Fam47e (family with sequence similarity 47, member E)

Gene: Fam47e (family with sequence similarity 47, member E) Rattus norvegicus

Analyze

Symbol:

Fam47e

Name:

family with sequence similarity 47, member E

RGD ID:

1585459

Description:

Predicted to enable enzyme activator activity. Predicted to be involved in protein localization to chromatin and transcription initiation-coupled chromatin remodeling. Predicted to be located in cytoplasm and nucleus. Predicted to be part of chromatin. Orthologous to human FAM47E (family with sequence similarity 47 member E); INTERACTS WITH Cuprizon; 17beta-estradiol (ortholog); 4-hydroxyphenyl retinamide (ortholog).

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

Fam47e-ps1; family with sequence similarity 47, member E, pseudogene 1; hypothetical protein LOC686140; LOC686140

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	15,769,441 - 15,805,911 (-)	NCBI		GRCr8
mRatBN7.2	14	15,485,537 - 15,521,599 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	15,485,127 - 15,521,775 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	14	16,991,496 - 17,027,563 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	14	16,905,051 - 16,943,299 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	17,047,030 - 17,082,845 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	14	14,880,396 - 14,916,360 (-)	NCBI		Celera
Cytogenetic Map	14	p22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

progressive myoclonus epilepsy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

4-hydroxyphenyl retinamide (ISO)

5-bromo-2'-deoxyuridine (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

Cuprizon (EXP)

epoxiconazole (ISO)

inulin (ISO)

leflunomide (ISO)

methapyrilene (ISO)

N-nitrosodiethylamine (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

picene (ISO)

pioglitazone (ISO)

pirinixic acid (ISO)

silicon dioxide (ISO)

sunitinib (ISO)

tetrachloromethane (ISO)

Triptolide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

protein localization to chromatin (ISO)

transcription initiation-coupled chromatin remodeling (ISO)

Cellular Component

chromatin (ISO)

cytoplasm (ISO)

nucleus (ISO)

Molecular Function

enzyme activator activity (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:25231882	PMID:33376131

Genomics

Comparative Map Data

Fam47e
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	15,769,441 - 15,805,911 (-)	NCBI		GRCr8
mRatBN7.2	14	15,485,537 - 15,521,599 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	15,485,127 - 15,521,775 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	14	16,991,496 - 17,027,563 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	14	16,905,051 - 16,943,299 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	17,047,030 - 17,082,845 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	14	14,880,396 - 14,916,360 (-)	NCBI		Celera
Cytogenetic Map	14	p22	NCBI

FAM47E
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	76,214,040 - 76,283,783 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	76,214,040 - 76,283,783 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	77,135,193 - 77,204,936 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	77,391,903 - 77,423,960 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	4	74,472,978 - 74,505,062 (+)	NCBI		Celera
Cytogenetic Map	4	q21.1	NCBI
HuRef	4	72,887,211 - 72,956,976 (+)	NCBI		HuRef
CHM1_1	4	77,111,548 - 77,181,407 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	79,554,708 - 79,624,480 (+)	NCBI		T2T-CHM13v2.0

Fam47e
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	92,702,823 - 92,739,144 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	92,702,928 - 92,739,138 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	92,554,960 - 92,591,285 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	92,555,069 - 92,591,279 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	92,984,114 - 93,020,310 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	93,646,744 - 93,665,940 (+)	NCBI		MGSCv36	mm8
Celera	5	90,696,596 - 90,732,771 (+)	NCBI		Celera
Cytogenetic Map	5	E2	NCBI
cM Map	5	47.09	NCBI

FAM47E
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	53,781,131 - 53,817,012 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	53,973,748 - 54,010,468 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	47,916,493 - 47,949,816 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	53,756,261 - 53,788,614 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	53,756,619 - 53,826,800 (-)	Ensembl	panpan1.1		panPan2

