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ONTOLOGY REPORT - ANNOTATIONS

Term:protein localization to chromatin
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Accession:GO:0071168 term browser browse the term
Definition:Any process in which a protein is transported to, or maintained at, a part of a chromosome that is organized into chromatin.
Synonyms:exact_synonym: protein localisation to chromatin


show annotations for term's descendants           Sort by:
protein localization to chromatin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aplf aprataxin and PNKP like factor involved_in ISO (PMID:21211722) RGD PMID:21211722 NCBI chr 4:120,070,471...120,122,656
Ensembl chr 4:120,070,471...120,122,633 		JBrowse link
G Brd2 bromodomain containing 2 involved_in ISS
ISO		 GO_REF:0000024
(MGI:6106706|PMID:28262505)
(PMID:28262505)		 UniProt
RGD		 PMID:28262505 GO_REF:0000024 MGI:6106706 NCBI chr20:4,727,078...4,735,389
Ensembl chr20:4,728,151...4,735,388 		JBrowse link
G Brd3 bromodomain containing 3 involved_in ISO (PMID:29567837) RGD PMID:29567837 NCBI chr 3:10,773,163...10,829,675
Ensembl chr 3:10,775,272...10,829,577 		JBrowse link
G Carm1 coactivator-associated arginine methyltransferase 1 acts_upstream_of_or_within ISO (PMID:15616592) RGD PMID:15616592 NCBI chr 8:20,097,262...20,141,950
Ensembl chr 8:20,097,254...20,147,689 		JBrowse link
G Chmp7 charged multivesicular body protein 7 involved_in ISO (PMID:28242692) RGD PMID:28242692 NCBI chr15:44,790,983...44,806,216
Ensembl chr15:44,790,996...44,806,216 		JBrowse link
G Daxx death-domain associated protein involved_in ISO UniProtKB:Q60953 (MGI:5882889|PMID:17081986) RGD PMID:17081986 MGI:5882889 NCBI chr20:4,970,090...4,976,145
Ensembl chr20:4,970,092...4,975,843 		JBrowse link
G Esco2 establishment of sister chromatid cohesion N-acetyltransferase 2 acts_upstream_of_or_within ISO MGI:5308063 (PMID:22101327) RGD PMID:22101327 NCBI chr15:40,034,566...40,052,295
Ensembl chr15:40,034,568...40,055,306 		JBrowse link
G Esr1 estrogen receptor 1 involved_in ISO
IEA		 (PMID:20388878)
GO_REF:0000107		 RGD
Ensembl		 PMID:20388878 GO_REF:0000107 NCBI chr 1:41,106,335...41,499,104
Ensembl chr 1:41,210,475...41,495,002 		JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit acts_upstream_of_or_within ISO MGI:3805309 (PMID:18311137) RGD PMID:18311137 NCBI chr 4:76,624,399...76,687,362
Ensembl chr 4:76,624,399...76,687,362 		JBrowse link
G Fam47e family with sequence similarity 47, member E involved_in ISO (PMID:33376131) RGD PMID:33376131 NCBI chr14:15,485,537...15,521,599
Ensembl chr14:15,485,127...15,521,775 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 involved_in ISO
IEA		 (PMID:20363964)
GO_REF:0000107		 RGD
Ensembl		 PMID:20363964 GO_REF:0000107 NCBI chr 2:219,666,549...219,779,815
Ensembl chr 2:219,666,592...219,779,794 		JBrowse link
G Lemd2 LEM domain nuclear envelope protein 2 involved_in ISO (PMID:28242692) RGD PMID:28242692 NCBI chr20:5,282,397...5,296,621
Ensembl chr20:5,282,397...5,296,626 		JBrowse link
G Mcm8 minichromosome maintenance 8 homologous recombination repair factor involved_in ISO (PMID:23401855) RGD PMID:23401855 NCBI chr 3:120,086,741...120,117,008
Ensembl chr 3:120,086,763...120,117,008 		JBrowse link
G Mcm9 minichromosome maintenance 9 homologous recombination repair factor involved_in ISO
IEA		 (PMID:23401855), (PMID:26300262)
GO_REF:0000107		 RGD
Ensembl		 PMID:23401855 PMID:26300262 GO_REF:0000107 NCBI chr20:32,818,219...32,929,577
Ensembl chr20:32,844,951...32,929,600 		JBrowse link
G Mms22l MMS22-like, DNA repair protein involved_in ISO (PMID:27797818) RGD PMID:27797818 NCBI chr 5:38,197,707...38,313,745
Ensembl chr 5:38,197,779...38,313,745 		JBrowse link
G Mrnip MRN complex interacting protein involved_in ISO (PMID:27568553) RGD PMID:27568553 NCBI chr10:34,501,359...34,525,474
Ensembl chr10:34,501,384...34,525,469 		JBrowse link
G Msh2 mutS homolog 2 involved_in ISO
IEA		 (PMID:26300262)
GO_REF:0000107		 RGD
Ensembl		 PMID:26300262 GO_REF:0000107 NCBI chr 6:6,813,793...6,872,960
Ensembl chr 6:6,813,795...6,872,938 		JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 involved_in ISO (PMID:34874266) RGD PMID:34874266 NCBI chr13:92,307,593...92,339,406
Ensembl chr13:92,307,586...92,339,404 		JBrowse link
G Plk1 polo-like kinase 1 involved_in IEA
ISO
ISS		 GO_REF:0000107
(PMID:21111234)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:21111234 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:176,716,420...176,726,400
Ensembl chr 1:176,716,420...176,726,400 		JBrowse link
G Rad21 RAD21 cohesin complex component involved_in ISO (PMID:21111234) RGD PMID:21111234 NCBI chr 7:83,287,867...83,314,810
Ensembl chr 7:83,287,870...83,314,817 		JBrowse link
G Tonsl tonsoku-like, DNA repair protein involved_in ISO (PMID:27338793) RGD PMID:27338793 NCBI chr 7:108,345,704...108,360,792
Ensembl chr 7:108,346,047...108,360,750 		JBrowse link
G Wapl WAPL cohesin release factor involved_in ISO (PMID:21111234) RGD PMID:21111234 NCBI chr16:10,005,520...10,075,270
Ensembl chr16:10,004,941...10,073,510 		JBrowse link
G Zmynd8 zinc finger, MYND-type containing 8 involved_in ISO (PMID:25593309) RGD PMID:25593309 NCBI chr 3:154,528,917...154,629,532
Ensembl chr 3:154,529,043...154,628,463 		JBrowse link
establishment of protein localization to chromatin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctcfl1 CCCTC-binding factor like 1 involved_in ISO (PMID:18765639) RGD PMID:18765639 NCBI chr 3:161,868,306...161,890,949
Ensembl chr 3:161,868,306...161,890,949 		JBrowse link
G H1f5 H1.5 linker histone, cluster member involved_in ISO (PMID:22956909) RGD PMID:22956909 NCBI chr17:42,726,132...42,727,162
Ensembl chr17:42,726,127...42,769,160 		JBrowse link
G Lrwd1 leucine-rich repeats and WD repeat domain containing 1 involved_in ISO
IBA		 (PMID:20932478)
GO_REF:0000033		 RGD
GO_Central		 PMID:20932478 GO_REF:0000033 NCBI chr12:20,530,035...20,543,078
Ensembl chr12:20,530,012...20,549,536 		JBrowse link
G Macroh2a1 macroH2A.1 histone involved_in ISO (PMID:19734898) RGD PMID:19734898 NCBI chr17:8,479,331...8,542,071
Ensembl chr17:8,479,372...8,542,072 		JBrowse link
G Macroh2a2 macroH2A.2 histone involved_in ISO (PMID:19734898) RGD PMID:19734898 NCBI chr20:29,678,194...29,727,867
Ensembl chr20:29,678,222...29,727,891 		JBrowse link
G Mir208b microRNA 208b acts_upstream_of_or_within ISO (PMID:24137001) RGD PMID:24137001 NCBI chr15:28,451,638...28,451,749
Ensembl chr15:28,451,638...28,451,749 		JBrowse link
G Nipbl NIPBL, cohesin loading factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:57,399,443...57,586,770
Ensembl chr 2:57,399,445...57,565,899 		JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 involved_in ISO (PMID:23637611) RGD PMID:23637611 NCBI chr 1:95,902,014...95,915,247
Ensembl chr 1:95,901,701...95,915,342 		JBrowse link
G Wbp2 WW domain binding protein 2 involved_in IEA
ISO		 GO_REF:0000107
(PMID:23233354)		 Ensembl
RGD		 PMID:23233354 GO_REF:0000107 NCBI chr10:101,312,476...101,320,775
Ensembl chr10:101,312,446...101,320,736 		JBrowse link
mitotic cohesin loading term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nipbl NIPBL, cohesin loading factor involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:57,399,443...57,586,770
Ensembl chr 2:57,399,445...57,565,899 		JBrowse link
negative regulation of protein localization to chromatin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk9 cyclin-dependent kinase 9 involved_in ISO
IEA		 (PMID:14701750)
GO_REF:0000107		 RGD
Ensembl		 PMID:14701750 GO_REF:0000107 NCBI chr 3:15,996,467...16,001,315
Ensembl chr 3:15,996,468...16,002,410 		JBrowse link
G Pias4 protein inhibitor of activated STAT, 4 involved_in ISO (PMID:35013556) RGD PMID:35013556 NCBI chr 7:8,546,312...8,559,838
Ensembl chr 7:8,546,312...8,559,808 		JBrowse link
G Rnf4 ring finger protein 4 involved_in IEA
