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ONTOLOGY REPORT - ANNOTATIONS

Term:glycogen catabolic process
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Accession:GO:0005980 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues.
Synonyms:exact_synonym: glycogen breakdown;   glycogen catabolism;   glycogen degradation;   glycogenolysis
 xref: MetaCyc:PWY-7662;   Reactome:R-HSA-70221 "Glycogen breakdown (glycogenolysis)"


show annotations for term's descendants           Sort by:
glycogen catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adrb1 adrenoceptor beta 1 IDA RGD PMID:17911346 RGD:5129142 NCBI chr 1:265,777,103...265,780,114
Ensembl chr 1:265,766,079...265,849,237 		JBrowse link
G Agl amylo-alpha-1,6-glucosidase and 4-alpha-glucanotransferase involved_in IMP
ISO
IEA
IBA
IDA 		MGI:4432988|MGI:5661387 (PMID:24613482), (PMID:25092169)
GO_REF:0000002
GO_REF:0000107
GO_REF:0000033 		RGD
InterPro
Ensembl
GO_Central		 PMID:24613482 PMID:25092169 PMID:9281456 PMID:6449198 PMID:11766064 More... GO_REF:0000002 GO_REF:0000033 GO_REF:0000107, RGD:1598779, RGD:1642743, RGD:2304191, RGD:1642741 NCBI chr 2:207,389,949...207,445,959
Ensembl chr 2:207,389,949...207,445,724 		JBrowse link
G G6pc1 glucose-6-phosphatase catalytic subunit 1 acts_upstream_of_or_within ISO MGI:2387343 (PMID:10625614) RGD PMID:10625614 NCBI chr10:86,807,659...86,819,023
Ensembl chr10:86,757,899...86,818,033 		JBrowse link
G Gaa alpha glucosidase acts_upstream_of_or_within
involved_in 		IMP
ISO
IBA
IEA
IDA 		MGI:2148550|MGI:2179961 (PMID:11328962), (PMID:11785984)
MGI:2179955|MGI:2179960 (PMID:10838256)
GO_REF:0000033
GO_REF:0000117
(PMID:29061980), (PMID:9505277) 		RGD
GO_Central
UniProt		 PMID:9505277 PMID:10838256 PMID:11328962 PMID:11785984 PMID:29061980 More... GO_REF:0000033 GO_REF:0000117, RGD:1599504, RGD:1599506 NCBI chr10:105,028,106...105,045,365
Ensembl chr10:105,028,307...105,045,366 		JBrowse link
G Pfkm phosphofructokinase, muscle acts_upstream_of_or_within ISO MGI:4356541 (PMID:19696889) RGD PMID:19696889 NCBI chr 7:131,100,684...131,138,250
Ensembl chr 7:131,100,753...131,138,248 		JBrowse link
G Pgm1 phosphoglucomutase 1 acts_upstream_of_or_within ISO (PMID:28882528) RGD PMID:28882528 NCBI chr 5:119,710,734...119,770,159
Ensembl chr 5:119,710,737...119,770,159 		JBrowse link
G Pgm2 phosphoglucomutase 2 involved_in IEA
ISO 		GO_REF:0000107
(PMID:927504) 		Ensembl
RGD		 PMID:927504 GO_REF:0000107 NCBI chr14:44,519,906...44,553,420
Ensembl chr14:44,519,906...44,553,770 		JBrowse link
G Phka1 phosphorylase kinase regulatory subunit alpha 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:38548794) 		Ensembl
RGD		 PMID:38548794 GO_REF:0000107 NCBI chr  X:71,639,701...71,778,465
Ensembl chr  X:71,641,246...71,778,320 		JBrowse link
G Phkb phosphorylase kinase regulatory subunit beta involved_in IEA
ISO 		GO_REF:0000107
(PMID:38548794) 		Ensembl
RGD		 PMID:38548794 GO_REF:0000107 NCBI chr19:37,179,937...37,383,979
Ensembl chr19:37,186,042...37,383,877 		JBrowse link
G Phkg1 phosphorylase kinase catalytic subunit gamma 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:38548794) 		Ensembl
RGD		 PMID:38548794 GO_REF:0000107 NCBI chr12:32,474,926...32,490,657
Ensembl chr12:32,474,921...32,490,653 		JBrowse link
G Phkg2 phosphorylase kinase catalytic subunit gamma 2 involved_in IEA
ISO 		GO_REF:0000107
MGI:5629316 (PMID:34083142) 		Ensembl
RGD		 PMID:34083142 GO_REF:0000107 NCBI chr 1:191,614,738...191,627,615
Ensembl chr 1:191,614,865...191,627,616 		JBrowse link
G Pygb glycogen phosphorylase B involved_in IDA
ISO
IEA
IBA 		(PMID:32446205)
GO_REF:0000107
GO_REF:0000033
GO_REF:0000117 		RGD
Ensembl
GO_Central
UniProt		 PMID:32446205 PMID:16226229 PMID:11071367 PMID:10634496 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117, RGD:1642804, RGD:2304126, RGD:1642809 NCBI chr 3:160,072,141...160,118,930
Ensembl chr 3:160,072,115...160,123,961 		JBrowse link
G Pygl glycogen phosphorylase L involved_in IDA
ISO
IEA
IBA 		MGI:4362669 (PMID:31701076), (PMID:36077341)
GO_REF:0000117
GO_REF:0000033 		RGD
UniProt
