Snrpb (small nuclear ribonucleoprotein B) - Rat Genome Database

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Gene: Snrpb (small nuclear ribonucleoprotein B) Mus musculus
Analyze
Symbol: Snrpb
Name: small nuclear ribonucleoprotein B
RGD ID: 733494
MGI Page MGI
Description: Enables histone pre-mRNA DCP binding activity. Predicted to be involved in spliceosomal snRNP assembly. Located in cytoplasm and nucleus. Part of histone pre-mRNA 3'end processing complex. Is expressed in several structures, including branchial arch; central nervous system; genitourinary system; limb; and sensory organ. Used to study cerebrocostomandibular syndrome. Human ortholog(s) of this gene implicated in cerebrocostomandibular syndrome and mixed connective tissue disease. Orthologous to human SNRPB (small nuclear ribonucleoprotein polypeptides B and B1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AL024368; AU018828; D10Mgi2; SM; sm protein B; SM-; SM-B; SM1; SM11; small nuclear ribonucleoprotein-associated protein B; SMB; SN; SNRNP-B
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm15033   Gm18670   Gm18671  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392130,013,560 - 130,031,184 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2130,013,555 - 130,021,323 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm382130,171,636 - 130,179,382 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2130,171,414 - 130,179,403 (-)Ensemblmm10GRCm38
MGSCv372129,997,372 - 130,005,100 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362129,863,087 - 129,870,802 (-)NCBIMGSCv36mm8
Celera2131,396,116 - 131,403,844 (-)NCBICelera
Cytogenetic Map2F1NCBI
cM Map263.19NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4-dinitrotoluene  (ISO)
6-propyl-2-thiouracil  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
bisphenol F  (EXP,ISO)
calcitriol  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (EXP)
choline  (EXP)
chromium(6+)  (EXP)
ciguatoxin CTX1B  (EXP)
cisplatin  (ISO)
clobetasol  (EXP)
clozapine  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
coumestrol  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
elemental selenium  (ISO)
Enterolactone  (ISO)
fenthion  (EXP)
fipronil  (ISO)
flutamide  (ISO)
folic acid  (EXP)
folpet  (EXP)
gentamycin  (ISO)
glafenine  (ISO)
hydralazine  (ISO)
isoprenaline  (EXP)
ivermectin  (ISO)
L-methionine  (EXP)
lead(0)  (ISO)
methidathion  (EXP)
methimazole  (ISO)
methotrexate  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nefazodone  (ISO)
nickel sulfate  (ISO)
nitrates  (EXP)
Nutlin-3  (ISO)
okadaic acid  (ISO)
paracetamol  (EXP)
propiconazole  (ISO)
selenium atom  (ISO)
sodium arsenite  (ISO)
Soman  (ISO)
sulfadimethoxine  (ISO)
sunitinib  (ISO)
tamoxifen  (EXP)
temozolomide  (ISO)
thapsigargin  (ISO)
titanium dioxide  (EXP)
trichloroethene  (ISO)
triphenyl phosphate  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)
Yessotoxin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal bone ossification  (IAGP)
abnormal cranial ganglia morphology  (IAGP)
abnormal craniofacial morphology  (IAGP)
abnormal cranium morphology  (IAGP)
abnormal DNA-templated transcription  (IAGP)
abnormal embryonic tissue morphology  (IAGP)
abnormal forebrain morphology  (IAGP)
abnormal frontonasal prominence morphology  (IAGP)
abnormal geniculate ganglion morphology  (IAGP)
abnormal glossopharyngeal nerve morphology  (IAGP)
abnormal head development  (IAGP)
abnormal head shape  (IAGP)
abnormal jaw morphology  (IAGP)
abnormal mandible morphology  (IAGP)