FAM47E
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	32	904,947 - 930,985 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	32	40,949,109 - 40,979,040 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	32	929,644 - 950,458 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	32	926,647 - 948,318 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	32	880,804 - 902,473 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	32	39,273,423 - 39,295,054 (-)	NCBI		UU_Cfam_GSD_1.0

LOC101969524
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	11,219,483 - 11,243,495 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936676	263,704 - 287,761 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936676	263,974 - 287,742 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FAM47E
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	71,940,299 - 71,961,432 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	71,940,297 - 71,965,843 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	76,135,270 - 76,159,999 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FAM47E
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	24,750,287 - 24,782,574 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666037	3,098,932 - 3,130,997 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in Fam47e
444 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	58
Count of miRNA genes:	52
Interacting mature miRNAs:	55
Transcripts:	ENSRNOT00000047214
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2300159	Bmd61	Bone mineral density QTL 61	5.3	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	14	1	26541967	Rat
2300183	Bmd60	Bone mineral density QTL 60	5.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	14	1	26541967	Rat
619619	Rf4	Renal disease susceptibility QTL 4	4.1	0.002	urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	14	1	32754612	Rat
634352	Apr6	Acute phase response QTL 6	3.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	14	1	41131407	Rat
70204	Niddm20	Non-insulin dependent diabetes mellitus QTL 20	5.1	0.000008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	1217606	16960180	Rat
2293089	Iddm31	Insulin dependent diabetes mellitus QTL 31	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	3813074	18274691	Rat
2293089	Iddm31	Insulin dependent diabetes mellitus QTL 31	4.7		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	14	3813074	18274691	Rat
1300114	Srn2	Serum renin concentration QTL 2	3.27		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	14	3813074	21217635	Rat
70195	Mcs8	Mammary carcinoma susceptibility QTL 8	4.28		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	14	3813074	24531477	Rat
1331740	Bw26	Body weight QTL 26	3.028		body mass (VT:0001259)	body weight (CMO:0000012)	14	3813074	30767156	Rat
1581500	Renag1	Renal agenesis QTL 1			kidney development trait (VT:0000527)	percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)	14	8170668	68298175	Rat
1358296	Ael3	Aortic elastin QTL 3	3.7	0.00051	aorta elastin amount (VT:0003905)	aortic elastin	14	8267090	53267090	Rat
2302045	Pia39	Pristane induced arthritis QTL 39	4.9	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G2a level (CMO:0002116)	14	8267090	53267090	Rat
731183	Pia20	Pristane induced arthritis QTL 20	3.55		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	9088978	39057237	Rat
2302277	Gluco38	Glucose level QTL 38	5.8		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11030622	28035204	Rat
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11030622	95876975	Rat
631212	Bw5	Body weight QTL5	5.43		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	14	11030812	30320092	Rat
1300140	Srn3	Serum renin concentration QTL 3	3.19		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	14	14875168	30883947	Rat

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_006221696	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599433	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604768	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092676	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092678	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC103535	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474060	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000117881 ⟹ ENSRNOP00000085925

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	15,485,127 - 15,521,775 (-)	Ensembl

RefSeq Acc Id:

XM_008770096 ⟹ XP_008768318

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	15,769,441 - 15,805,893 (-)	NCBI
mRatBN7.2	14	15,485,540 - 15,521,578 (-)	NCBI
Rnor_6.0	14	16,991,496 - 17,027,562 (-)	NCBI

