JUNB (JunB proto-oncogene, AP-1 transcription factor subunit) - Rat Genome Database

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Gene: JUNB (JunB proto-oncogene, AP-1 transcription factor subunit) Sus scrofa
Analyze
Symbol: JUNB
Name: JunB proto-oncogene, AP-1 transcription factor subunit (Ensembl:JunB proto-onco, AP-1 transcription factor subunit)
RGD ID: 13876531
Description: ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); double-stranded DNA binding (ortholog); INVOLVED IN cell differentiation (ortholog); cellular response to calcium ion (ortholog); cellular response to hormone stimulus (ortholog); PARTICIPATES IN interleukin-6 signaling pathway; ASSOCIATED WITH alpha-mannosidosis (ortholog); anaplastic large cell lymphoma (ortholog); Charcot-Marie-Tooth disease dominant intermediate B (ortholog); FOUND IN RNA polymerase II transcription regulator complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transcription factor jun-B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl266,214,138 - 66,217,002 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1266,214,086 - 66,219,435 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2266,505,351 - 66,507,024 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
JUNB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl266,214,138 - 66,217,002 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1266,214,086 - 66,219,435 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2266,505,351 - 66,507,024 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JUNB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381912,791,486 - 12,793,315 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1912,791,486 - 12,793,315 (+)EnsemblGRCh38hg38GRCh38
GRCh371912,902,300 - 12,904,129 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361912,763,310 - 12,765,125 (+)NCBINCBI36Build 36hg18NCBI36
Build 341912,763,309 - 12,765,124NCBI
Celera1912,792,018 - 12,793,833 (+)NCBICelera
Cytogenetic Map19p13.13NCBI
HuRef1912,474,046 - 12,475,861 (+)NCBIHuRef
CHM1_11912,902,786 - 12,904,601 (+)NCBICHM1_1
T2T-CHM13v2.01912,915,978 - 12,917,807 (+)NCBIT2T-CHM13v2.0
Junb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39885,703,538 - 85,705,377 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl885,701,113 - 85,705,347 (-)EnsemblGRCm39 Ensembl
GRCm38884,976,909 - 84,978,748 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl884,976,910 - 84,978,718 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl884,974,484 - 84,978,718 (-)EnsemblGRCm38mm10GRCm38
MGSCv37887,500,811 - 87,502,617 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36887,867,037 - 87,868,853 (-)NCBIMGSCv36mm8
Celera889,271,597 - 89,273,403 (-)NCBICelera
Cytogenetic Map8C3NCBI
cM Map841.41NCBI
Junb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81940,081,126 - 40,082,910 (+)NCBIGRCr8
mRatBN7.21923,176,265 - 23,178,049 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1923,176,294 - 23,178,035 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1929,999,230 - 30,001,014 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01930,653,592 - 30,655,376 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01932,876,269 - 32,878,053 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01926,092,972 - 26,094,756 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1926,092,974 - 26,094,756 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01937,068,595 - 37,070,379 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41924,831,536 - 24,833,320 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11924,836,361 - 24,838,144 (+)NCBI
Celera1922,733,824 - 22,735,608 (+)NCBICelera
Cytogenetic Map19q11NCBI
Junb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541531,876,793 - 31,877,836 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541531,876,508 - 31,878,289 (+)NCBIChiLan1.0ChiLan1.0
JUNB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22017,719,743 - 17,722,658 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11916,721,421 - 16,723,263 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01912,353,760 - 12,355,598 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11913,097,640 - 13,099,474 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1913,097,931 - 13,098,974 (+)Ensemblpanpan1.1panPan2
JUNB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12049,358,904 - 49,360,746 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2049,359,399 - 49,360,442 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2049,232,549 - 49,234,383 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02049,877,333 - 49,879,167 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2049,877,347 - 49,879,306 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12049,088,428 - 49,090,262 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02049,514,724 - 49,516,558 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02049,757,409 - 49,759,245 (-)NCBIUU_Cfam_GSD_1.0
Junb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118208,462,083 - 208,463,925 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366591,891,080 - 1,892,123 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366591,890,786 - 1,892,619 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JUNB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1611,479,108 - 11,480,942 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl611,479,407 - 11,480,450 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660748,315,355 - 8,317,197 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Junb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624901403,235 - 404,269 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624901402,969 - 404,741 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in JUNB
65 total Variants

Expression


Sequence


RefSeq Acc Id: ENSSSCT00000015009   ⟹   ENSSSCP00000024354
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl266,214,138 - 66,217,002 (-)Ensembl
RefSeq Acc Id: XM_005674483   ⟹   XP_005674540
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1266,214,086 - 66,219,435 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005674540   ⟸   XM_005674483
- UniProtKB: I3LJU2 (UniProtKB/TrEMBL),   A0A4X1TJP7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000024354   ⟸   ENSSSCT00000015009
Protein Domains
bZIP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000013735 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015049386 UniProtKB/TrEMBL
  ENSSSCG00025065475 UniProtKB/TrEMBL
  ENSSSCG00030008122 UniProtKB/TrEMBL
  ENSSSCG00035048176 UniProtKB/TrEMBL
  ENSSSCG00040012821 UniProtKB/TrEMBL
  ENSSSCG00045019024 UniProtKB/TrEMBL
  ENSSSCG00050056916 UniProtKB/TrEMBL
  ENSSSCG00055024447 UniProtKB/TrEMBL
  ENSSSCG00060007742 UniProtKB/TrEMBL
  ENSSSCG00065024445 UniProtKB/TrEMBL
  ENSSSCG00070009576 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000015009 ENTREZGENE
  ENSSSCT00000015009.5 UniProtKB/TrEMBL
  ENSSSCT00015065687.1 UniProtKB/TrEMBL
  ENSSSCT00025089828.1 UniProtKB/TrEMBL
  ENSSSCT00030010985.1 UniProtKB/TrEMBL
  ENSSSCT00035064172.1 UniProtKB/TrEMBL
  ENSSSCT00040016960.1 UniProtKB/TrEMBL
  ENSSSCT00045032342.1 UniProtKB/TrEMBL
  ENSSSCT00050077596.1 UniProtKB/TrEMBL
  ENSSSCT00055048126.1 UniProtKB/TrEMBL
  ENSSSCT00060009869.1 UniProtKB/TrEMBL
  ENSSSCT00065032645.1 UniProtKB/TrEMBL
  ENSSSCT00070018560.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/TrEMBL
InterPro bZIP UniProtKB/TrEMBL
  bZIP_sf UniProtKB/TrEMBL
  JNK UniProtKB/TrEMBL
  Leuzip_Jun UniProtKB/TrEMBL
  TF_DNA-bd_sf UniProtKB/TrEMBL
KEGG Report ssc:100523358 UniProtKB/TrEMBL
NCBI Gene JUNB ENTREZGENE
PANTHER JUN TRANSCRIPTION FACTOR-RELATED UniProtKB/TrEMBL
  PTHR11462:SF37 UniProtKB/TrEMBL
Pfam bZIP_1 UniProtKB/TrEMBL
  Jun UniProtKB/TrEMBL
PRINTS LEUZIPPRJUN UniProtKB/TrEMBL
PROSITE BZIP UniProtKB/TrEMBL
  BZIP_BASIC UniProtKB/TrEMBL
SMART BRLZ UniProtKB/TrEMBL
Superfamily-SCOP SSF47454 UniProtKB/TrEMBL
  SSF57959 UniProtKB/TrEMBL
UniProt A0A4X1TJP7 ENTREZGENE, UniProtKB/TrEMBL
  I3LJU2 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:89295 ENTREZGENE