrEMBL
  ENSSSCT00030004933.1 UniProtKB/TrEMBL
  ENSSSCT00030004950.1 UniProtKB/TrEMBL
  ENSSSCT00035095055.1 UniProtKB/TrEMBL
  ENSSSCT00035095068.1 UniProtKB/TrEMBL
  ENSSSCT00035095086.1 UniProtKB/TrEMBL
  ENSSSCT00040066961.1 UniProtKB/TrEMBL
  ENSSSCT00040067016.1 UniProtKB/TrEMBL
  ENSSSCT00040067056.1 UniProtKB/TrEMBL
  ENSSSCT00045049163.1 UniProtKB/TrEMBL
  ENSSSCT00045049242.1 UniProtKB/TrEMBL
  ENSSSCT00045049292.1 UniProtKB/TrEMBL
  ENSSSCT00050074783.1 UniProtKB/TrEMBL
  ENSSSCT00050074786.1 UniProtKB/TrEMBL
  ENSSSCT00050074787.1 UniProtKB/TrEMBL
  ENSSSCT00055003594.1 UniProtKB/TrEMBL
  ENSSSCT00055003617.1 UniProtKB/TrEMBL
  ENSSSCT00055003628.1 UniProtKB/TrEMBL
  ENSSSCT00065091219.1 UniProtKB/TrEMBL
  ENSSSCT00065091230.1 UniProtKB/TrEMBL
  ENSSSCT00065091235.1 UniProtKB/TrEMBL
  ENSSSCT00070035691.1 UniProtKB/TrEMBL
  ENSSSCT00070035695.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.1110.10 UniProtKB/TrEMBL
  3.40.50.1000 UniProtKB/TrEMBL
  Calcium-transporting ATPase, cytoplasmic transduction domain A UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro ATPase_P-typ_cyto_dom_N UniProtKB/TrEMBL
  ATPase_P-typ_P_site UniProtKB/TrEMBL
  ATPase_P-typ_TM_dom_sf UniProtKB/TrEMBL
  ATPase_P-typ_transduc_dom_A_sf UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/TrEMBL
  HAD_sf UniProtKB/TrEMBL
  P-type_ATPase_IV UniProtKB/TrEMBL
  P-type_ATPase_N UniProtKB/TrEMBL
  P_typ_ATPase UniProtKB/TrEMBL
  P_typ_ATPase_c UniProtKB/TrEMBL
  P_typ_ATPase_HD_dom UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report ssc:100136902 UniProtKB/TrEMBL
NCBI Gene SALL4 ENTREZGENE
PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE UniProtKB/TrEMBL
  PTHR24092:SF49 UniProtKB/TrEMBL
  SAL-LIKE PROTEIN UniProtKB/TrEMBL
  SAL-LIKE PROTEIN 4 UniProtKB/TrEMBL
Pfam Cation_ATPase UniProtKB/TrEMBL
  E1-E2_ATPase UniProtKB/TrEMBL
  Hydrolase UniProtKB/TrEMBL
  PhoLip_ATPase_C UniProtKB/TrEMBL
  PhoLip_ATPase_N UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PRINTS CATATPASE UniProtKB/TrEMBL
PROSITE ATPASE_E1_E2 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF56784 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
  SSF81653 UniProtKB/TrEMBL
  SSF81660 UniProtKB/TrEMBL
  SSF81665 UniProtKB/TrEMBL
UniProt A0A4X1UIL3_PIG UniProtKB/TrEMBL
  A0A4X1UNR8_PIG UniProtKB/TrEMBL
  A0A5G2Q9U0_PIG UniProtKB/TrEMBL
  A0A5G2QB81_PIG UniProtKB/TrEMBL
  A0A5G2QU09_PIG UniProtKB/TrEMBL
  A0A5G2R9N1_PIG UniProtKB/TrEMBL
  A0A8D0MMQ8_PIG UniProtKB/TrEMBL
  A0A8D0TVG7_PIG UniProtKB/TrEMBL
  A0A8D0V840_PIG UniProtKB/TrEMBL
  A0A8D1AZH0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1BTU9_PIG UniProtKB/TrEMBL
  A0A8D1EX95_PIG UniProtKB/TrEMBL
  A0A8D1IJY7_PIG UniProtKB/TrEMBL
  A0A8D1IK17_PIG UniProtKB/TrEMBL
  A0A8D1N1Z4_PIG UniProtKB/TrEMBL
  A0A8D1TJD6_PIG UniProtKB/TrEMBL
  A0A8D1ZNF3_PIG UniProtKB/TrEMBL
  A5GFR9 ENTREZGENE, UniProtKB/TrEMBL
  A5GFS0_PIG UniProtKB/TrEMBL
  F6Q2W9 ENTREZGENE, UniProtKB/TrEMBL
  F6Q2X8_PIG UniProtKB/TrEMBL
  K7GKR3_PIG UniProtKB/TrEMBL
  K7GQ24_PIG UniProtKB/TrEMBL
  K7GQ80_PIG UniProtKB/TrEMBL