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small ears - Ontology Report - Rat Genome Database

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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term:small ears
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Accession:MP:0000018 term browser browse the term
Definition:outer ears of a smaller than normal size
Synonyms:exact_synonym: decreased ear size;   reduced ear size;   reduced pinna size
 narrow_synonym: Microtia
 xref: HP:0008551

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show annotations for term's descendants           Sort by:
small ears term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G 4930453N24Rik RIKEN cDNA 4930453N24 gene IAGP MGI PMID:8830097 NCBI chr16:64,583,267...64,592,735
Ensembl chr16:64,572,114...64,591,524 		JBrowse link
G Bcl2 B cell leukemia/lymphoma 2 IAGP MGI PMID:7812968 PMID:8170972 PMID:8402909 NCBI chr 1:106,465,906...106,642,020
Ensembl chr 1:106,465,908...106,642,004 		JBrowse link
G Bmp5 bone morphogenetic protein 5 IAGP MGI PMID:1339316 PMID:5556347 PMID:9071596 PMID:9475750 PMID:12644183 More... NCBI chr 9:75,682,647...75,807,598
Ensembl chr 9:75,682,646...75,807,592 		JBrowse link
G Ccn2 cellular communication network factor 2 IAGP MGI PMID:20877562 NCBI chr10:24,471,340...24,474,581
Ensembl chr10:24,471,340...24,474,581 		JBrowse link
G Chrd chordin IAGP MGI PMID:12810603 NCBI chr16:20,551,528...20,561,132
Ensembl chr16:20,551,877...20,561,134 		JBrowse link
G Dscam DS cell adhesion molecule IAGP MGI PMID:21904980 NCBI chr16:96,388,652...96,971,935
Ensembl chr16:96,392,040...96,971,952 		JBrowse link
G E2f1 E2F transcription factor 1 IAGP MGI PMID:35593225 NCBI chr 2:154,401,320...154,411,812
Ensembl chr 2:154,401,327...154,411,812 		JBrowse link
G Fgf10 fibroblast growth factor 10 IAGP MGI PMID:12761848 NCBI chr13:118,851,199...118,928,651
Ensembl chr13:118,806,327...118,928,651 		JBrowse link
G Fgf8 fibroblast growth factor 8 IAGP MGI PMID:15996652 NCBI chr19:45,724,930...45,731,380
Ensembl chr19:45,725,237...45,731,354 		JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 IAGP MGI PMID:12514106 PMID:15630379 PMID:21479780 NCBI chr 8:26,008,808...26,067,819
Ensembl chr 8:26,003,670...26,065,734 		JBrowse link
G Flg filaggrin IAGP MGI PMID:4557539 NCBI chr 3:93,180,853...93,200,996
Ensembl chr 3:93,180,830...93,200,993 		JBrowse link
G Foxi3 forkhead box I3 IAGP MGI PMID:37041148 NCBI chr 6:70,933,590...70,938,050
Ensembl chr 6:70,933,515...70,938,050 		JBrowse link
G Foxp3 forkhead box P3 IAGP MGI PMID:2053595 PMID:2320565 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484 		JBrowse link
G Frem2 Fras1 related extracellular matrix protein 2 IAGP MGI PMID:16087869 NCBI chr 3:53,421,359...53,566,014
Ensembl chr 3:53,421,359...53,564,776 		JBrowse link
G Gbx2 gastrulation brain homeobox 2 IAGP MGI PMID:15996652 NCBI chr 1:89,855,684...89,858,898
Ensembl chr 1:89,855,678...89,858,901 		JBrowse link
G Gpr161 G protein-coupled receptor 161 IAGP MGI PMID:34887903 NCBI chr 1:165,108,760...165,154,314
Ensembl chr 1:165,123,358...165,154,314 		JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:19541608 PMID:34887903 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443 		JBrowse link
G Hic1 hypermethylated in cancer 1 IAGP MGI PMID:10655551 NCBI chr11:75,052,203...75,059,970
Ensembl chr11:75,055,391...75,060,345 		JBrowse link
G Hmga2 high mobility group AT-hook 2 IAGP MGI PMID:2305264 PMID:14794889 NCBI chr10:120,197,173...120,312,374
Ensembl chr10:120,197,180...120,312,374 		JBrowse link
G Hoxa1 homeobox A1 IAGP MGI PMID:10529419 NCBI chr 6:52,132,573...52,135,299
Ensembl chr 6:52,132,570...52,135,297 		JBrowse link
G Hoxa2 homeobox A2 IAGP MGI PMID:10529419 PMID:16221728 NCBI chr 6:52,139,389...52,141,808
Ensembl chr 6:52,139,397...52,141,811 		JBrowse link
G Idua iduronidase, alpha-L IAGP MGI PMID:17920451 NCBI chr 5:108,808,197...108,833,312
Ensembl chr 5:108,808,197...108,832,423 		JBrowse link
G Itpr3 inositol 1,4,5-triphosphate receptor 3 IAGP MGI PMID:26234751 NCBI chr17:27,275,976...27,341,197
Ensembl chr17:27,276,278...27,341,197 		JBrowse link
G Mmp14 matrix metallopeptidase 14 (membrane-inserted) IEA MGI NCBI chr14:54,669,055...54,679,913
Ensembl chr14:54,669,069...54,682,821 		JBrowse link
G Pax6 paired box 6 IAGP MGI PMID:3794606 NCBI chr 2:105,499,241...105,528,755
Ensembl chr 2:105,499,245...105,527,709 		JBrowse link
G Pax8 paired box 8 IAGP MGI PMID:14981357 NCBI chr 2:24,310,563...24,365,611
Ensembl chr 2:24,310,572...24,365,611 		JBrowse link
G Prkdc protein kinase, DNA activated, catalytic polypeptide IAGP MGI PMID:17920451 NCBI chr16:15,455,698...15,660,103
Ensembl chr16:15,455,730...15,660,099 		JBrowse link
G Prkra protein kinase, interferon inducible double stranded RNA dependent activator IAGP MGI PMID:16571658 PMID:22194846 PMID:26234751 NCBI chr 2:76,436,385...76,478,614
Ensembl chr 2:76,460,242...76,478,359 		JBrowse link
G Prrx1 paired related homeobox 1 IAGP MGI PMID:9876178 NCBI chr 1:163,072,688...163,142,714
Ensembl chr 1:163,072,688...163,141,279 		JBrowse link
G Prrx2 paired related homeobox 2 IAGP MGI PMID:9876178 NCBI chr 2:30,735,076...30,771,263
Ensembl chr 2:30,724,984...30,771,263 		JBrowse link
G Ptpn11 protein tyrosine phosphatase, non-receptor type 11 IAGP MGI PMID:19541608 NCBI chr 5:121,268,596...121,329,460
Ensembl chr 5:121,268,596...121,329,460 		JBrowse link
G Sfn stratifin IAGP MGI PMID:479550 PMID:6643653 NCBI chr 4:133,327,867...133,329,163
Ensembl chr 4:133,327,867...133,329,479 		JBrowse link
G Snrpb small nuclear ribonucleoprotein B IAGP MGI PMID:35593225 NCBI chr 2:130,013,560...130,031,184
Ensembl chr 2:130,013,555...130,021,323 		JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:15469978 NCBI chr16:18,399,729...18,409,412
Ensembl chr16:18,399,729...18,409,421 		JBrowse link
G Tyrp1 tyrosinase-related protein 1 IEA MGI NCBI chr 4:80,752,360...80,769,973
Ensembl chr 4:80,752,360...80,769,956 		JBrowse link
G Wnt5a wingless-type MMTV integration site family, member 5A IAGP MGI PMID:10021340 NCBI chr14:28,224,962...28,249,405
Ensembl chr14:28,226,707...28,249,405 		JBrowse link
outer ear hypoplasia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G n-TUtca2 nuclear encoded tRNA selenocysteine 2 (anticodon TCA) IAGP MGI PMID:19696890 NCBI chr 7:19,035,169...19,035,255 JBrowse link
G Pbx1 pre B cell leukemia homeobox 1 IAGP MGI PMID:11566859 NCBI chr 1:167,946,933...168,259,898
Ensembl chr 1:167,946,933...168,259,839 		JBrowse link
G Prrx1 paired related homeobox 1 IAGP MGI PMID:9876178 NCBI chr 1:163,072,688...163,142,714
Ensembl chr 1:163,072,688...163,141,279 		JBrowse link
G Prrx2 paired related homeobox 2 IAGP MGI PMID:9876178 NCBI chr 2:30,735,076...30,771,263
Ensembl chr 2:30,724,984...30,771,263 		JBrowse link
short ears term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 B cell leukemia/lymphoma 2 IAGP MGI PMID:11709185 NCBI chr 1:106,465,906...106,642,020
Ensembl chr 1:106,465,908...106,642,004 		JBrowse link
G Bmp5 bone morphogenetic protein 5 IAGP MGI PMID:1339316 PMID:5556347 PMID:7710253 PMID:26234751 NCBI chr 9:75,682,647...75,807,598
Ensembl chr 9:75,682,646...75,807,592 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor, type 1A IAGP MGI PMID:15492776 NCBI chr14:34,133,018...34,225,335
Ensembl chr14:34,132,691...34,225,298 		JBrowse link
G Flg filaggrin IAGP MGI PMID:4557539 NCBI chr 3:93,180,853...93,200,996
Ensembl chr 3:93,180,830...93,200,993 		JBrowse link
G Lmna lamin A IAGP MGI PMID:20376364 NCBI chr 3:88,388,455...88,413,842
Ensembl chr 3:88,387,454...88,417,263 		JBrowse link
G Myo6 myosin VI IEA MGI NCBI chr 9:80,072,262...80,219,011
Ensembl chr 9:80,072,313...80,219,011 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 17108
    craniofacial phenotype 1668
      abnormal craniofacial morphology 1668
        abnormal outer ear morphology 165
          small ears 41
            outer ear hypoplasia 4
            short ears 6
paths to the root