Tyrp1 (tyrosinase-related protein 1) - Rat Genome Database

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Gene: Tyrp1 (tyrosinase-related protein 1) Mus musculus
Analyze
Symbol: Tyrp1
Name: tyrosinase-related protein 1
RGD ID: 11468
MGI Page MGI
Description: Enables protein homodimerization activity. Involved in positive regulation of melanin biosynthetic process. Acts upstream of or within several processes, including acetoacetic acid metabolic process; melanocyte differentiation; and melanosome organization. Located in melanosome membrane. Is expressed in several structures, including hip; nervous system; sensory organ; skeleton; and skin. Human ortholog(s) of this gene implicated in oculocutaneous albinism; oculocutaneous albinism type III; and pigmentation disease. Orthologous to human TYRP1 (tyrosinase related protein 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 5,6-dihydroxyindole-2-carboxylic acid oxidase; b; brown; brown locus protein; catalase B; DHICA oxidase; iris stromal atrophy; isa; Oc; Oca3; TR; TRP; TRP-1; TRP1; Ty; tyrosinase related protein; Tyrp
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39480,752,360 - 80,769,973 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl480,752,360 - 80,769,956 (+)EnsemblGRCm39 Ensembl
GRCm38480,834,123 - 80,851,736 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl480,834,123 - 80,851,719 (+)EnsemblGRCm38mm10GRCm38
MGSCv37480,480,134 - 80,497,622 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36480,305,461 - 80,322,949 (+)NCBIMGSCv36mm8
Celera479,387,103 - 79,404,579 (+)NCBICelera
Cytogenetic Map4C3NCBI
cM Map437.89NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-artemisinic acid  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-tert-butylphenol  (ISO)
5-fluorouracil  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
afzelin  (ISO)
all-trans-retinoic acid  (ISO)
alpha-melanocyte stimulating hormone  (EXP)
arsenous acid  (EXP)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (ISO)
cadmium dichloride  (ISO)
cannabidiol  (ISO)
CGP 52608  (ISO)
chaetocin  (EXP)
chlorambucil  (EXP)
chlorogenic acid  (ISO)
cocaine  (ISO)
colforsin daropate hydrochloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
cordycepin  (EXP)
decabromodiphenyl ether  (ISO)
diarsenic trioxide  (EXP)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
emodin  (ISO)
etoposide  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
gemcitabine  (ISO)
genistein  (ISO)
isorhamnetin  (EXP)
kojic acid  (EXP)
lamivudine  (ISO)
Lasiocarpine  (ISO)
LY294002  (EXP)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
N-ethyl-N-nitrosourea  (EXP)
N-methyl-N-nitrosourea  (EXP)
N-Nitrosopyrrolidine  (ISO)
nickel sulfate  (ISO)
nonanedioic acid  (EXP)
O-methyleugenol  (ISO)
phytol  (EXP)
Pomiferin  (ISO)
puerarin  (ISO)
quercetin  (EXP)
resorcinol  (EXP)
resveratrol  (ISO)
Rosavin  (ISO)
rotenone  (ISO)
SB 203580  (ISO)
SB 431542  (ISO)
scoparone  (EXP)
sodium arsenite  (ISO)
Sweroside  (EXP)
taurine  (EXP)
testosterone enanthate  (ISO)
theophylline  (EXP)
thiram  (ISO)
triclosan  (ISO)
valproic acid  (EXP,ISO)
vemurafenib  (ISO)
vorinostat  (ISO)
zidovudine  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal behavior  (IEA)
abnormal choroid melanin granule morphology  (IAGP)
abnormal coat/hair pigmentation  (IAGP)
abnormal dorsoventral coat patterning  (IEA)
abnormal ear morphology  (IAGP)
abnormal ear physiology  (IAGP)
abnormal endocochlear potential  (IAGP)
abnormal eye pigmentation  (IAGP)
abnormal hair cycle  (IEA)
abnormal hair follicle melanin granule morphology  (IEA)
abnormal hair shaft melanin granule distribution  (IEA)
abnormal hair shaft melanin granule morphology  (IEA)
abnormal hearing physiology  (IAGP)
abnormal inner ear morphology  (IAGP)
abnormal intraocular pressure  (IAGP)
abnormal iris morphology  (IAGP)
abnormal iris pigment epithelium  (IAGP)
abnormal iris pigmentation  (IAGP)
abnormal iris stroma morphology  (IAGP)
abnormal melanocyte morphology  (IAGP)
abnormal melanosome morphology  (IAGP)