Sequence:

show sequence

AATAGAATGTCAGCTCAATCCGGGTAGTGTTGGGGTACTGCTAGACGCCTCACTTGCTGCGGGC
CAAATTGGGCAGGTCTGGGCAGCTCAGGGCTGTGCTGATCTCCTAGCAACTCGGGAAGCCGTGG
GGGAACTTGCAACCCAAGTCCCGGCAGTGGTCATGCAGCGGGCAGTGCCATGGCGGAGCGTGGG
CAGCGACTCCAGCCTAAAACTCTGGCTCCGAAACTGATGAGGGAGCGCCGGAACTGCGGGTGGT
ACCTCGAGAACCTGCCTTCCAAACGTCTCCCGAAGAGTAGCAGGCTGACATTGAATAGCCGGCA
TTGGGTGTTTGTGAAAGAGGGGCTGGATGACTTCAGGAAAGACTGCCCCCCACACCAGGGCCCC
AAGGATGCCTTTCTACCTCTTATTCATCACGGAGCCCCCAATGCTACCCCCAAGGGGAGGCAGA
GCAGACTGCCCACGGGGACAACGTTGTCTAAGCTTTCGAAAGCTGGGAAGACATTCTTGGAGGA
AGTGGAAGCTAAGGACGACGCACTGCACCCCCTGGCTCTCTACCCACAAATTAAAGAAGCTCTG
CCTGCTGAGCTCTTATTGAAGGTGCTTGAGGTACTCGACCCAGAGAGGAAGCTTGAGGATGCAT
GGGCTTGTTGCCGGGATACCAGGGAGTTAATGAAGGAACCCACAAAGCTTGTAGAAGAACGCTC
TTCCCAAGTATGCCCGCCCAAGAAGATGCTGATGTCACGTTCAGGCCAATGGCTTTGTGAAGAA
AAGCCAAGCAAAGTGGATTCACTCTATAAAGACAGTCTCCTCCACGATGACATACGCAGAGGAG
TCAGCAACTTCTGCCACTGGGCTGCGGATCTCGGAAGCTCGACCATCGAGGAAGAGTTCATCCT
GCAACAGTTTGACATTGACTATCAGACCAGATGCAGCTGTGATGAGCTTCACAGGCTGAGGCTA
ACCCAGGACAAACCCTGCATCAATGGACCACCTCCCCATCGAGAACGCTGTGGGCACGGGATCA
AACCTCGGTCCTCTGGAAGAGCAAATCCTCAGCAGCCGAAGCGGGTGAGGATGAGGTACGGAGC
CTGGTATCTGAACACCAAGTTGTGGAAGAGGCAAAGAGCCGACGAACCTCTGGTCGACCCCAGG
GTCTCACCCAAAGCTCAGGATTCGAATTTTGAAAAACAGCTTCAGGAACAGGAGGAACTGCTTG
CAGACCTATGTGGAACAGCCGCCTTTAAGGACTTCGTTCTAAGCAGGGGCTACAGGATGCCCAG
GTTCCTTGAGAAGATATATGCGGAGGAGGAGAAAAGTAAATCTGAAAATATTAGGACTCCTAAA
AAGCTCACGGAAACAGAGAGGAATCCTGGGAGAAGATGAGTCAGCTTTTATTGACAGCATATTT
GAATACTGCTCCATTATTTTAATTATTAAGTAGAATATAGCAAGTGCTATCTGTGGAAACTTCA
ACCCGGTCTTTCTAAATGCTTTAGCTTATCATTTTATATATATATATA

hide sequence

RefSeq Acc Id:

XM_017599433 ⟹ XP_017454922

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	15,769,441 - 15,805,903 (-)	NCBI
mRatBN7.2	14	15,485,539 - 15,521,585 (-)	NCBI
Rnor_6.0	14	16,991,496 - 17,027,563 (-)	NCBI

