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ONTOLOGY REPORT - ANNOTATIONS

Term:glycogen catabolic process
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Accession:GO:0005980 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues.
Synonyms:exact_synonym: glycogen breakdown;   glycogen catabolism;   glycogen degradation;   glycogenolysis
 xref: MetaCyc:GLYCOCAT-PWY


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glycogen catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adra1b adrenoceptor alpha 1B acts_upstream_of ISO MGI:2148638 (MGI:3027459|PMID:14581480) RGD PMID:14581480 MGI:3027459 NCBI chr10:28,255,025...28,373,418
Ensembl chr10:28,255,025...28,312,919 		JBrowse link
G Adrb1 adrenoceptor beta 1 IDA RGD PMID:17911346 RGD:5129142 NCBI chr 1:255,772,217...255,773,617
Ensembl chr 1:255,771,597...255,807,259 		JBrowse link
G Agl amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase involved_in IMP
IBA
ISO
IDA		 PMID:21873635
MGI:4432988|MGI:5661387 (MGI:5577197|PMID:24613482), (MGI:5617655|PMID:25092169)		 RGD PMID:24613482 PMID:25092169 PMID:9281456 PMID:21873635 PMID:6449198 More... MGI:5577197 MGI:5617655, RGD:1598779, RGD:13792537, RGD:1642743, RGD:2304191, RGD:1642741 NCBI chr 2:204,705,053...204,760,966
Ensembl chr 2:204,705,053...204,760,828 		JBrowse link
G G6pc1 glucose-6-phosphatase catalytic subunit 1 acts_upstream_of_or_within ISO MGI:2387343 (MGI:1351534|PMID:10625614) RGD PMID:10625614 MGI:1351534 NCBI chr10:86,307,400...86,318,766
Ensembl chr10:86,257,668...86,333,804 		JBrowse link
G Gaa alpha glucosidase involved_in
acts_upstream_of_or_within		 IMP
IBA
ISO
IDA		 PMID:21873635
MGI:2148550|MGI:2179955|MGI:2179960|MGI:2179961 (MGI:2136118|PMID:11328962), (MGI:2157196|PMID:11785984), (MGI:2179452|PMID:10838256)
(PMID:29061980), (PMID:9505277)		 RGD PMID:9505277 PMID:10838256 PMID:11328962 PMID:11785984 PMID:29061980 More... MGI:2136118 MGI:2157196 MGI:2179452, RGD:1599504, RGD:13792537, RGD:1599506 NCBI chr10:104,529,673...104,546,836
Ensembl chr10:104,529,747...104,546,836 		JBrowse link
G Hmgb1 high mobility group box 1 acts_upstream_of ISO MGI:3530901 (MGI:1339514|PMID:10391216) RGD PMID:10391216 MGI:1339514 NCBI chr12:5,973,062...5,978,565
Ensembl chr12:5,901,586...5,978,565 		JBrowse link
G Pfkm phosphofructokinase, muscle involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:4356541 (MGI:4356361|PMID:19696889)		 Ensembl
RGD		 PMID:19696889 GO_REF:0000107 MGI:4356361 NCBI chr 7:129,221,679...129,259,192
Ensembl chr 7:129,221,653...129,259,192 		JBrowse link
G Pgm2 phosphoglucomutase 2 involved_in ISO (MGI:7261136|PMID:927504) RGD PMID:927504 MGI:7261136 NCBI chr14:44,166,314...44,199,823
Ensembl chr14:44,164,425...44,199,967 		JBrowse link
G Phkg2 phosphorylase kinase catalytic subunit gamma 2 involved_in ISO MGI:5629316 (MGI:7259924|PMID:34083142) RGD PMID:34083142 MGI:7259924 NCBI chr 1:182,184,362...182,197,124
Ensembl chr 1:182,184,650...182,197,124 		JBrowse link
G Pygb glycogen phosphorylase B involved_in IDA
IBA
IEA
ISO		 PMID:21873635
GO_REF:0000117
(MGI:6717518|PMID:32446205)		 UniProt
RGD		 PMID:32446205 PMID:16226229 PMID:21873635 PMID:11071367 PMID:10634496 GO_REF:0000117 MGI:6717518, RGD:1642804, RGD:13792537, RGD:2304126, RGD:1642809 NCBI chr 3:139,611,724...139,658,521
Ensembl chr 3:139,611,749...139,663,553 		JBrowse link
G Pygl glycogen phosphorylase L involved_in IDA
IBA
ISO		 PMID:21873635
MGI:4362669 (MGI:6392116|PMID:31701076)		 RGD PMID:31701076 PMID:15152027 PMID:21873635 PMID:6449198 PMID:114169 MGI:6392116, RGD:1642805, RGD:13792537, RGD:1642743, RGD:2304128 NCBI chr 6:88,697,598...88,740,260
Ensembl chr 6:88,697,593...88,740,310 		JBrowse link
G Pygm glycogen phosphorylase, muscle associated involved_in
acts_upstream_of_or_within		 IDA
IBA
IEA
ISO		 PMID:21873635
GO_REF:0000117
MGI:5696972 (MGI:6393156|PMID:31511858)
(PMID:1150650), (PMID:8316268)
(MGI:3052259|PMID:15282316), (MGI:4844074|PMID:17689562)		 UniProt
RGD		 PMID:1150650 PMID:8316268 PMID:15282316 PMID:17689562 PMID:31511858 More... GO_REF:0000117 MGI:3052259 MGI:4844074 MGI:6393156, RGD:1599986, RGD:13792537, RGD:1642743, RGD:1599897, RGD:2304126, RGD:1642811 NCBI chr 1:203,690,550...203,705,369
Ensembl chr 1:203,690,533...203,705,368 		JBrowse link