abnormal mitosis  (IAGP)
abnormal retina melanin granule morphology  (IAGP)
abnormal stria vascularis morphology  (IAGP)
abnormal strial intermediate cell morphology  (IAGP)
abnormal tumor susceptibility  (IAGP)
aneuploidy  (IAGP)
decreased bleeding time  (IAGP)
decreased body size  (IEA)
decreased body weight  (IEA)
decreased ear pigmentation  (IEA)
decreased endocochlear potential  (IAGP)
decreased eye pigmentation  (IEA)
decreased tail pigmentation  (IEA)
delayed hair regrowth  (IEA)
diluted coat color  (IAGP)
domed cranium  (IEA)
enlarged hair follicle melanin granules  (IEA)
forebrain hypoplasia  (IAGP)
impaired hematopoiesis  (IAGP)
increased bleeding time  (IAGP)
increased histiocytic sarcoma incidence  (IAGP)
iris atrophy  (IAGP)
irregular coat pigmentation  (IEA)
male infertility  (IEA)
microcephaly  (IAGP)
optic nerve atrophy  (IAGP)
parturition failure  (IAGP)
perinatal lethality, complete penetrance  (IEA)
premature hair loss  (IEA)
prenatal lethality, complete penetrance  (IEA)
reduced female fertility  (IEA)
reduced hair shaft melanin granule number  (IEA)
reduced male fertility  (IEA)
retina ganglion cell degeneration  (IAGP)
small ears  (IEA)
white spotting  (IEA)
yellow coat color  (IEA)
References

References - curated
# Reference Title Reference Citation
1. Mapping genes in the mouse using single-strand conformation polymorphism analysis of recombinant inbred strains and interspecific crosses. Beier DR, etal., Proc Natl Acad Sci U S A 1992 Oct 1;89(19):9102-6.
2. Mutation in and lack of expression of tyrosinase-related protein-1 (TRP-1) in melanocytes from an individual with brown oculocutaneous albinism: a new subtype of albinism classified as "OCA3". Boissy RE, etal., Am J Hum Genet. 1996 Jun;58(6):1145-56.
3. Order of loci on the X-chromosome of the mouse. Lyon MF Genet Res 1966 Feb;7(1):130-3.
4. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. MGD IEA MGD IEA
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
9. Mouse MP Annotation Import Pipeline RGD automated import pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:102659   PMID:196096   PMID:221612   PMID:479550   PMID:536693   PMID:608946   PMID:782223   PMID:791749   PMID:1133851   PMID:1280558   PMID:1292007   PMID:1303241  
PMID:1318721   PMID:1321344   PMID:1352157   PMID:1352884   PMID:1371941   PMID:1378547   PMID:1379092   PMID:1398056   PMID:1409444   PMID:1421760   PMID:1450512   PMID:1630810  
PMID:1639403   PMID:1684952   PMID:1686571   PMID:1693779   PMID:1704135   PMID:1706745   PMID:1748176   PMID:1756209   PMID:1769662   PMID:1836514   PMID:1871601   PMID:1889815  
PMID:1907365   PMID:1908461   PMID:1952626   PMID:1978328   PMID:2037292   PMID:2072972   PMID:2141254   PMID:2212703   PMID:2245916   PMID:2245917   PMID:2303035   PMID:2304907  
PMID:2354437   PMID:2379821   PMID:2400934   PMID:2568329   PMID:2591966   PMID:2850257   PMID:2993652   PMID:2997987   PMID:3008090   PMID:3079812   PMID:3100390   PMID:3132713  
PMID:3166417   PMID:3220432   PMID:3426502   PMID:3475376   PMID:3569904   PMID:3876282   PMID:3971387   PMID:4042679   PMID:4080829   PMID:4209112   PMID:4309830   PMID:4349512  
PMID:4397868   PMID:4634048   PMID:4689339   PMID:4824507   PMID:5031475   PMID:5358144   PMID:5367378   PMID:5424503   PMID:5496133   PMID:5527661   PMID:5558564   PMID:5650006  
PMID:5698855   PMID:5726144   PMID:5902512   PMID:5962396   PMID:6064106   PMID:6067640   PMID:6184409   PMID:6297853   PMID:6330270   PMID:6334582   PMID:6466874   PMID:6607530  
PMID:6696991   PMID:6706951   PMID:6707444   PMID:6831040   PMID:7241566   PMID:7247077   PMID:7439685   PMID:7479744   PMID:7508415   PMID:7607689   PMID:7647459   PMID:7665913  
PMID:7673350   PMID:7696204   PMID:7774911   PMID:7792254   PMID:7806216   PMID:7813420   PMID:7813775   PMID:7849740   PMID:7886003   PMID:7894156   PMID:7916309   PMID:7927709  
PMID:7949731   PMID:8009369   PMID:8027058   PMID:8040609   PMID:8054974   PMID:8069308   PMID:8088529   PMID:8088814   PMID:8098006   PMID:8248019   PMID:8270621   PMID:8286607  
