Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:protein localization to chromatin
go back to main search page
Accession:GO:0071168 term browser browse the term
Definition:Any process in which a protein is transported to, or maintained at, a part of a chromosome that is organized into chromatin.
Synonyms:exact_synonym: protein localisation to chromatin


show annotations for term's descendants           Sort by:
 
protein localization to chromatin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Carm1 coactivator-associated arginine methyltransferase 1 acts_upstream_of_or_within ISO (MGI:3613433|PMID:15616592) RGD PMID:15616592 MGI:3613433 NCBI chr 8:22,577,723...22,622,555
Ensembl chr 8:22,577,715...22,622,560
JBrowse link
G Chmp7 charged multivesicular body protein 7 involved_in ISO (PMID:28242692) RGD PMID:28242692 NCBI chr15:51,385,373...51,400,606
Ensembl chr15:51,385,386...51,400,606
JBrowse link
G Daxx death-domain associated protein involved_in ISO UniProtKB:Q60953 (MGI:5882889|PMID:17081986) RGD PMID:17081986 MGI:5882889 NCBI chr20:5,480,103...5,485,962
Ensembl chr20:5,480,103...5,485,926
JBrowse link
G Esco2 establishment of sister chromatid cohesion N-acetyltransferase 2 acts_upstream_of_or_within ISO MGI:5308063 (MGI:5306174|PMID:22101327) RGD PMID:22101327 MGI:5306174 NCBI chr15:42,500,929...42,519,019
Ensembl chr15:42,500,929...42,518,855
JBrowse link
G Esr1 estrogen receptor 1 involved_in ISO
IEA
(PMID:20388878)
GO_REF:0000107
RGD
Ensembl
PMID:20388878 GO_REF:0000107 NCBI chr 1:41,192,029...41,594,799
Ensembl chr 1:41,192,824...41,594,796
JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit acts_upstream_of_or_within ISO MGI:3805309 (MGI:3788959|PMID:18311137) RGD PMID:18311137 MGI:3788959 NCBI chr 4:77,284,404...77,347,011
Ensembl chr 4:77,284,404...77,347,011
JBrowse link
G Fam47e family with sequence similarity 47, member E involved_in ISO (PMID:33376131) RGD PMID:33376131 NCBI chr14:16,991,496...17,027,563 JBrowse link
G Lemd2 LEM domain nuclear envelope protein 2 involved_in ISO (PMID:28242692) RGD PMID:28242692 NCBI chr20:5,779,742...5,786,213
Ensembl chr20:6,545,083...6,556,350
JBrowse link
G Mcm8 minichromosome maintenance 8 homologous recombination repair factor involved_in ISO (PMID:23401855) RGD PMID:23401855 NCBI chr 3:125,470,499...125,500,795
Ensembl chr 3:125,470,551...125,500,795
JBrowse link
G Mcm9 minichromosome maintenance 9 homologous recombination repair factor involved_in ISO (PMID:23401855), (PMID:26300262) RGD PMID:23401855 PMID:26300262 NCBI chr20:34,818,093...34,930,157
Ensembl chr20:34,846,804...34,929,965
JBrowse link
G Mrnip MRN complex interacting protein involved_in ISO (PMID:27568553) RGD PMID:27568553 NCBI chr10:35,680,687...35,704,685
Ensembl chr10:35,680,658...35,704,776
JBrowse link
G Msh2 mutS homolog 2 involved_in ISO
IEA
(PMID:26300262)
GO_REF:0000107
RGD
Ensembl
PMID:26300262 GO_REF:0000107 NCBI chr 6:11,215,951...11,274,916
Ensembl chr 6:11,215,963...11,274,932
JBrowse link
G Plk1 polo-like kinase 1 involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:21111234)
Ensembl
UniProt
RGD
PMID:21111234 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:192,115,990...192,125,969
Ensembl chr 1:192,115,966...192,125,989
JBrowse link
G Rad21 RAD21 cohesin complex component involved_in ISO (PMID:21111234) RGD PMID:21111234 NCBI chr 7:91,511,755...91,538,673
Ensembl chr 7:91,511,756...91,538,673
JBrowse link
G Wapl WAPL cohesin release factor involved_in ISO (PMID:21111234) RGD PMID:21111234 NCBI chr16:11,029,325...11,108,867
Ensembl chr16:11,032,531...11,106,589
JBrowse link
cohesin loading term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mau2 MAU2 sister chromatid cohesion factor involved_in ISO (PMID:22628566) RGD PMID:22628566 NCBI chr16:21,132,115...21,163,257
Ensembl chr16:21,132,147...21,163,257
JBrowse link
G Nipbl NIPBL, cohesin loading factor involved_in ISO (PMID:22628566)
(MGI:6102971|PMID:29094699)
RGD PMID:22628566 PMID:29094699 MGI:6102971 NCBI chr 2:57,508,830...57,676,197
Ensembl chr 2:57,509,428...57,600,820
JBrowse link
establishment of protein localization to chromatin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H1f5 H1.5 linker histone, cluster member involved_in ISO (PMID:22956909) RGD PMID:22956909 NCBI chr17:44,766,313...44,766,981
Ensembl chr17:44,766,313...44,766,981
JBrowse link
G Lrwd1 leucine-rich repeats and WD repeat domain containing 1 involved_in ISO
IBA
(PMID:20932478)
PMID:21873635
RGD PMID:20932478, PMID:21873635 RGD:13792537 NCBI chr12:23,574,234...23,587,262
Ensembl chr12:23,574,187...23,587,276
JBrowse link
G Macroh2a1 macroH2A.1 histone involved_in ISO (PMID:19734898) RGD PMID:19734898 NCBI chr17:9,282,109...9,344,698
Ensembl chr17:9,282,675...9,344,678
JBrowse link
G Macroh2a2 macroH2A.2 histone involved_in ISO (PMID:19734898) RGD PMID:19734898 NCBI chr20:31,352,924...31,402,483
Ensembl chr20:31,352,960...31,402,483
JBrowse link
G Mir208b microRNA 208b acts_upstream_of_or_within ISO (MGI:5576864|PMID:24137001) RGD PMID:24137001 MGI:5576864 NCBI chr15:33,639,510...33,639,621
Ensembl chr15:33,639,510...33,639,621
JBrowse link
G Nipbl NIPBL, cohesin loading factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:57,508,830...57,676,197
Ensembl chr 2:57,509,428...57,600,820
JBrowse link
G Pih1d1 PIH1 domain containing 1 involved_in ISO (PMID:22368283) RGD PMID:22368283 NCBI chr 1:101,151,240...101,156,806
Ensembl chr 1:101,152,734...101,156,805
JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 involved_in ISO (PMID:23637611) RGD PMID:23637611 NCBI chr 1:101,413,766...101,426,970
Ensembl chr 1:101,413,766...101,426,852
JBrowse link
negative regulation of protein localization to chromatin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spi1 Spi-1 proto-oncogene involved_in IEA
ISO
GO_REF:0000107
(MGI:6381024|PMID:30911105)
Ensembl
RGD
PMID:30911105 GO_REF:0000107 MGI:6381024 NCBI chr 3:79,918,127...79,937,708
Ensembl chr 3:79,918,969...79,938,301
JBrowse link
positive regulation of mitotic cohesin loading term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nipbl NIPBL, cohesin loading factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:57,508,830...57,676,197
Ensembl chr 2:57,509,428...57,600,820
JBrowse link
protein localization to heterochromatin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pphln1 periphilin 1 involved_in IBA
ISO
PMID:21873635
(PMID:28581500)
RGD PMID:28581500, PMID:21873635 RGD:13792537 NCBI chr 7:134,602,109...134,693,807
Ensembl chr 7:134,603,121...134,695,864
JBrowse link
G Tasor transcription activation suppressor involved_in ISO (PMID:28581500) RGD PMID:28581500 NCBI chr16:3,050,506...3,108,168
Ensembl chr16:3,051,449...3,105,531
JBrowse link
regulation of cohesin loading term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdca5 cell division cycle associated 5 involved_in IBA
ISO
PMID:21873635
(PMID:17349791)
RGD PMID:17349791, PMID:21873635 RGD:13792537 NCBI chr 1:221,448,661...221,462,235
Ensembl chr 1:221,448,661...221,462,233
JBrowse link
G Hdac8 histone deacetylase 8 involved_in ISO
ISS
(PMID:22885700)
GO_REF:0000024
RGD
UniProt
PMID:22885700 GO_REF:0000024 NCBI chr  X:72,163,777...72,370,058
Ensembl chr  X:72,163,777...72,370,044
JBrowse link
G Rb1 RB transcriptional corepressor 1 involved_in ISO
IEA
(PMID:20551165)
GO_REF:0000107
RGD
Ensembl
PMID:20551165 GO_REF:0000107 NCBI chr15:55,081,582...55,209,060
Ensembl chr15:55,083,140...55,209,342
JBrowse link
G Wapl WAPL cohesin release factor involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:5551791|MGI:5551807 (MGI:5544860|PMID:23975099)
(PMID:17113138)
RGD PMID:17113138 PMID:23975099, PMID:21873635 MGI:5544860, RGD:13792537 NCBI chr16:11,029,325...11,108,867
Ensembl chr16:11,032,531...11,106,589
JBrowse link
regulation of protein localization to chromatin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Setd2 SET domain containing 2, histone lysine methyltransferase involved_in ISO (PMID:24843002) RGD PMID:24843002 NCBI chr 8:118,802,478...118,888,224
Ensembl chr 8:118,803,075...118,888,224
JBrowse link
G Vcp valosin-containing protein involved_in ISS
ISO
GO_REF:0000024
(PMID:32152270)
UniProt
RGD
PMID:32152270 GO_REF:0000024 NCBI chr 5:58,426,548...58,445,953
Ensembl chr 5:58,426,549...58,445,953
JBrowse link
G Vcpip1 valosin containing protein interacting protein 1 involved_in ISO
ISS
(PMID:32649882)
GO_REF:0000024
RGD
UniProt
PMID:32649882 GO_REF:0000024 NCBI chr 5:9,231,180...9,257,821
Ensembl chr 5:9,230,984...9,257,934
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19599
    localization 6449
      macromolecule localization 3004
        protein localization 2564
          cellular protein localization 1838
            protein localization to organelle 937
              protein localization to chromosome 98
                protein localization to chromatin 33
                  cohesin loading + 6
                  establishment of protein localization to chromatin + 8
                  negative regulation of protein localization to chromatin + 1
                  positive regulation of protein localization to chromatin + 1
                  protein localization to CENP-A containing chromatin 0
                  protein localization to euchromatin + 0
                  protein localization to heterochromatin + 2
                  regulation of protein localization to chromatin + 9
paths to the root