RAD51B (RAD51 paralog B) - Rat Genome Database

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Gene: RAD51B (RAD51 paralog B) Sus scrofa
Analyze
Symbol: RAD51B
Name: RAD51 paralog B
RGD ID: 13993290
Description: ENCODES a protein that exhibits four-way junction DNA binding (ortholog); INVOLVED IN blastocyst growth (ortholog); in utero embryonic development (ortholog); positive regulation of cell population proliferation (ortholog); PARTICIPATES IN homologous recombination pathway of double-strand break repair; ASSOCIATED WITH Breast Neoplasms (ortholog); genetic disease (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN membrane (inferred); nucleus (inferred); Rad51B-Rad51C-Rad51D-XRCC2 complex (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DNA repair protein RAD51 homolog 2; RAD51 homolog B; RAD51-like 1; RAD51L1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl791,592,424 - 92,345,294 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1791,592,413 - 92,301,383 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2797,899,832 - 98,613,557 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RAD51B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl791,592,424 - 92,345,294 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1791,592,413 - 92,301,383 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2797,899,832 - 98,613,557 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RAD51B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381467,819,779 - 68,683,096 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1467,819,779 - 68,730,218 (+)EnsemblGRCh38hg38GRCh38
GRCh371468,286,496 - 69,149,813 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361467,356,262 - 68,132,367 (+)NCBINCBI36Build 36hg18NCBI36
Build 341467,356,261 - 68,014,562NCBI
Celera1448,345,516 - 49,121,494 (+)NCBICelera
Cytogenetic Map14q24.1NCBI
HuRef1448,455,813 - 49,231,230 (+)NCBIHuRef
CHM1_11468,225,211 - 69,001,135 (+)NCBICHM1_1
T2T-CHM13v2.01462,026,883 - 62,889,971 (+)NCBIT2T-CHM13v2.0
Rad51b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391279,344,032 - 79,895,034 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1279,344,056 - 79,861,464 (+)EnsemblGRCm39 Ensembl
GRCm381279,297,282 - 79,848,260 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1279,297,282 - 79,814,690 (+)EnsemblGRCm38mm10GRCm38
MGSCv371280,398,269 - 80,915,677 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361280,216,122 - 80,733,530 (+)NCBIMGSCv36mm8
Celera1280,761,261 - 81,278,996 (+)NCBICelera
Cytogenetic Map12C3NCBI
cM Map1235.51NCBI
Rad51b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86103,829,390 - 104,373,923 (+)NCBIGRCr8
mRatBN7.2698,096,525 - 98,640,988 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl698,098,868 - 98,640,979 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx698,525,988 - 99,062,959 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0698,825,134 - 99,362,047 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0698,211,622 - 98,750,469 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06102,473,978 - 103,018,185 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6102,477,036 - 102,512,505 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06115,160,014 - 115,699,112 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46102,069,799 - 102,134,176 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera696,481,576 - 97,009,269 (+)NCBICelera
Cytogenetic Map6q24NCBI
Rad51b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554662,137,192 - 2,381,450 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554661,686,472 - 2,388,146 (-)NCBIChiLan1.0ChiLan1.0
RAD51B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21568,926,972 - 69,844,939 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11468,145,747 - 69,061,558 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01448,399,345 - 49,314,577 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11467,277,400 - 68,189,780 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1467,281,148 - 68,110,693 (+)Ensemblpanpan1.1panPan2
RAD51B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1841,779,435 - 42,357,362 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl841,778,714 - 42,357,298 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha841,469,217 - 42,151,951 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0842,009,371 - 42,691,934 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl842,009,155 - 42,586,658 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1841,624,025 - 42,306,963 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0841,699,024 - 42,381,539 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0842,056,861 - 42,740,806 (+)NCBIUU_Cfam_GSD_1.0
Rad51b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864062,431,048 - 62,999,072 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649511,195,767 - 11,467,458 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649511,185,560 - 11,762,254 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAD51B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12445,056,485 - 45,704,394 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605333,285,609 - 34,057,636 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rad51b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473432,560,579 - 33,173,357 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RAD51B
20296 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 10 4 3 5 2 23 2 3 3
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005656349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021099931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021099932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021099933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021099934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021099935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021099936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021099937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021099938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021099939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021099940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021099941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK392536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT797462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT841552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU393637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU694885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01098154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSSCT00000023246   ⟹   ENSSSCP00000021921