PMID:8355697   PMID:8391931   PMID:8432998   PMID:8433000   PMID:8482578   PMID:8499946   PMID:8535092   PMID:8601447   PMID:8650184   PMID:8661718   PMID:8703136   PMID:8747923  
PMID:8759137   PMID:8783939   PMID:8789201   PMID:8812411   PMID:8838309   PMID:8875886   PMID:8903730   PMID:8921974   PMID:9133412   PMID:9133672   PMID:9205110   PMID:9321476  
PMID:9364439   PMID:9510032   PMID:9548375   PMID:9585436   PMID:9598328   PMID:9685680   PMID:9822646   PMID:9840923   PMID:9918801   PMID:10049573   PMID:10068480   PMID:10087289  
PMID:10087299   PMID:10087302   PMID:10191100   PMID:10192392   PMID:10337627   PMID:10349636   PMID:10373328   PMID:10395806   PMID:10452857   PMID:10491617   PMID:10517996   PMID:10602994  
PMID:10604301   PMID:10644000   PMID:10946246   PMID:10978518   PMID:11042159   PMID:11076861   PMID:11178107   PMID:11217851   PMID:11266470   PMID:11277491   PMID:11526516   PMID:11743578  
PMID:11829488   PMID:11917121   PMID:12140685   PMID:12183685   PMID:12205107   PMID:12466851   PMID:12477932   PMID:12644183   PMID:12829739   PMID:12893462   PMID:13877379   PMID:13880466  
PMID:14009199   PMID:14047421   PMID:14098314   PMID:14681479   PMID:15161859   PMID:15415586   PMID:15489334   PMID:15520276   PMID:15576400   PMID:15707965   PMID:15728386   PMID:15782199  
PMID:15985430   PMID:16038893   PMID:16103918   PMID:16141072   PMID:16141073   PMID:16162817   PMID:16185282   PMID:16219534   PMID:16247030   PMID:16332269   PMID:16505033   PMID:16505357  
PMID:16783635   PMID:16827931   PMID:16837549   PMID:16934245   PMID:17182842   PMID:17247190   PMID:17247200   PMID:17247280   PMID:17247639   PMID:17608931   PMID:17619104   PMID:17724166  
PMID:18042623   PMID:18117146   PMID:18158332   PMID:18354038   PMID:18402690   PMID:18650808   PMID:18715234   PMID:19293329   PMID:19403694   PMID:19493314   PMID:19561540   PMID:19855129  
PMID:19879162   PMID:20123016   PMID:20156971   PMID:20156973   PMID:20460369   PMID:20633051   PMID:20668223   PMID:20739468   PMID:21187289   PMID:21236676   PMID:21267068   PMID:21289306  
PMID:21350176   PMID:21677750   PMID:21757588   PMID:21833020   PMID:21873635   PMID:21949658   PMID:21976956   PMID:22275436   PMID:22556244   PMID:22705010   PMID:23203930   PMID:23322566  
PMID:23370329   PMID:23389444   PMID:23523356   PMID:23536636   PMID:23549422   PMID:23999499   PMID:24550361   PMID:24769727   PMID:24875170   PMID:24884952   PMID:25118265   PMID:25236450  
PMID:25872655   PMID:26472242   PMID:26620560   PMID:26876013   PMID:27011731   PMID:27072778   PMID:27390154   PMID:27857681   PMID:28684211   PMID:28981549   PMID:29129787   PMID:29370175  
PMID:29602773   PMID:29760184   PMID:29894691   PMID:30273664   PMID:30347088   PMID:30914642   PMID:31369031   PMID:31393857   PMID:31924474   PMID:32269095   PMID:32450896   PMID:33176797  
PMID:33361812   PMID:34678150   PMID:35091453   PMID:35129587   PMID:35185449   PMID:35266648   PMID:35444208   PMID:35469906   PMID:35568059   PMID:36867129   PMID:37488870   PMID:37901418  
PMID:38937109   PMID:39461968  


Genomics

Comparative Map Data
Tyrp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39480,752,360 - 80,769,973 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl480,752,360 - 80,769,956 (+)EnsemblGRCm39 Ensembl
GRCm38480,834,123 - 80,851,736 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl480,834,123 - 80,851,719 (+)EnsemblGRCm38mm10GRCm38
MGSCv37480,480,134 - 80,497,622 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36480,305,461 - 80,322,949 (+)NCBIMGSCv36mm8
Celera479,387,103 - 79,404,579 (+)NCBICelera
Cytogenetic Map4C3NCBI
cM Map437.89NCBI
TYRP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38912,693,385 - 12,710,285 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl912,685,439 - 12,710,285 (+)EnsemblGRCh38hg38GRCh38
GRCh37912,693,385 - 12,710,285 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36912,683,449 - 12,700,258 (+)NCBINCBI36Build 36hg18NCBI36
Build 34912,683,448 - 12,700,258NCBI
Celera912,625,996 - 12,642,868 (+)NCBICelera
Cytogenetic Map9p23NCBI
