ETV2 (ETS variant transcription factor 2) - Rat Genome Database

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Gene: ETV2 (ETS variant transcription factor 2) Sus scrofa
Analyze
Symbol: ETV2
Name: ETS variant transcription factor 2
RGD ID: 14202234
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); DNA-binding transcription factor activity (inferred); INVOLVED IN blastocyst development (ortholog); blood vessel morphogenesis (ortholog); BMP signaling pathway (ortholog); ASSOCIATED WITH Aortic Remodeling (ortholog); Brugada syndrome 5 (ortholog); dystonia (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ETS translocation variant 2; ETS variant 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl645,087,100 - 45,089,626 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1645,085,984 - 45,089,592 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2640,543,308 - 40,546,424 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074   PMID:30032202   PMID:31990674  


Genomics

Comparative Map Data
ETV2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl645,087,100 - 45,089,626 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1645,085,984 - 45,089,592 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2640,543,308 - 40,546,424 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ETV2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381935,641,745 - 35,644,871 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1935,641,745 - 35,644,871 (+)EnsemblGRCh38hg38GRCh38
GRCh371936,132,647 - 36,135,773 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361940,824,487 - 40,827,613 (+)NCBINCBI36Build 36hg18NCBI36
Celera1932,846,129 - 32,849,256 (+)NCBICelera
Cytogenetic Map19q13.12NCBI
HuRef1932,637,910 - 32,641,036 (+)NCBIHuRef
CHM1_11936,134,179 - 36,137,305 (+)NCBICHM1_1
T2T-CHM13v2.01938,186,718 - 38,189,844 (+)NCBIT2T-CHM13v2.0
Etv2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39730,333,041 - 30,335,934 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl730,333,041 - 30,335,277 (-)EnsemblGRCm39 Ensembl
GRCm38730,633,616 - 30,636,509 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl730,633,616 - 30,635,852 (-)EnsemblGRCm38mm10GRCm38
MGSCv37731,418,635 - 31,420,871 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36730,342,378 - 30,344,612 (-)NCBIMGSCv36mm8
Celera725,225,816 - 25,227,677 (-)NCBICelera
Cytogenetic Map7B1NCBI
cM Map718.92NCBI
Etv2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8195,017,980 - 95,021,582 (-)NCBIGRCr8
mRatBN7.2185,890,562 - 85,894,025 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl185,890,559 - 85,893,431 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0189,091,239 - 89,094,570 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl189,091,239 - 89,094,530 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0190,246,861 - 90,250,074 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4185,684,698 - 85,686,914 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1185,762,809 - 85,765,732 (-)NCBI
Celera180,262,333 - 80,264,853 (-)NCBICelera
Cytogenetic Map1q21NCBI
Etv2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554684,857,595 - 4,860,531 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554684,857,023 - 4,859,926 (+)NCBIChiLan1.0ChiLan1.0
ETV2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22041,638,278 - 41,641,458 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11943,621,733 - 43,624,908 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01932,571,829 - 32,575,083 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11941,307,864 - 41,311,004 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1941,307,864 - 41,311,004 (+)Ensemblpanpan1.1panPan2
ETV2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11116,971,238 - 116,974,831 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1116,971,365 - 116,985,796 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1116,376,575 - 116,379,674 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01117,574,597 - 117,577,707 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1117,574,598 - 117,577,031 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11117,137,602 - 117,140,703 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01116,761,500 - 116,764,598 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01117,817,402 - 117,820,510 (-)NCBIUU_Cfam_GSD_1.0
Etv2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934910,971,607 - 10,974,730 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936570671,152 - 673,768 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ETV2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1630,552,780 - 30,556,374 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl630,553,931 - 30,556,355 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660738,348,216 - 8,351,726 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Etv2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247947,984,884 - 7,988,296 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247947,985,662 - 7,989,063 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ETV2
49 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 8 4 3 5 2 14 2 3 1
Below cutoff 1 7 2

Sequence


RefSeq Acc Id: ENSSSCT00000003211   ⟹   ENSSSCP00000003130
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl645,087,100 - 45,089,626 (+)Ensembl
RefSeq Acc Id: XM_021097205   ⟹   XP_020952864
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1645,085,984 - 45,089,592 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020952864 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000003130
  ENSSSCP00000003130.5
  ENSSSCP00015010586.1
  ENSSSCP00045036104.1
  ENSSSCP00055044008.1
  ENSSSCP00070015653.1
RefSeq Acc Id: XP_020952864   ⟸   XM_021097205
- UniProtKB: A0A4X1TI94 (UniProtKB/TrEMBL),   F1RLH8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000003130   ⟸   ENSSSCT00000003211
Protein Domains
ETS


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000002906 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015020475 UniProtKB/TrEMBL
  ENSSSCG00045030427 UniProtKB/TrEMBL
  ENSSSCG00055027870 UniProtKB/TrEMBL
  ENSSSCG00070009723 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000003211 ENTREZGENE
  ENSSSCT00000003211.5 UniProtKB/TrEMBL
  ENSSSCT00015027044.1 UniProtKB/TrEMBL
  ENSSSCT00045051878.1 UniProtKB/TrEMBL
  ENSSSCT00055055163.1 UniProtKB/TrEMBL
  ENSSSCT00070018844.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
InterPro Ets_dom UniProtKB/TrEMBL
  ETS_fam UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
NCBI Gene ETV2 ENTREZGENE
PANTHER ETS TRANSLOCATION VARIANT 2 UniProtKB/TrEMBL
  PTHR11849 UniProtKB/TrEMBL
Pfam Ets UniProtKB/TrEMBL
PRINTS ETSDOMAIN UniProtKB/TrEMBL
PROSITE ETS_DOMAIN_1 UniProtKB/TrEMBL
  ETS_DOMAIN_2 UniProtKB/TrEMBL
  ETS_DOMAIN_3 UniProtKB/TrEMBL
SMART ETS UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/TrEMBL
UniProt A0A4X1TI94 ENTREZGENE, UniProtKB/TrEMBL
  F1RLH8 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:87811 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-09-18 ETV2  ETS variant transcription factor 2  ETV2  ETS variant 2  Symbol and/or name change 5135510 APPROVED