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ONTOLOGY REPORT - ANNOTATIONS


Term:blastocyst growth
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Accession:GO:0001832 term browser browse the term
Definition:An increase in size of a blastocyst due to expansion of the blastocoelic cavity cell shape changes and cell proliferation.
Comment:See also the Anatomical Dictionary for Mouse Development ontology terms 'TS4, blastocoelic cavity ; EMAP:17', 'TS5, blastocoelic cavity ; EMAP:27' and 'TS6, blastocoelic cavity ; EMAP:36'.



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blastocyst growth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component acts_upstream_of_or_within ISO MGI:101893 (MGI:5528755|PMID:24036311) RGD PMID:24036311 MGI:5528755 NCBI chr 1:165,137,277...165,167,303
Ensembl chr 1:165,137,215...165,167,303
JBrowse link
G Ints1 integrator complex subunit 1 acts_upstream_of_or_within ISO MGI:3663683 (MGI:3722560|PMID:17544522) RGD PMID:17544522 MGI:3722560 NCBI chr12:14,861,312...14,886,048
Ensembl chr12:14,861,318...14,886,037
JBrowse link
G Nbn nibrin involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:2680772|PMID:14612522)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:14612522 GO_REF:0000024 GO_REF:0000107 MGI:2680772 NCBI chr 5:29,459,574...29,494,152
Ensembl chr 5:29,459,457...29,494,150
JBrowse link
G Pou5f1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO MGI:109345 (MGI:5528755|PMID:24036311) RGD PMID:24036311 MGI:5528755 NCBI chr20:3,223,128...3,227,891
Ensembl chr20:3,223,129...3,227,891
JBrowse link
G Rad51b RAD51 paralog B acts_upstream_of_or_within ISO MGI:3621480 (MGI:1349263|PMID:10567591) RGD PMID:10567591 MGI:1349263 NCBI chr 6:98,096,525...98,640,988
Ensembl chr 6:98,098,868...98,640,979
JBrowse link
G Rtf1 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) acts_upstream_of_or_within ISO (MGI:5528755|PMID:24036311) RGD PMID:24036311 MGI:5528755 NCBI chr 3:106,659,363...106,718,970
Ensembl chr 3:106,659,308...106,718,970
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO MGI:2386105 (MGI:1929360|PMID:11163203) RGD PMID:11163203 MGI:1929360 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975
JBrowse link
G Ubtfl1 upstream binding transcription factor like 1 acts_upstream_of_or_within ISO (MGI:4414743|PMID:19915186) RGD PMID:19915186 MGI:4414743
G Ubtfl6-ps1 UBTF like 6, pseudogene1 acts_upstream_of_or_within ISO (MGI:4414743|PMID:19915186) RGD PMID:19915186 MGI:4414743 NCBI chr 8:15,478,858...15,485,761 JBrowse link
G Zfp830 zinc finger protein 830 acts_upstream_of_or_within ISO MGI:3583779 (MGI:3582017|PMID:15988037) RGD PMID:15988037 MGI:3582017 NCBI chr10:67,701,340...67,702,804
Ensembl chr10:67,701,073...67,704,523
JBrowse link
inner cell mass cell proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brca2 BRCA2, DNA repair associated involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1930617 (MGI:707943|PMID:9171369)
Ensembl
RGD
PMID:9171369 GO_REF:0000107 MGI:707943 NCBI chr12:59,492...103,789
Ensembl chr12:59,819...100,567
JBrowse link
G Brd4 bromodomain containing 4 acts_upstream_of_or_within ISO MGI:2674141 (MGI:2179909|PMID:11997514) RGD PMID:11997514 MGI:2179909 NCBI chr 7:11,216,446...11,296,029
Ensembl chr 7:11,216,446...11,295,539
JBrowse link
G Chek1 checkpoint kinase 1 acts_upstream_of_or_within ISO MGI:1928818 (MGI:1860048|PMID:10859163) RGD PMID:10859163 MGI:1860048 NCBI chr 8:36,420,565...36,443,477
Ensembl chr 8:36,420,569...36,441,009
JBrowse link
G Cops2 COP9 signalosome subunit 2 acts_upstream_of_or_within ISO MGI:2678281 (MGI:2676528|PMID:12972599) RGD PMID:12972599 MGI:2676528 NCBI chr 3:113,084,174...113,110,090
Ensembl chr 3:113,084,176...113,109,947
JBrowse link
G Dmbt1 deleted in malignant brain tumors 1 acts_upstream_of_or_within ISO (MGI:3057099|PMID:15452149) RGD PMID:15452149 MGI:3057099 NCBI chr 1:185,617,469...185,696,476
Ensembl chr 1:185,617,294...185,696,478
JBrowse link
G Gins1 GINS complex subunit 1 acts_upstream_of_or_within ISO MGI:3706309 (MGI:3703396|PMID:16287864) RGD PMID:16287864 MGI:3703396 NCBI chr 3:139,724,513...139,745,930
Ensembl chr 3:139,724,490...139,745,936
JBrowse link
G Gins4 GINS complex subunit 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:5575557 (MGI:5568335|PMID:24244394)
Ensembl
RGD
PMID:24244394 GO_REF:0000107 MGI:5568335 NCBI chr16:68,787,572...68,799,938
Ensembl chr16:68,767,339...68,802,273
JBrowse link
G Ints1 integrator complex subunit 1 acts_upstream_of_or_within ISO MGI:3663683 (MGI:3722560|PMID:17544522) RGD PMID:17544522 MGI:3722560 NCBI chr12:14,861,312...14,886,048