HuRef912,658,087 - 12,674,962 (+)NCBIHuRef
CHM1_1912,693,770 - 12,710,634 (+)NCBICHM1_1
T2T-CHM13v2.0912,702,721 - 12,719,618 (+)NCBIT2T-CHM13v2.0
Tyrp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85100,327,111 - 100,345,657 (+)NCBIGRCr8
mRatBN7.2595,280,982 - 95,299,516 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl595,280,982 - 95,299,516 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx597,659,552 - 97,678,085 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0599,480,692 - 99,499,221 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0599,470,354 - 99,488,887 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0598,387,291 - 98,406,083 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl598,387,291 - 98,406,083 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05102,430,674 - 102,449,645 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4599,518,306 - 99,537,289 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera593,854,189 - 93,872,732 (+)NCBICelera
Cytogenetic Map5q31NCBI
Tyrp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543415,913,968 - 15,931,740 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543415,913,208 - 15,932,193 (+)NCBIChiLan1.0ChiLan1.0
TYRP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211111,825,175 - 112,995,653 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan19111,831,122 - 113,001,599 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0912,502,610 - 12,550,203 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1912,950,831 - 12,996,808 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl912,950,831 - 12,996,799 (+)Ensemblpanpan1.1panPan2
TYRP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11133,317,084 - 33,336,029 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1133,317,121 - 33,335,498 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1132,027,482 - 32,045,312 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01134,222,689 - 34,240,515 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1134,222,689 - 34,240,515 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11132,928,733 - 32,946,547 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01132,713,987 - 32,731,848 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01133,376,152 - 33,394,014 (+)NCBIUU_Cfam_GSD_1.0
Tyrp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947148,084,995 - 148,102,753 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365396,537,509 - 6,556,513 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365396,537,448 - 6,555,440 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TYRP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1209,725,638 - 209,745,705 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11209,725,698 - 209,745,141 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21233,661,356 - 233,680,103 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TYRP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11266,841,867 - 66,861,730 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1266,842,926 - 66,859,842 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603855,076,959 - 55,095,761 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tyrp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473617,011,115 - 17,029,322 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473617,011,092 - 17,028,689 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tyrp1
1041 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:618
Count of miRNA genes:285
Interacting mature miRNAs:320
Transcripts:ENSMUST00000006151, ENSMUST00000102831, ENSMUST00000133655, ENSMUST00000133932
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
13506251Cytrq1_mcytokine response QTL 1 (mouse)46571808699718086Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
11532708Sluc43i_msusceptibility to lung cancer 43i (mouse)474444699108444983Mouse
11532707Sluc43h_msusceptibility to lung cancer 43h (mouse)474444699108444983Mouse
11532706Sluc43c_msusceptibility to lung cancer 43c (mouse)474444699108444983Mouse