G Stbd1 starch binding domain 1 involved_in ISO
ISS		 (PMID:20810658)
GO_REF:0000024		 RGD
GO_Central		 PMID:20810658 GO_REF:0000024 NCBI chr14:15,470,452...15,473,857
Ensembl chr14:15,469,582...15,477,443 		JBrowse link
glycophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gaa alpha glucosidase involved_in ISO
IEA		 MGI:2148550 (MGI:2655991|PMID:12739885)
GO_REF:0000107		 RGD
Ensembl		 PMID:12739885 GO_REF:0000107 MGI:2655991 NCBI chr10:104,529,673...104,546,836
Ensembl chr10:104,529,747...104,546,836 		JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 involved_in ISO (MGI:7261139|PMID:20810658) RGD PMID:20810658 MGI:7261139 NCBI chr 4:162,980,309...162,989,452
Ensembl chr 4:162,980,249...162,989,450 		JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:13,161,648...13,225,560
Ensembl chr 5:13,161,648...13,225,560 		JBrowse link
G Stbd1 starch binding domain 1 involved_in ISO
ISS		 (PMID:20810658)
GO_REF:0000024
(MGI:7261139|PMID:20810658)		 RGD
GO_Central		 PMID:20810658 GO_REF:0000024 MGI:7261139 NCBI chr14:15,470,452...15,473,857
Ensembl chr14:15,469,582...15,477,443 		JBrowse link
negative regulation of glycogen catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adra1b adrenoceptor alpha 1B acts_upstream_of_or_within ISO MGI:2148638 (MGI:3027459|PMID:14581480) RGD PMID:14581480 MGI:3027459 NCBI chr10:28,255,025...28,373,418
Ensembl chr10:28,255,025...28,312,919 		JBrowse link
G Ins2 insulin 2 involved_in ISO (PMID:381941) RGD PMID:381941 NCBI chr 1:197,843,277...197,992,522
Ensembl chr 1:197,843,281...197,864,775 		JBrowse link
positive regulation of glycogen catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adcy10 adenylate cyclase 10 IMP RGD PMID:22998876 RGD:329412477 NCBI chr13:77,747,752...77,833,952
Ensembl chr13:77,768,468...77,833,951 		JBrowse link
G Adra1b adrenoceptor alpha 1B acts_upstream_of_or_within ISO MGI:2148638 (MGI:3027459|PMID:14581480) RGD PMID:14581480 MGI:3027459 NCBI chr10:28,255,025...28,373,418
Ensembl chr10:28,255,025...28,312,919 		JBrowse link
G Avpr1a arginine vasopressin receptor 1A involved_in NAS PMID:1560825 UniProt PMID:1560825 RGD:1298691 NCBI chr 7:58,114,306...58,118,230
Ensembl chr 7:58,114,284...58,122,215 		JBrowse link
G Hmgb1 high mobility group box 1 acts_upstream_of_or_within ISO MGI:3530901 (MGI:1339514|PMID:10391216) RGD PMID:10391216 MGI:1339514 NCBI chr12:5,973,062...5,978,565
Ensembl chr12:5,901,586...5,978,565 		JBrowse link
regulation of glycogen catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ppp1ca protein phosphatase 1 catalytic subunit alpha IDA RGD PMID:7720853 RGD:2304267 NCBI chr 1:201,485,117...201,488,734
Ensembl chr 1:201,485,085...201,497,327 		JBrowse link
G Ppp1cb protein phosphatase 1 catalytic subunit beta IDA RGD PMID:7720853 RGD:2304267 NCBI chr 6:23,958,813...23,992,841
Ensembl chr 6:23,960,998...23,992,824 		JBrowse link
G Ppp1r3b protein phosphatase 1, regulatory subunit 3B acts_upstream_of_or_within IDA
ISO		 (PMID:22225877) RGD PMID:22225877 PMID:7720853 PMID:11716774 RGD:2304267, RGD:2306167 NCBI chr16:56,830,011...56,842,395
Ensembl chr16:56,829,660...56,842,406 		JBrowse link
G Ppp1r3c protein phosphatase 1, regulatory subunit 3C IDA RGD PMID:11716774 RGD:2306167 NCBI chr 1:234,460,958...234,465,961
Ensembl chr 1:234,460,652...234,465,961 		JBrowse link
G Ppp1r3d protein phosphatase 1, regulatory subunit 3D IDA RGD PMID:11716774 RGD:2306167 NCBI chr 3:165,502,384...165,505,455
Ensembl chr 3:165,502,384...165,505,455 		JBrowse link
G Ppp1r3e protein phosphatase 1, regulatory subunit 3E IDA RGD PMID:15752363 RGD:2306166 NCBI chr15:28,348,443...28,349,603
Ensembl chr15:28,347,854...28,349,603 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19818
    metabolic process 12096
      cellular metabolic process 7496
        generation of precursor metabolites and energy 552
          energy derivation by oxidation of organic compounds 367
            energy reserve metabolic process 95
              glycogen metabolic process 85
                glycogen catabolic process 24
                  glycophagy 4
                  negative regulation of glycogen catabolic process 2
                  positive regulation of glycogen catabolic process 4
                  regulation of glycogen catabolic process + 11
paths to the root