Sequence:

show sequence

CAATAGAATGTCAGCTCAATCCGGGTAGTGTTGGGGTACTGCTAGACGCCTCACTTGCTGCGGG
CCAAATTGGGCAGGTCTGGGCAGCTCAGGGCTGTGCTGATCTCCTAGCAACTCGGGAAGCCGTG
GGGGAACTTGCAACCCAAGTCCCGGCAGTGGTCATGCAGCGGGCAGTGCCATGGCGGAGCGTGG
GCAGCGACTCCAGCCTAAAACTCTGGCTCCGAAACTGATGAGGGAGCGCCGGAACTGCGGGTGG
TACCTCGAGAACCTGCCTTCCAAACGTCTCCCGAAGAGTAGCAGGCTGACATTGAATAGCCGGC
ATTGGGTGTTTGTGAAAGAGGGGCTGGATGACTTCAGGAAAGACTGCCCCCCACACCAGGGCCC
CAAGGATGCCTTTCTACCTCTTATTCATCACGGAGCCCCCAATGCTACCCCCAAGGGGAGGCAG
AGCAGACTGCCCACGGGGACAACGTTGTCTAAGCTTTCGAAAGCTGGGAAGACATTCTTGGAGG
AAGTGGAAGCTAAGGACGACGCACTGCACCCCCTGGCTCTCTACCCACAAATTAAAGAAGCTCT
GCCTGCTGAGCTCTTATTGAAGGTGCTTGAGGTACTCGACCCAGAGAGGAAGCTTGAGGATGCA
TGGGCTTGTTGCCGGGATACCAGGGAGTTAATGAAGGAACCCACAAAGCTTGTAGAAGAACGCT
CTTCCCAAGTATGCCCGCCCAAGAAGATGCTGATGTCACGTTCAGGCCAATGGCTTTGTGAAGA
AAAGCCAAGCAAAGTGGATTCACTCTATAAAGACAGTCTCCTCCACGATGACATACGCAGAGGA
GTCAGCAACTTCTGCCACTGGGCTGCGGATCTCGACAAACCCTGCATCAATGGACCACCTCCCC
ATCGAGAACGCTGTGGGCACGGGATCAAACCTCGGTCCTCTGGAAGAGCAAATCCTCAGCAGCC
GAAGCGGGTGAGGATGAGGTACGGAGCCTGGTATCTGAACACCAAGTTGTGGAAGAGGCAAAGA
GCCGACGAACCTCTGGTCGACCCCAGGGTCTCACCCAAAGCTCAGGATTCGAATTTTGAAAAAC
AGCTTCAGGAACAGGAGGAACTGCTTGCAGACCTATGTGGAACAGCCGCCTTTAAGGACTTCGT
TCTAAGCAGGGGCTACAGGATGCCCAGGTTCCTTGAGAAGATATATGCGGAGGAGGAGAAAAGT
AAATCTGAAAATATTAGGACTCCTAAAAAGCTCACGGAAACAGAGAGGAATCCTGGGAGAAGAT
GAGTCAGCTTTTATTGACAGCATATTTGAATACTGCTCCATTATTTTAATTATTAAGTAGAATA
TAGCAAGTGCTATCTGTGGAAACTTCAACCCGGTCTTTCTAAATGCTTTAGCTTATCATTTTAT
ATATATATATA

hide sequence

RefSeq Acc Id:

XM_039092676 ⟹ XP_038948604

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	15,769,441 - 15,805,902 (-)	NCBI
mRatBN7.2	14	15,485,539 - 15,521,585 (-)	NCBI

RefSeq Acc Id:

XM_039092678 ⟹ XP_038948606

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	15,769,441 - 15,805,911 (-)	NCBI
mRatBN7.2	14	15,485,538 - 15,521,592 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_008768318	(Get FASTA)	NCBI Sequence Viewer
	XP_017454922	(Get FASTA)	NCBI Sequence Viewer
	XP_038948604	(Get FASTA)	NCBI Sequence Viewer
	XP_038948606	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL88642	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000085925.1