11532705Sluc43b_msusceptibility to lung cancer 43b (mouse)474444699108444983Mouse
1302044Nss1_mNOD Sjogren's syndrome 1 (mouse)Not determined471982069105982216Mouse
11532704Sluc43a_msusceptibility to lung cancer 43a (mouse)474444699108444983Mouse
1357453Kidq4_mkidney weight QTL 4 (mouse)Not determined41789261688982216Mouse
1302031Bulb1_mbulb size 1 (mouse)Not determined474033887108034029Mouse
27095939Ulnl9_mulna length 9, 16 week (mouse)465318237118857197Mouse
27095938Ulnl6_mulna length 6, 10 week (mouse)46671823798588237Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
10043964Obq26_mobesity QTL 26 (mouse)Not determined45904725193047251Mouse
1301941Mmtg1_mmodifier of mammary tumor growth 1 (mouse)Not determined44565844283099157Mouse
13524841Hbasrq1_mhabituation of the acoustic startle response QTL 1 (mouse)45447158988471589Mouse
13524838Hbasrq1a_mhabituation of the acoustic startle response QTL 1a (mouse)45447158988471589Mouse
26884406Huml3_mhumerus length 3, 10 week (mouse)475618237100157197Mouse
11532703Sluc43g_msusceptibility to lung cancer 43g (mouse)474444699108444983Mouse
11532702Sluc43f_msusceptibility to lung cancer 43f (mouse)474444699108444983Mouse
11532701Sluc43e_msusceptibility to lung cancer 43e (mouse)474444699108444983Mouse
1558948Ath8_matherosclerosis 8 (mouse)Not determined445658442105156995Mouse
11532700Sluc43d_msusceptibility to lung cancer 43d (mouse)474444699108444983Mouse
11039517Ltpr4_mLeishmania tropica response 4 (mouse)479365751113365867Mouse
11039504Ltpr4a_mLeishmania tropica response 4a (mouse)479365751113365867Mouse
11039505Ltpr4c_mLeishmania tropica response 4c (mouse)479365751113365867Mouse
1301033Abbp2_mA/J and C57BL/6 blood pressure 2 (mouse)Not determined45355083993763305Mouse
1357870Pfat1_mpredicted fat percentage 1 (mouse)Not determined46361952697619685Mouse
1302057Pgia27_mproteoglycan induced arthritis 27 (mouse)Not determined470067227104067464Mouse
1301545Gauc_mglucose area under curve (mouse)Not determined476763107110763305Mouse
11039506Ltpr4b_mLeishmania tropica response 4b (mouse)479365751113365867Mouse
11532688Mh_mmodifier of hemostasis (mouse)44830477582304775Mouse
10412193Plep_mplasma lepin levels (mouse)Not determined474444699108444983Mouse
27095900Scvln9_msacral vertebrae length 2, 10 week (mouse)468018237107157197Mouse
4142203Lyr_mlymphoma resistance (mouse)Not determined8075244588769188Mouse
39128211Lwq22_mliver weight QTL 22 (mouse)41789261688982216Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
26884434Zlq1_mzygomatic length QTL 1, 5 week (mouse)453700000103257197Mouse
1300697Sle2_msystemic lupus erythmatosus susceptibility 2 (mouse)Not determined477957579111957775Mouse
4141810Ccmp4_mcerebellar cAMP 4 (mouse)Not determined46710026280769973Mouse
1301213Lgth3_mbody length 3 (mouse)Not determined45010026284100408Mouse
1301597Anxty_manxiety (mouse)Not determined474137574128009280Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
12880404Embq1_memotional behavior QTL 1 (mouse)46575720395921546Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
1301190Cd4ts2_mCD4 T cell subset 2 (mouse)Not determined46014527794145424Mouse
26884431Zlq8_mzygomatic length QTL 8, 16 week (mouse)474718237108357197Mouse
1357507Synch2_msynechia 2 (mouse)Not determined46014527794145424Mouse
12879903Berr8_mberghei resistance locus 8 (mouse)46422246098222460Mouse
13207572Spir2_mStreptococcus pneumoniae infection resistance 2 (mouse)45068279588510637Mouse
12879897Berr4_mberghei resistance locus 4 (mouse)471982069105982216Mouse
1301837Alcw2_malcohol withdrawal 2 (mouse)Not determined47585947481361052Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117072206Mouse
27095934Ulnl2_mulna length 2, 5 week (mouse)45770000094788237Mouse
12904738Idohtq_miris defect with ocular hypertension QTL (mouse)48075246793112991Mouse
4141911W6q15_mweight 6 weeks QTL 15 (mouse)Not determined1789261688982216Mouse
27095924Pglq2_mpelvic girdle length QTL 2, 5 week (mouse)469118237130727311Mouse
1357561Mbsyd_mmetabolic syndrome (mouse)Not determined466888445100888588Mouse