GO_Central		 PMID:31701076 PMID:36077341 PMID:15152027 PMID:6449198 PMID:114169 GO_REF:0000033 GO_REF:0000117, RGD:1642805, RGD:1642743, RGD:2304128 NCBI chr 6:94,433,558...94,476,219
Ensembl chr 6:94,426,346...94,476,269 		JBrowse link
G Pygm glycogen phosphorylase, muscle associated acts_upstream_of_or_within
involved_in 		IDA
ISO
IEA
IBA 		(PMID:15282316)
MGI:5696972 (PMID:31511858)
(PMID:17689562)
GO_REF:0000107
GO_REF:0000033
GO_REF:0000117
(PMID:1150650), (PMID:8316268) 		RGD
Ensembl
GO_Central
UniProt		 PMID:1150650 PMID:8316268 PMID:15282316 PMID:17689562 PMID:31511858 More... GO_REF:0000033 GO_REF:0000107 GO_REF:0000117, RGD:1599986, RGD:1642743, RGD:1599897, RGD:2304126, RGD:1642811 NCBI chr 1:213,119,805...213,134,622
Ensembl chr 1:213,119,791...213,134,612 		JBrowse link
G Stbd1 starch binding domain 1 involved_in ISO
IEA
ISS 		(PMID:20810658)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
GO_Central		 PMID:20810658 GO_REF:0000024 GO_REF:0000107 NCBI chr14:15,754,769...15,758,174
Ensembl chr14:15,754,644...15,761,659 		JBrowse link
glycophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg12 autophagy related 12 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:41,638,841...41,649,311
Ensembl chr18:41,635,835...41,649,261 		JBrowse link
G Atg2a autophagy related 2A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:212,971,822...212,991,505
Ensembl chr 1:212,971,844...212,991,528 		JBrowse link
G Atg2b autophagy related 2B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:130,286,979...130,357,109
Ensembl chr 6:130,286,986...130,357,109 		JBrowse link
G Atg3 autophagy related 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:69,130,948...69,159,280
Ensembl chr11:69,121,952...69,159,280 		JBrowse link
G Gaa alpha glucosidase acts_upstream_of_or_within
involved_in 		ISO (PMID:5264799)
MGI:2148550 (PMID:12739885) 		RGD PMID:5264799 PMID:12739885 NCBI chr10:105,028,106...105,045,365
Ensembl chr10:105,028,307...105,045,366 		JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 acts_upstream_of_or_within
involved_in 		ISO UniProtKB:O95210 (PMID:21893048)
(PMID:20810658) 		RGD PMID:20810658 PMID:21893048 NCBI chr 4:164,666,332...164,675,474
Ensembl chr 4:164,666,246...164,674,578 		JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:17,948,522...18,012,434
Ensembl chr 5:17,948,522...18,012,434 		JBrowse link
G Stbd1 starch binding domain 1 involved_in ISO
ISS
IEA 		(PMID:20810658)
GO_REF:0000024
GO_REF:0000107
GO_REF:0000117 		RGD
GO_Central
Ensembl
UniProt		 PMID:20810658 GO_REF:0000024 GO_REF:0000107 GO_REF:0000117 NCBI chr14:15,754,769...15,758,174
Ensembl chr14:15,754,644...15,761,659 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:17,448,195...17,454,117
Ensembl chr  X:17,448,207...17,454,117 		JBrowse link
G Wdr45b WD repeat domain 45B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:107,097,655...107,127,839
Ensembl chr10:107,097,755...107,127,831 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:95,042,451...95,079,679
Ensembl chr10:95,042,441...95,079,293 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:17,024,876...17,053,306
Ensembl chr12:17,024,878...17,071,406 		JBrowse link
negative regulation of glycogen catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adra1b adrenoceptor alpha 1B acts_upstream_of_or_within ISO MGI:2148638 (PMID:14581480) RGD PMID:14581480 NCBI chr10:28,756,461...28,874,831
Ensembl chr10:28,756,461...28,814,347 		JBrowse link
G Ins2 insulin 2 involved_in ISO (PMID:381941) RGD PMID:381941 NCBI chr 1:207,272,738...207,421,998
Ensembl chr 1:207,272,742...207,273,805 		JBrowse link
G Ppp1r3b protein phosphatase 1, regulatory subunit 3B involved_in ISO
IEA 		(PMID:22225877)
GO_REF:0000107 		RGD
Ensembl		 PMID:22225877 GO_REF:0000107 NCBI chr16:63,533,318...63,545,683
Ensembl chr16:63,532,842...63,549,997 		JBrowse link
positive regulation of glycogen catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adcy10 adenylate cyclase 10 IMP RGD PMID:22998876 RGD:329412477 NCBI chr13:80,280,595...80,366,939
Ensembl chr13:80,284,295...80,366,926 		JBrowse link
G Adra1b adrenoceptor alpha 1B acts_upstream_of_or_within ISO MGI:2148638 (PMID:14581480) RGD PMID:14581480 NCBI chr10:28,756,461...28,874,831
Ensembl chr10:28,756,461...28,814,347 		JBrowse link
G Avpr1a arginine vasopressin receptor 1A involved_in NAS PMID:1560825 UniProt PMID:1560825 RGD:1298691 NCBI chr 7:59,999,743...60,003,667
Ensembl chr 7:59,999,738...60,003,837 		JBrowse link
G Hmgb1 high mobility group box 1 acts_upstream_of_or_within ISO MGI:3530901 (PMID:10391216) RGD PMID:10391216 NCBI chr12:11,009,236...11,015,941
Ensembl chr16:39,039,050...39,041,327
Ensembl chr12:39,039,050...39,041,327 		JBrowse link
G Phka1 phosphorylase kinase regulatory subunit alpha 1 involved_in ISO
IEA 		(PMID:33799212)
GO_REF:0000107 		RGD
Ensembl		 PMID:33799212 GO_REF:0000107 NCBI chr  X:71,639,701...71,778,465
Ensembl chr  X:71,641,246...71,778,320 		JBrowse link
G Phkb phosphorylase kinase regulatory subunit beta involved_in ISO (PMID:36077341) RGD PMID:36077341 NCBI chr19:37,179,937...37,383,979
Ensembl chr19:37,186,042...37,383,877 		JBrowse link
G Phkg2 phosphorylase kinase catalytic subunit gamma 2 involved_in IMP PMID:6615485 FlyBase PMID:6615485 RGD:405650328 NCBI chr 1:191,614,738...191,627,615
Ensembl chr 1:191,614,865...191,627,616 		JBrowse link
regulation of glycogen catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pomc proopiomelanocortin acts_upstream_of_or_within ISO MGI:2687084 (PMID:21184805) RGD PMID:21184805 NCBI chr 6:32,659,137...32,665,175
Ensembl chr 6:32,659,346...32,665,173 		JBrowse link
G Ppp1ca protein phosphatase 1 catalytic subunit alpha IDA RGD PMID:7720853 RGD:2304267 NCBI chr 1:210,914,576...210,918,193
Ensembl chr 1:210,914,567...210,918,193 		JBrowse link
G Ppp1cb protein phosphatase 1 catalytic subunit beta IDA RGD PMID:7720853 RGD:2304267 NCBI chr 6:29,681,099...29,712,835
Ensembl chr 6:29,681,100...29,712,924 		JBrowse link
G Ppp1r3b protein phosphatase 1, regulatory subunit 3B involved_in IDA
IEA 		GO_REF:0000117
GO_REF:0000002 		UniProt
InterPro
RGD		 PMID:7720853 PMID:11716774 GO_REF:0000002 GO_REF:0000117, RGD:2304267, RGD:2306167 NCBI chr16:63,533,318...63,545,683
Ensembl chr16:63,532,842...63,549,997 		JBrowse link
G Ppp1r3c protein phosphatase 1, regulatory subunit 3C involved_in IDA
IEA 		GO_REF:0000117 UniProt
RGD		 PMID:11716774 GO_REF:0000117, RGD:2306167 NCBI chr 1:243,873,524...243,878,527
Ensembl chr 1:243,871,704...243,878,835 		JBrowse link
G Ppp1r3d protein phosphatase 1, regulatory subunit 3D IDA RGD PMID:11716774 RGD:2306167 NCBI chr 3:185,880,087...185,883,158
Ensembl chr 3:185,876,709...185,883,703 		JBrowse link
G Ppp1r3e protein phosphatase 1, regulatory subunit 3E IDA RGD PMID:15752363 RGD:2306166 NCBI chr15:32,318,435...32,319,595 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19688
    cellular process 18845
      metabolic process 11694
        generation of precursor metabolites and energy 560
          energy derivation by oxidation of organic compounds 506
            energy reserve metabolic process 113
              glycogen metabolic process 100
                glycogen catabolic process 37
                  glycogen catabolic process via dextrin 0
                  glycogen catabolic process via dextrin and maltose 0
                  glycophagy 12
                  negative regulation of glycogen catabolic process 3
                  positive regulation of glycogen catabolic process 7
                  regulation of glycogen catabolic process + 15
Path 2
Term Annotations click to browse term
  biological_process 19688
    cellular process 18845
      metabolic process 11694
        primary metabolic process 10271
          carbohydrate metabolic process 617
            polysaccharide metabolic process 120
              glucan metabolic process 102
                glucan catabolic process 38
                  glycogen catabolic process 37
                    glycogen catabolic process via dextrin 0
                    glycogen catabolic process via dextrin and maltose 0
                    glycophagy 12
                    negative regulation of glycogen catabolic process 3
                    positive regulation of glycogen catabolic process 7
                    regulation of glycogen catabolic process + 15
paths to the root