Ensembl chr12:14,861,318...14,886,037
JBrowse link
G Ncapg2 non-SMC condensin II complex, subunit G2 acts_upstream_of_or_within ISO MGI:3039486 (MGI:3027420|PMID:14729962) RGD PMID:14729962 MGI:3027420 NCBI chr 6:137,342,449...137,418,083
Ensembl chr 6:137,342,943...137,415,159
JBrowse link
G Ndel1 nudE neurodevelopment protein 1-like 1 acts_upstream_of_or_within ISO MGI:3589467 (MGI:3588829|PMID:16107726) RGD PMID:16107726 MGI:3588829 NCBI chr10:53,505,628...53,582,025
Ensembl chr10:53,516,491...53,570,907
JBrowse link
G Palb2 partner and localizer of BRCA2 acts_upstream_of_or_within ISO MGI:3801303 (MGI:4459579|PMID:20484223) RGD PMID:20484223 MGI:4459579 NCBI chr 1:176,665,076...176,689,053
Ensembl chr 1:176,665,076...176,688,990
JBrowse link
G Pelo pelota mRNA surveillance and ribosome rescue factor acts_upstream_of_or_within ISO MGI:2450933 (MGI:2450001|PMID:12556505) RGD PMID:12556505 MGI:2450001 NCBI chr 2:46,797,853...46,799,621
Ensembl chr 2:46,797,853...46,799,746
JBrowse link
G Prpf19 pre-mRNA processing factor 19 acts_upstream_of_or_within ISO MGI:3711357 (MGI:3709933|PMID:17283042) RGD PMID:17283042 MGI:3709933 NCBI chr 1:207,541,582...207,552,664
Ensembl chr 1:207,541,595...207,552,662
JBrowse link
G Sall4 spalt-like transcription factor 4 acts_upstream_of_or_within ISO MGI:3699175 (MGI:3698636|PMID:16790473) RGD PMID:16790473 MGI:3698636 NCBI chr 3:157,474,067...157,491,055
Ensembl chr 3:157,474,642...157,490,822
JBrowse link
G Sbds SBDS, ribosome maturation factor acts_upstream_of_or_within ISO MGI:3664792 (MGI:3655752|PMID:16914746) RGD PMID:16914746 MGI:3655752 NCBI chr12:26,420,410...26,429,650
Ensembl chr12:26,420,414...26,429,649
JBrowse link
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 acts_upstream_of_or_within ISO MGI:3040431 (MGI:3038026|PMID:14993285) RGD PMID:14993285 MGI:3038026 NCBI chr 2:182,898,738...182,930,283
Ensembl chr 2:182,898,738...182,930,506
JBrowse link
G Taf8 TATA-box binding protein associated factor 8 acts_upstream_of_or_within ISO MGI:3033758 (MGI:1926844|PMID:11076765) RGD PMID:11076765 MGI:1926844 NCBI chr 9:13,491,892...13,511,713
Ensembl chr 9:13,491,937...13,511,717
JBrowse link
G Zpr1 ZPR1 zinc finger involved_in ISO (MGI:3575865|PMID:15767679) RGD PMID:15767679 MGI:3575865 NCBI chr 8:46,564,898...46,574,719
Ensembl chr 8:46,565,146...46,574,719
JBrowse link
positive regulation of trophectodermal cell proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Csf2 colony stimulating factor 2 involved_in ISO (PMID:16792532), (PMID:24520418) RGD PMID:16792532 PMID:24520418 NCBI chr10:38,386,945...38,388,926
Ensembl chr10:38,386,945...38,389,199
JBrowse link
G Igf1 insulin-like growth factor 1 involved_in ISO
IEA
(PMID:24508636)
GO_REF:0000107
RGD
Ensembl
PMID:24508636 GO_REF:0000107 NCBI chr 7:22,282,895...22,361,972
Ensembl chr 7:22,282,930...22,359,296
JBrowse link
trophectodermal cell proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1c activin A receptor type 1C acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:15150278)
GO_REF:0000107
RGD
Ensembl
PMID:15150278 GO_REF:0000107 NCBI chr 3:42,815,490...42,892,423
Ensembl chr 3:42,822,610...42,892,327
JBrowse link
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO (MGI:4829413|PMID:20708584) RGD PMID:20708584 MGI:4829413 NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965
JBrowse link
G Esrrb estrogen-related receptor beta acts_upstream_of_or_within ISO MGI:1857422 (MGI:1095811|PMID:9285590) RGD PMID:9285590 MGI:1095811 NCBI chr 6:106,007,662...106,163,136
Ensembl chr 6:106,008,095...106,160,791
JBrowse link
G Zpr1 ZPR1 zinc finger involved_in ISO (MGI:3575865|PMID:15767679) RGD PMID:15767679 MGI:3575865 NCBI chr 8:46,564,898...46,574,719
Ensembl chr 8:46,565,146...46,574,719
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19834
    developmental process 6965
      developmental growth 842
        blastocyst growth 32
          inner cell mass cell proliferation 18
          trophectodermal cell proliferation + 6
Path 2
Term Annotations click to browse term
  biological_process 19834
    developmental process 6965
      anatomical structure development 6376
        multicellular organism development 5800
          embryo development 1365
            embryo development ending in birth or egg hatching 879
              chordate embryonic development 863
                in utero embryonic development 562
                  blastocyst development 159
                    blastocyst growth 32
                      inner cell mass cell proliferation 18
                      trophectodermal cell proliferation + 6
paths to the root