1301757Tlsr4_mthymic lymphoma suppressor region 4 (mouse)Not determined466757130100757258Mouse
27095917Scvln14_msacral vertebrae length 2, 16 week (mouse)468018237130277062Mouse
4141900Skts-fp1_mskin tumor susceptibility in FVB and PWK 1 (mouse)Not determined453550839124055180Mouse
1300966Pabr2_mplasma apolipoprotein B (human) regulator 2 (mouse)Not determined446332646105801860Mouse
1301995Lprm1_mlymphoproliferation modifier 1 (mouse)Not determined45010026284100408Mouse
1301739Pitm2_mprion incubation time 2 (mouse)Not determined471982069105982216Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse
27226724Tibw2_mtibia width 2, proximal, 10 week (mouse)443000000108357197Mouse
27095905Scvln3_msacral vertebrae length 2, 5 week (mouse)455600000128993793Mouse

Markers in Region
X03687  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38851,137,971 - 51,138,125UniSTSGRCm38
GRCm38480,851,008 - 80,851,162UniSTSGRCm38
MGSCv37480,496,912 - 80,497,066UniSTSGRCm37
MGSCv37852,223,325 - 52,223,479UniSTSGRCm37
Celera853,816,377 - 53,816,531UniSTS
Celera479,403,869 - 79,404,023UniSTS
Cytogenetic Map4C3UniSTS
cM Map438.0UniSTS
Whitehead/MRC_RH41127.86UniSTS
Whitehead_YAC4 UniSTS
D4Mit174  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38480,842,723 - 80,842,854UniSTSGRCm38
MGSCv37480,488,627 - 80,488,758UniSTSGRCm37
Celera479,395,590 - 79,395,721UniSTS
Cytogenetic Map4C3UniSTS
cM Map438.0UniSTS
Whitehead Genetic431.7UniSTS
Whitehead_YAC4 UniSTS
Tyrp1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38480,834,368 - 80,835,008UniSTSGRCm38
MGSCv37480,480,272 - 80,480,912UniSTSGRCm37
Celera479,387,241 - 79,387,881UniSTS
Cytogenetic Map4C3UniSTS
cM Map438.0UniSTS
PMC169968P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38480,834,068 - 80,834,303UniSTSGRCm38
MGSCv37480,479,972 - 80,480,207UniSTSGRCm37
Celera479,386,941 - 79,387,176UniSTS
Cytogenetic Map4C3UniSTS
cM Map438.0UniSTS
PMC169968P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38480,832,872 - 80,833,383UniSTSGRCm38
MGSCv37480,478,776 - 80,479,287UniSTSGRCm37
Celera479,385,745 - 79,386,256UniSTS
Cytogenetic Map4C3UniSTS
cM Map438.0UniSTS
Tyrp1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4C3UniSTS
Tyrp1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4C3UniSTS
X03687  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38480,851,414 - 80,851,497UniSTSGRCm38
MGSCv37480,497,318 - 80,497,401UniSTSGRCm37
Celera479,404,275 - 79,404,358UniSTS
Cytogenetic Map4C3UniSTS
Whitehead/MRC_RH41127.86UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001282014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001282015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_031202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006537781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006537782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF087673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL670884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC076598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M84966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X03687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X55154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X59513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000006151   ⟹   ENSMUSP00000006151
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl480,752,467 - 80,769,955 (+)Ensembl
GRCm38.p6 Ensembl480,834,230 - 80,851,718 (+)Ensembl
Ensembl Acc Id: ENSMUST00000102831   ⟹   ENSMUSP00000099895
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl480,752,544 - 80,769,956 (+)Ensembl
GRCm38.p6 Ensembl480,834,307 - 80,851,719 (+)Ensembl
Ensembl Acc Id: ENSMUST00000133655   ⟹   ENSMUSP00000117080
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl480,752,360 - 80,755,921 (+)Ensembl
GRCm38.p6 Ensembl480,834,123 - 80,837,684 (+)Ensembl
Ensembl Acc Id: ENSMUST00000133932   ⟹   ENSMUSP00000119167
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl480,764,825 - 80,769,237 (+)Ensembl
GRCm38.p6 Ensembl480,846,588 - 80,851,000 (+)Ensembl
