UBTFL1 (upstream binding transcription factor like 1) - Rat Genome Database

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Gene: UBTFL1 (upstream binding transcription factor like 1) Sus scrofa
Analyze
Symbol: UBTFL1
Name: upstream binding transcription factor like 1
RGD ID: 14284981
Description: ENCODES a protein that exhibits DNA binding (inferred); INVOLVED IN blastocyst growth (ortholog); embryo implantation (ortholog); regulation of gene expression (ortholog); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: upstream binding transcription factor, RNA polymerase I-like 1; upstream-binding factor 1-like protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1923,060,755 - 23,069,983 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics

Comparative Map Data
UBTFL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1923,060,755 - 23,069,983 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
UBTFL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381190,085,950 - 90,087,131 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1190,085,950 - 90,087,131 (+)EnsemblGRCh38hg38GRCh38
GRCh371189,819,118 - 89,820,299 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361189,458,757 - 89,459,947 (+)NCBINCBI36Build 36hg18NCBI36
Celera1185,144,267 - 85,145,448 (+)NCBICelera
Cytogenetic Map11q14.3NCBI
HuRef1185,903,248 - 85,904,429 (+)NCBIHuRef
CHM1_11189,702,145 - 89,703,327 (+)NCBICHM1_1
T2T-CHM13v2.01190,006,027 - 90,007,208 (+)NCBIT2T-CHM13v2.0
Ubtfl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39918,315,714 - 18,322,798 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl918,315,714 - 18,324,473 (+)EnsemblGRCm39 Ensembl
GRCm38918,404,418 - 18,411,502 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl918,404,418 - 18,413,177 (+)EnsemblGRCm38mm10GRCm38
MGSCv37918,208,862 - 18,215,946 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36918,154,820 - 18,161,904 (+)NCBIMGSCv36mm8
Celera915,688,053 - 15,695,137 (+)NCBICelera
Cytogenetic Map9A2NCBI
cM Map97.04NCBI
Ubtfl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8823,787,567 - 23,788,754 (-)NCBIGRCr8
mRatBN7.2815,511,217 - 15,512,404 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl816,073,983 - 16,075,170 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0817,561,870 - 17,563,062 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl817,562,026 - 17,563,062 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0817,618,877 - 17,634,474 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4815,874,433 - 15,875,620 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1815,874,432 - 15,932,549 (-)NCBI
Celera816,939,658 - 16,940,845 (-)NCBICelera
Cytogenetic Map8q13NCBI
LOC117974918
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2951,230,026 - 51,231,397 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11151,263,372 - 51,265,241 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01148,971,442 - 48,972,814 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
Ubtfl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050582,121,221 - 2,122,460 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936933371,183 - 376,907 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBTFL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1181,168,060 - 81,173,080 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604344,573,493 - 44,575,528 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ubtfl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624845327,418 - 328,587 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624845326,830 - 328,587 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in UBTFL1
404 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

reproductive system
High
Medium
Low 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021102676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_021102676   ⟹   XP_020958335
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1923,060,755 - 23,069,983 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020958335 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000015850
  ENSSSCP00000015850.3
  ENSSSCP00055013116.1
  ENSSSCP00065034374.1
  ENSSSCP00070021352.1
Reference Protein Sequences
RefSeq Acc Id: XP_020958335   ⟸   XM_021102676
- UniProtKB: A0A8D2CCN9 (UniProtKB/TrEMBL),   F1STP6 (UniProtKB/TrEMBL),   A0A4X1TXZ1 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
HMG box


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000014929 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00055008512 UniProtKB/TrEMBL
  ENSSSCG00065057806 UniProtKB/TrEMBL
  ENSSSCG00070013211 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000016286 ENTREZGENE
  ENSSSCT00000016286.3 UniProtKB/TrEMBL
  ENSSSCT00055016627.1 UniProtKB/TrEMBL
  ENSSSCT00065079081.1 UniProtKB/TrEMBL
  ENSSSCT00070025738.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.30.10 UniProtKB/TrEMBL
InterPro HMG_box_dom UniProtKB/TrEMBL
  HMG_box_dom_sf UniProtKB/TrEMBL
NCBI Gene UBTFL1 ENTREZGENE
PANTHER UPSTREAM BINDING TRANSCRIPTION FACTOR UniProtKB/TrEMBL
  UPSTREAM-BINDING FACTOR 1-LIKE PROTEIN 1-RELATED UniProtKB/TrEMBL
Pfam HMG_box UniProtKB/TrEMBL
PROSITE HMG_BOX_2 UniProtKB/TrEMBL
SMART HMG UniProtKB/TrEMBL
Superfamily-SCOP SSF47095 UniProtKB/TrEMBL
UniProt A0A4X1TXZ1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D2CCN9 ENTREZGENE, UniProtKB/TrEMBL
  F1STP6 ENTREZGENE, UniProtKB/TrEMBL