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl791,592,424 - 92,176,535 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000077443   ⟹   ENSSSCP00000070304
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl791,592,434 - 91,641,024 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000087100   ⟹   ENSSSCP00000073155
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl791,592,424 - 92,345,294 (+)Ensembl
RefSeq Acc Id: XM_005656349   ⟹   XP_005656406
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1791,592,413 - 92,175,997 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021099931   ⟹   XP_020955590
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1791,592,413 - 92,175,511 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021099932   ⟹   XP_020955591
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1791,592,590 - 92,175,511 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021099933   ⟹   XP_020955592
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1791,592,461 - 92,175,511 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021099934   ⟹   XP_020955593
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1791,592,435 - 92,175,511 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021099935   ⟹   XP_020955594
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1791,592,413 - 92,301,383 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021099936   ⟹   XP_020955595
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1791,592,413 - 92,175,511 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021099937   ⟹   XP_020955596
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1791,592,435 - 92,175,511 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021099938   ⟹   XP_020955597
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1791,592,413 - 92,082,527 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021099939   ⟹   XP_020955598
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1791,592,413 - 92,175,997 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021099940   ⟹   XP_020955599
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1791,592,413 - 91,702,653 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021099941   ⟹   XP_020955600
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1791,592,413 - 91,812,676 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020955594   ⟸   XM_021099935
- Peptide Label: isoform X2
- UniProtKB: A0A480R919 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005656406   ⟸   XM_005656349
- Peptide Label: isoform X3
- UniProtKB: A0A480R919 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020955598   ⟸   XM_021099939
- Peptide Label: isoform X6
- UniProtKB: A0A4X1U1U7 (UniProtKB/TrEMBL),   I3LCZ3 (UniProtKB/TrEMBL),   A0A480R919 (UniProtKB/TrEMBL),   A0A8D0MZU7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020955590   ⟸   XM_021099931
- Peptide Label: isoform X1
- UniProtKB: A0A480R919 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020955595   ⟸   XM_021099936
- Peptide Label: isoform X4
- UniProtKB: A0A480R919 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020955597   ⟸   XM_021099938
- Peptide Label: isoform X5
- UniProtKB: A0A8D1IM96 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020955600   ⟸   XM_021099941
- Peptide Label: isoform X8
- UniProtKB: A0A8D1C3W6 (UniProtKB/TrEMBL),   A0A8D1N391 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020955599   ⟸   XM_021099940
- Peptide Label: isoform X7
- UniProtKB: A0A8D1IM96 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020955593   ⟸   XM_021099934
- Peptide Label: isoform X1
- UniProtKB: A0A480R919 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020955596   ⟸   XM_021099937
- Peptide Label: isoform X4
- UniProtKB: A0A480R919 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020955592   ⟸   XM_021099933
- Peptide Label: isoform X1
- UniProtKB: A0A480R919 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020955591   ⟸   XM_021099932
- Peptide Label: isoform X1
- UniProtKB: A0A480R919 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000070304   ⟸   ENSSSCT00000077443
RefSeq Acc Id: ENSSSCP00000073155   ⟸   ENSSSCT00000087100
RefSeq Acc Id: ENSSSCP00000021921   ⟸   ENSSSCT00000023246
Protein Domains
RecA family profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000028877 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005008731 UniProtKB/TrEMBL
  ENSSSCG00015018805 UniProtKB/TrEMBL
  ENSSSCG00030024807 UniProtKB/TrEMBL
  ENSSSCG00035020765 UniProtKB/TrEMBL
  ENSSSCG00045028318 UniProtKB/TrEMBL
  ENSSSCG00050058103 UniProtKB/TrEMBL
  ENSSSCG00060060652 UniProtKB/TrEMBL
  ENSSSCG00070014478 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000023246 ENTREZGENE
  ENSSSCT00000023246.4 UniProtKB/TrEMBL
  ENSSSCT00000077443.1 UniProtKB/TrEMBL
  ENSSSCT00000087100.1 UniProtKB/TrEMBL
  ENSSSCT00005013659.1 UniProtKB/TrEMBL
  ENSSSCT00005013699.1 UniProtKB/TrEMBL
  ENSSSCT00015024857.1 UniProtKB/TrEMBL
  ENSSSCT00030034645.1 UniProtKB/TrEMBL
  ENSSSCT00030034655.1 UniProtKB/TrEMBL
  ENSSSCT00030034694.1 UniProtKB/TrEMBL
  ENSSSCT00035027015.1 UniProtKB/TrEMBL
  ENSSSCT00035027019.1 UniProtKB/TrEMBL
  ENSSSCT00045048263.1 UniProtKB/TrEMBL
  ENSSSCT00045048380.1 UniProtKB/TrEMBL
  ENSSSCT00045048579.1 UniProtKB/TrEMBL
  ENSSSCT00050079214.1 UniProtKB/TrEMBL
  ENSSSCT00050079264.1 UniProtKB/TrEMBL
  ENSSSCT00050079269.1 UniProtKB/TrEMBL
  ENSSSCT00060082758.1 UniProtKB/TrEMBL
  ENSSSCT00060082782.1 UniProtKB/TrEMBL
  ENSSSCT00060082799.1 UniProtKB/TrEMBL
  ENSSSCT00060082869.1 UniProtKB/TrEMBL
  ENSSSCT00070028407.1 UniProtKB/TrEMBL
  ENSSSCT00070028417.1 UniProtKB/TrEMBL
  ENSSSCT00070028429.1 UniProtKB/TrEMBL
  ENSSSCT00070028437.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  DNA_recomb/repair_Rad51_C UniProtKB/TrEMBL
  DNA_recomb/repair_RecA-like UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  RAD51B UniProtKB/TrEMBL
  RecA_ATP-bd UniProtKB/TrEMBL
NCBI Gene RAD51B ENTREZGENE
PANTHER DNA REPAIR PROTEIN RAD51 HOMOLOG 2 UniProtKB/TrEMBL
  PTHR46456 UniProtKB/TrEMBL
Pfam Rad51 UniProtKB/TrEMBL
PIRSF Rad51 UniProtKB/TrEMBL
PROSITE RECA_2 UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A480R919 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1U1T8_PIG UniProtKB/TrEMBL
  A0A4X1U1U7 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1U1V8_PIG UniProtKB/TrEMBL
  A0A4X1U1W2_PIG UniProtKB/TrEMBL
  A0A5G2RGG8_PIG UniProtKB/TrEMBL
  A0A8D0MZU7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1C3W6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1IM96 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1N391 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1W8P7_PIG UniProtKB/TrEMBL
  I3LCZ3 ENTREZGENE
UniProt Secondary A0A5G2R7V0 UniProtKB/TrEMBL
  I3LCZ3 UniProtKB/TrEMBL
VGNC ID VGNC:92058 ENTREZGENE