RefSeq Acc Id: NM_001282014   ⟹   NP_001268943
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39480,752,450 - 80,769,973 (+)NCBI
GRCm38480,834,213 - 80,851,736 (+)NCBI
Celera479,387,086 - 79,404,597 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001282015   ⟹   NP_001268944
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39480,752,450 - 80,769,973 (+)NCBI
GRCm38480,834,213 - 80,851,736 (+)NCBI
Celera479,387,086 - 79,404,597 (+)NCBI
Sequence:
RefSeq Acc Id: NM_031202   ⟹   NP_112479
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39480,752,450 - 80,769,973 (+)NCBI
GRCm38480,834,213 - 80,851,736 (+)NCBI
MGSCv37480,480,134 - 80,497,622 (+)RGD
Celera479,387,086 - 79,404,597 (+)NCBI
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006537781   ⟹   XP_006537844
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39480,752,360 - 80,769,955 (+)NCBI
GRCm38480,834,123 - 80,851,718 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006537782   ⟹   XP_006537845
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39480,752,448 - 80,769,955 (+)NCBI
GRCm38480,834,211 - 80,851,718 (+)NCBI
Sequence:
RefSeq Acc Id: NP_112479   ⟸   NM_031202
- Peptide Label: precursor
- UniProtKB: P07147 (UniProtKB/Swiss-Prot),   Q3UFK6 (UniProtKB/TrEMBL),   Q3UFS3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001268943   ⟸   NM_001282014
- Peptide Label: precursor
- UniProtKB: P07147 (UniProtKB/Swiss-Prot),   Q3UFK6 (UniProtKB/TrEMBL),   Q3UFS3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001268944   ⟸   NM_001282015
- Peptide Label: precursor
- UniProtKB: P07147 (UniProtKB/Swiss-Prot),   Q3UFK6 (UniProtKB/TrEMBL),   Q3UFS3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006537844   ⟸   XM_006537781
- Peptide Label: isoform X1
- UniProtKB: Q3UFK6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006537845   ⟸   XM_006537782
- Peptide Label: isoform X1
- UniProtKB: Q3UFK6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000006151   ⟸   ENSMUST00000006151
Ensembl Acc Id: ENSMUSP00000117080   ⟸   ENSMUST00000133655
Ensembl Acc Id: ENSMUSP00000119167   ⟸   ENSMUST00000133932
Ensembl Acc Id: ENSMUSP00000099895   ⟸   ENSMUST00000102831
Protein Domains
Tyrosinase copper-binding

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P07147-F1-model_v2 AlphaFold P07147 1-537 view protein structure

Promoters
RGD ID:6883722
Promoter ID:EPDNEW_M5312
Type:initiation region
Name:Tyrp1_1
Description:Mus musculus tyrosinase-related protein 1 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38480,834,308 - 80,834,368EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:98881 AgrOrtholog
Ensembl Genes ENSMUSG00000005994 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000006151 ENTREZGENE
  ENSMUST00000006151.13 UniProtKB/Swiss-Prot
  ENSMUST00000102831 ENTREZGENE
  ENSMUST00000102831.8 UniProtKB/Swiss-Prot
  ENSMUST00000133655.8 UniProtKB/TrEMBL
  ENSMUST00000133932.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1280.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Tyrosinase/Hemocyanin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyrosinase_Cu-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Unchr_di-copper_centre UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:22178 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:98881 ENTREZGENE
NCBI Gene 22178 ENTREZGENE
PANTHER 5,6-DIHYDROXYINDOLE-2-CARBOXYLIC ACID OXIDASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYROSINASE FAMILY MEMBER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Tyrosinase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tyrp1 PhenoGen
PRINTS TYROSINASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE TYROSINASE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYROSINASE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48056 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2ADJ4_MOUSE UniProtKB/TrEMBL
  A2ADJ6_MOUSE UniProtKB/TrEMBL
  P07147 ENTREZGENE
  Q3UFK6 ENTREZGENE, UniProtKB/TrEMBL
  Q3UFS3 ENTREZGENE, UniProtKB/TrEMBL
  TYRP1_MOUSE UniProtKB/Swiss-Prot