ISO		 GO_REF:0000107
(PMID:35013556)		 Ensembl
RGD		 PMID:35013556 GO_REF:0000107 NCBI chr14:76,401,292...76,423,270
Ensembl chr14:76,401,299...76,422,566 		JBrowse link
G Sirt6 sirtuin 6 involved_in ISO (PMID:27912097) RGD PMID:27912097 NCBI chr 7:8,082,312...8,087,776
Ensembl chr 7:8,082,364...8,098,914 		JBrowse link
G Spi1 Spi-1 proto-oncogene involved_in ISO (MGI:6381024|PMID:30911105) RGD PMID:30911105 MGI:6381024 NCBI chr 3:77,059,744...77,093,730
Ensembl chr 3:77,073,012...77,092,393 		JBrowse link
G Vcp valosin-containing protein involved_in ISO (PMID:35013556) RGD PMID:35013556 NCBI chr 5:57,210,167...57,229,571
Ensembl chr 5:57,210,168...57,229,571 		JBrowse link
positive regulation of protein localization to chromatin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk9 cyclin-dependent kinase 9 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:29335245)		 UniProt
Ensembl
RGD		 PMID:29335245 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:15,996,467...16,001,315
Ensembl chr 3:15,996,468...16,002,410 		JBrowse link
G Sirt6 sirtuin 6 involved_in ISO (MGI:6357632|PMID:31399344), (PMID:31399344) RGD PMID:31399344 MGI:6357632 NCBI chr 7:8,082,312...8,087,776
Ensembl chr 7:8,082,364...8,098,914 		JBrowse link
G Vrk1 VRK serine/threonine kinase 1 involved_in ISO (PMID:33076429) RGD PMID:33076429 NCBI chr 6:124,914,770...124,981,508
Ensembl chr 6:124,914,855...124,981,436 		JBrowse link
protein localization to heterochromatin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pphln1 periphilin 1 involved_in ISO
IBA		 (PMID:28581500)
GO_REF:0000033		 RGD
GO_Central		 PMID:28581500 GO_REF:0000033 NCBI chr 7:124,538,594...124,629,985
Ensembl chr 7:124,538,627...124,629,985 		JBrowse link
G Tasor transcription activation suppressor involved_in ISO
IBA		 (PMID:28581500)
GO_REF:0000033		 RGD
GO_Central		 PMID:28581500 GO_REF:0000033 NCBI chr16:2,606,807...2,669,902
Ensembl chr16:2,603,936...2,667,292 		JBrowse link
protein localization to pericentric heterochromatin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Jarid2 jumonji and AT-rich interaction domain containing 2 acts_upstream_of_or_within ISO MGI:5888989 (PMID:27892467) RGD PMID:27892467 NCBI chr17:19,777,487...19,957,696
Ensembl chr17:19,777,266...19,955,690 		JBrowse link
regulation of protein localization to chromatin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Setd2 SET domain containing 2, histone lysine methyltransferase involved_in ISO (PMID:24843002) RGD PMID:24843002 NCBI chr 8:110,511,808...110,597,475
Ensembl chr 8:110,511,772...110,597,489 		JBrowse link
G Vcp valosin-containing protein involved_in ISS
ISO		 GO_REF:0000024
(PMID:32152270)		 UniProt
RGD		 PMID:32152270 GO_REF:0000024 NCBI chr 5:57,210,167...57,229,571
Ensembl chr 5:57,210,168...57,229,571 		JBrowse link
G Vcpip1 valosin containing protein interacting protein 1 involved_in ISO
ISS		 (PMID:32649882)
GO_REF:0000024		 RGD
UniProt		 PMID:32649882 GO_REF:0000024 NCBI chr 5:9,534,247...9,560,889
Ensembl chr 5:9,534,129...9,562,040 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19692
    localization 5613
      macromolecule localization 3167
        cellular macromolecule localization 2679
          protein localization 2670
            protein localization to organelle 1043
              protein localization to chromosome 118
                protein localization to chromatin 44
                  cohesin loading + 1
                  establishment of protein localization to chromatin + 9
                  negative regulation of protein localization to chromatin + 6
                  positive regulation of protein localization to chromatin + 3
                  protein localization to CENP-A containing chromatin 0
                  protein localization to euchromatin + 0
                  protein localization to heterochromatin + 3
                  regulation of protein localization to chromatin + 9
paths to the root