RefSeq Acc Id:	XP_008768318 ⟸ XM_008770096
- Peptide Label:	isoform X1
- UniProtKB:	A6KK67 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAERGQRLQPKTLAPKLMRERRNCGWYLENLPSKRLPKSSRLTLNSRHWVFVKEGLDDFRKDCP PHQGPKDAFLPLIHHGAPNATPKGRQSRLPTGTTLSKLSKAGKTFLEEVEAKDDALHPLALYPQ IKEALPAELLLKVLEVLDPERKLEDAWACCRDTRELMKEPTKLVEERSSQVCPPKKMLMSRSGQ WLCEEKPSKVDSLYKDSLLHDDIRRGVSNFCHWAADLGSSTIEEEFILQQFDIDYQTRCSCDEL HRLRLTQDKPCINGPPPHRERCGHGIKPRSSGRANPQQPKRVRMRYGAWYLNTKLWKRQRADEP LVDPRVSPKAQDSNFEKQLQEQEELLADLCGTAAFKDFVLSRGYRMPRFLEKIYAEEEKSKSEN IRTPKKLTETERNPGRR hide sequence

RefSeq Acc Id:

XP_017454922 ⟸ XM_017599433

- Peptide Label:

isoform X2

- Sequence:

show sequence

MAERGQRLQPKTLAPKLMRERRNCGWYLENLPSKRLPKSSRLTLNSRHWVFVKEGLDDFRKDCP
PHQGPKDAFLPLIHHGAPNATPKGRQSRLPTGTTLSKLSKAGKTFLEEVEAKDDALHPLALYPQ
IKEALPAELLLKVLEVLDPERKLEDAWACCRDTRELMKEPTKLVEERSSQVCPPKKMLMSRSGQ
WLCEEKPSKVDSLYKDSLLHDDIRRGVSNFCHWAADLDKPCINGPPPHRERCGHGIKPRSSGRA
NPQQPKRVRMRYGAWYLNTKLWKRQRADEPLVDPRVSPKAQDSNFEKQLQEQEELLADLCGTAA
FKDFVLSRGYRMPRFLEKIYAEEEKSKSENIRTPKKLTETERNPGRR

hide sequence

RefSeq Acc Id:	XP_038948606 ⟸ XM_039092678
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038948604 ⟸ XM_039092676
- Peptide Label:	isoform X3

RefSeq Acc Id:

ENSRNOP00000085925 ⟸ ENSRNOT00000117881

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1585459	AgrOrtholog
BioCyc Gene	G2FUF-16269	BioCyc
Ensembl Genes	ENSRNOG00000062922	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000117881.1	UniProtKB/TrEMBL
InterPro	FAM47	UniProtKB/TrEMBL
KEGG Report	rno:686140	UniProtKB/TrEMBL
NCBI Gene	686140	ENTREZGENE
PANTHER	PROTEIN FAM47E	UniProtKB/TrEMBL
	PTHR46449	UniProtKB/TrEMBL
Pfam	FAM47	UniProtKB/TrEMBL
PhenoGen	Fam47e	PhenoGen
RatGTEx	ENSRNOG00000062922	RatGTEx
UniProt	A0A8I6A2J7_RAT	UniProtKB/TrEMBL
	A6KK67	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-06-02	Fam47e	family with sequence similarity 47, member E	Fam47e	family with sequence similarity 47, member E	Data merged from RGD:149736247	737654	PROVISIONAL
2021-08-09	Fam47e	family with sequence similarity 47, member E			Symbol and Name status set to provisional	45752	PROVISIONAL
2013-03-05	Fam47e	family with sequence similarity 47, member E	Fam47e-ps1	family with sequence similarity 47, member E, pseudogene 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2011-06-08	Fam47e-ps1	family with sequence similarity 47, member E, pseudogene 1	Fam47e	family with sequence similarity 47, member E	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-04-23	Fam47e	family with sequence similarity 47, member E	LOC686140	hypothetical protein LOC686140	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-01-09	LOC686140	hypothetical protein LOC686140	LOC684546	hypothetical protein LOC684546	Data merged from RGD:1589139	1643240	APPROVED
2006-11-19	LOC686140	hypothetical protein LOC686140			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-19	LOC684546	hypothetical protein LOC684546			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar