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ONTOLOGY REPORT - ANNOTATIONS

Term:glycogen catabolic process
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Accession:GO:0005980 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues.
Synonyms:exact_synonym: glycogen breakdown;   glycogen catabolism;   glycogen degradation;   glycogenolysis


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glycogen catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adra1b adrenoceptor alpha 1B acts_upstream_of ISO MGI:2148638 (PMID:14581480) RGD PMID:14581480 NCBI chr10:28,255,025...28,373,418
Ensembl chr10:28,255,025...28,312,919 		JBrowse link
G Adrb1 adrenoceptor beta 1 IDA RGD PMID:17911346 RGD:5129142 NCBI chr 1:255,771,962...255,774,973
Ensembl chr 1:255,771,597...255,807,259 		JBrowse link
G Agl amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase involved_in IMP
ISO
IBA
IDA		 MGI:4432988|MGI:5661387 (PMID:24613482), (PMID:25092169)
GO_REF:0000033		 RGD
GO_Central		 PMID:24613482 PMID:25092169 PMID:9281456 PMID:6449198 PMID:11766064 More... GO_REF:0000033, RGD:1598779, RGD:1642743, RGD:2304191, RGD:1642741 NCBI chr 2:204,705,053...204,760,966
Ensembl chr 2:204,705,053...204,760,828 		JBrowse link
G G6pc1 glucose-6-phosphatase catalytic subunit 1 acts_upstream_of_or_within ISO MGI:2387343 (PMID:10625614) RGD PMID:10625614 NCBI chr10:86,307,400...86,318,766
Ensembl chr10:86,257,668...86,333,804 		JBrowse link
G Gaa alpha glucosidase acts_upstream_of_or_within
involved_in		 IMP
ISO
IBA
IDA		 MGI:2148550|MGI:2179955|MGI:2179960|MGI:2179961 (PMID:10838256), (PMID:11328962), (PMID:11785984)
GO_REF:0000033
(PMID:29061980), (PMID:9505277)		 RGD
GO_Central		 PMID:9505277 PMID:10838256 PMID:11328962 PMID:11785984 PMID:29061980 More... GO_REF:0000033, RGD:1599504, RGD:1599506 NCBI chr10:104,529,673...104,546,836
Ensembl chr10:104,529,747...104,546,836 		JBrowse link
G Hmgb1 high mobility group box 1 acts_upstream_of ISO MGI:3530901 (PMID:10391216) RGD PMID:10391216 NCBI chr12:5,972,950...5,979,658
Ensembl chr12:5,901,586...5,978,565
Ensembl chr16:5,901,586...5,978,565 		JBrowse link
G Pfkm phosphofructokinase, muscle involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:4356541 (PMID:19696889)		 Ensembl
RGD		 PMID:19696889 GO_REF:0000107 NCBI chr 7:129,221,679...129,259,192
Ensembl chr 7:129,221,653...129,259,192 		JBrowse link
G Pgm2 phosphoglucomutase 2 involved_in ISO (PMID:927504) RGD PMID:927504 NCBI chr14:44,166,314...44,199,828
Ensembl chr14:44,164,425...44,199,967 		JBrowse link
G Phkg2 phosphorylase kinase catalytic subunit gamma 2 involved_in ISO MGI:5629316 (PMID:34083142) RGD PMID:34083142 NCBI chr 1:182,184,362...182,197,124
Ensembl chr 1:182,184,650...182,197,124 		JBrowse link
G Pygb glycogen phosphorylase B involved_in IDA
ISO
IBA
IEA		 (PMID:32446205)
GO_REF:0000033
GO_REF:0000117		 RGD
GO_Central
UniProt		 PMID:32446205 PMID:16226229 PMID:11071367 PMID:10634496 GO_REF:0000033 GO_REF:0000117, RGD:1642804, RGD:2304126, RGD:1642809 NCBI chr 3:139,611,724...139,658,521
Ensembl chr 3:139,611,749...139,663,553 		JBrowse link
G Pygl glycogen phosphorylase L involved_in IDA
ISO
IBA		 MGI:4362669 (PMID:31701076)
GO_REF:0000033		 RGD
GO_Central		 PMID:31701076 PMID:15152027 PMID:6449198 PMID:114169 GO_REF:0000033, RGD:1642805, RGD:1642743, RGD:2304128 NCBI chr 6:88,697,598...88,740,260
Ensembl chr 6:88,697,593...88,740,310 		JBrowse link
G Pygm glycogen phosphorylase, muscle associated acts_upstream_of_or_within
involved_in		 IDA
ISO
IBA
IEA		 (PMID:15282316), (PMID:17689562)
MGI:5696972 (PMID:31511858)
GO_REF:0000033
GO_REF:0000117
(PMID:1150650), (PMID:8316268)		 RGD
GO_Central
UniProt		 PMID:1150650 PMID:8316268 PMID:15282316 PMID:17689562 PMID:31511858 More... GO_REF:0000033 GO_REF:0000117, RGD:1599986, RGD:1642743, RGD:1599897, RGD:2304126, RGD:1642811 NCBI chr 1:203,690,550...203,705,369
Ensembl chr 1:203,690,533...203,705,368 		JBrowse link
G Stbd1 starch binding domain 1 involved_in ISO
ISS		 (PMID:20810658)
GO_REF:0000024		 RGD
GO_Central		 PMID:20810658 GO_REF:0000024 NCBI chr14:15,470,452...15,473,857
Ensembl chr14:15,469,582...15,477,443 		JBrowse link
glycophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg12 autophagy related 12 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:39,452,247...39,462,424
Ensembl chr18:39,452,191...39,462,418 		JBrowse link
G Atg2a autophagy related 2A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:203,542,559...203,562,242
Ensembl chr 1:203,542,559...203,562,242 		JBrowse link
G Atg2b autophagy related 2B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:124,522,283...124,592,412
Ensembl chr 6:124,525,523...124,592,015 		JBrowse link
G Atg3 autophagy related 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:55,624,914...55,653,249
Ensembl chr11:55,624,917...55,653,224 		JBrowse link
G Gaa alpha glucosidase involved_in IEA
ISO		 GO_REF:0000107
MGI:2148550 (PMID:12739885)		 Ensembl
RGD		 PMID:12739885 GO_REF:0000107 NCBI chr10:104,529,673...104,546,836
Ensembl chr10:104,529,747...104,546,836 		JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 involved_in ISO (PMID:20810658) RGD PMID:20810658 NCBI chr 4:162,980,309...162,989,452
Ensembl chr 4:162,980,249...162,989,450 		JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:13,161,648...13,225,560
Ensembl chr 5:13,161,648...13,225,560 		JBrowse link
G Stbd1 starch binding domain 1 involved_in ISO
ISS		 (PMID:20810658)
GO_REF:0000024		 RGD
GO_Central		 PMID:20810658 GO_REF:0000024 NCBI chr14:15,470,452...15,473,857
Ensembl chr14:15,469,582...15,477,443 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:14,776,280...14,782,202
Ensembl chr  X:14,776,293...14,782,202 		JBrowse link
G Wdr45b WD repeat domain 45B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:106,597,558...106,629,488
Ensembl chr10:106,599,364...106,629,441 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:94,542,946...94,580,174
Ensembl chr10:94,542,946...94,579,846 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:11,911,369...11,939,799
Ensembl chr12:11,911,337...11,939,794 		JBrowse link
negative regulation of glycogen catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adra1b adrenoceptor alpha 1B acts_upstream_of_or_within ISO MGI:2148638 (PMID:14581480) RGD PMID:14581480 NCBI chr10:28,255,025...28,373,418
Ensembl chr10:28,255,025...28,312,919 		JBrowse link
G Ins2 insulin 2 involved_in ISO (PMID:381941) RGD PMID:381941 NCBI chr 1:197,843,277...197,992,522
Ensembl chr 1:197,843,281...197,864,775 		JBrowse link
G Ppp1r3b protein phosphatase 1, regulatory subunit 3B involved_in ISO
IEA		 (PMID:22225877)
GO_REF:0000107		 RGD
Ensembl		 PMID:22225877 GO_REF:0000107 NCBI chr16:56,830,011...56,842,395
Ensembl chr16:56,829,660...56,842,406 		JBrowse link
positive regulation of glycogen catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adcy10 adenylate cyclase 10 IMP RGD PMID:22998876 RGD:329412477 NCBI chr13:77,747,752...77,833,952
Ensembl chr13:77,768,468...77,833,951 		JBrowse link
G Adra1b adrenoceptor alpha 1B acts_upstream_of_or_within ISO MGI:2148638 (PMID:14581480) RGD PMID:14581480 NCBI chr10:28,255,025...28,373,418
Ensembl chr10:28,255,025...28,312,919 		JBrowse link
G Avpr1a arginine vasopressin receptor 1A involved_in NAS PMID:1560825 UniProt PMID:1560825 RGD:1298691 NCBI chr 7:58,114,306...58,118,230
Ensembl chr 7:58,114,284...58,122,215 		JBrowse link
G Hmgb1 high mobility group box 1 acts_upstream_of_or_within ISO MGI:3530901 (PMID:10391216) RGD PMID:10391216 NCBI chr12:5,972,950...5,979,658
Ensembl chr12:5,901,586...5,978,565
Ensembl chr16:5,901,586...5,978,565 		JBrowse link
G Phka1 phosphorylase kinase regulatory subunit alpha 1 involved_in ISO (PMID:33799212) RGD PMID:33799212 NCBI chr  X:67,601,302...67,738,504
Ensembl chr  X:67,601,302...67,738,455 		JBrowse link
G Phkg2 phosphorylase kinase catalytic subunit gamma 2 involved_in ISO
IMP		 MGI:5629316 (PMID:34083142)
PMID:6615485		 RGD PMID:34083142 PMID:6615485 RGD:405650328 NCBI chr 1:182,184,362...182,197,124
Ensembl chr 1:182,184,650...182,197,124 		JBrowse link
regulation of glycogen catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ppp1ca protein phosphatase 1 catalytic subunit alpha IDA RGD PMID:7720853 RGD:2304267 NCBI chr 1:201,485,117...201,488,734
Ensembl chr 1:201,485,085...201,497,327 		JBrowse link
G Ppp1cb protein phosphatase 1 catalytic subunit beta IDA RGD PMID:7720853 RGD:2304267 NCBI chr 6:23,958,813...23,992,841
Ensembl chr 6:23,960,998...23,992,824 		JBrowse link
G Ppp1r3b protein phosphatase 1, regulatory subunit 3B IDA RGD PMID:7720853 PMID:11716774 RGD:2304267, RGD:2306167 NCBI chr16:56,830,011...56,842,395
Ensembl chr16:56,829,660...56,842,406 		JBrowse link
G Ppp1r3c protein phosphatase 1, regulatory subunit 3C IDA RGD PMID:11716774 RGD:2306167 NCBI chr 1:234,460,958...234,465,961
Ensembl chr 1:234,460,652...234,465,961 		JBrowse link
G Ppp1r3d protein phosphatase 1, regulatory subunit 3D IDA RGD PMID:11716774 RGD:2306167 NCBI chr 3:165,502,384...165,505,455
Ensembl chr 3:165,502,384...165,505,455 		JBrowse link
G Ppp1r3e protein phosphatase 1, regulatory subunit 3E IDA RGD PMID:15752363 RGD:2306166 NCBI chr15:28,348,443...28,349,603
Ensembl chr15:28,347,854...28,349,603 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20115
    metabolic process 12288
      macromolecule metabolic process 10146
        polysaccharide metabolic process 118
          polysaccharide catabolic process 35
            glucan catabolic process 34
              glycogen catabolic process 33
                glycophagy 12
                negative regulation of glycogen catabolic process 3
                positive regulation of glycogen catabolic process 6
                regulation of glycogen catabolic process + 13
Path 2
Term Annotations click to browse term
  biological_process 20115
    metabolic process 12288
      primary metabolic process 10923
        carbohydrate metabolic process 631
          polysaccharide metabolic process 118
            glucan metabolic process 97
              glucan catabolic process 34
                glycogen catabolic process 33
                  glycophagy 12
                  negative regulation of glycogen catabolic process 3
                  positive regulation of glycogen catabolic process 6
                  regulation of glycogen catabolic process + 13
paths to the root