abnormal mandibular nerve morphology  (IAGP)
abnormal maxillary nerve morphology  (IAGP)
abnormal metopic suture morphology  (IAGP)
abnormal nasopharynx morphology  (IAGP)
abnormal nose morphology  (IAGP)
abnormal ophthalmic nerve morphology  (IAGP)
abnormal premaxilla morphology  (IAGP)
abnormal temporal bone morphology  (IAGP)
abnormal tracheal cartilage morphology  (IAGP)
abnormal trigeminal nerve morphology  (IAGP)
abnormal vagus nerve morphology  (IAGP)
abnormal vestibular ganglion morphology  (IAGP)
absent alisphenoid bone  (IAGP)
absent aorticopulmonary septum  (IAGP)
absent frontonasal prominence  (IAGP)
absent gastric milk in neonates  (IAGP)
absent hyoid bone  (IAGP)
absent mandibular angle  (IAGP)
absent mandibular condyloid process  (IAGP)
absent mandibular coronoid process  (IAGP)
absent maxillary prominence  (IAGP)
absent nasal septum  (IAGP)
absent tympanic ring  (IAGP)
absent zygomatic arch  (IAGP)
athymia  (IAGP)
basisphenoid bone hypoplasia  (IAGP)
cleft palate  (IAGP)
decreased cranial neural crest cell number  (IAGP)
domed cranium  (IAGP)
ectopic bone  (IAGP)
ectopic cartilage  (IAGP)
edema  (IAGP)
enlarged lateral ventricles  (IAGP)
first pharyngeal arch hypoplasia  (IAGP)
frontal bone hypoplasia  (IAGP)
frontonasal prominence hypoplasia  (IAGP)
hindbrain hypoplasia  (IAGP)
hyoid bone hypoplasia  (IAGP)
increased cranial neural crest cell apoptosis  (IAGP)
interparietal bone hypoplasia  (IAGP)
lethality throughout fetal growth and development, incomplete penetrance  (IAGP)
mandible hypoplasia  (IAGP)
mandibular prominence hypoplasia  (IAGP)
maxilla hypoplasia  (IAGP)
maxillary prominence hypoplasia  (IAGP)
Meckel's cartilage hypoplasia  (IAGP)
microcephaly  (IAGP)
micrognathia  (IAGP)
midbrain hypoplasia  (IAGP)
nasal bone hypoplasia  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
parietal bone hypoplasia  (IAGP)
perinatal lethality, complete penetrance  (IAGP)
pharyngeal arch hypoplasia  (IAGP)
prenatal lethality, complete penetrance  (IAGP)
short snout  (IAGP)
small dorsal root ganglion  (IAGP)
small ears  (IAGP)
small temporal bone squamous part  (IAGP)
thin cerebral cortex  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors. Chen YI, etal., Nucleic Acids Res. 2007;35(12):3928-44. Epub 2007 May 30.
2. The U2 small nuclear ribonucleoprotein particle as an autoantigen. Analysis with sera from patients with overlap syndromes. Craft J, etal., J Clin Invest. 1988 Jun;81(6):1716-24.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Cerebro-costo-mandibular syndrome: Clinical, radiological, and genetic findings. Tooley M, etal., Am J Med Genet A. 2016 May;170A(5):1115-26. doi: 10.1002/ajmg.a.37587. Epub 2016 Mar 12.
7. Identification of novel deregulated RNA metabolism-related genes in non-small cell lung cancer. Valles I, etal., PLoS One. 2012;7(8):e42086. doi: 10.1371/journal.pone.0042086. Epub 2012 Aug 2.
8. The spliceosome: design principles of a dynamic RNP machine. Wahl MC, etal., Cell. 2009 Feb 20;136(4):701-18. doi: 10.1016/j.cell.2009.02.009.
Additional References at PubMed
PMID:1376292   PMID:7671812   PMID:7680326   PMID:7736591   PMID:7744014   PMID:9724750   PMID:10349636   PMID:10556313   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861  
PMID:11217851   PMID:12466851   PMID:12520002   PMID:15369763   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16236758   PMID:16602821   PMID:17218272   PMID:18495660   PMID:19470752  
PMID:20059953   PMID:21677750   PMID:21873635   PMID:26336360   PMID:26584622   PMID:26951610   PMID:27160897   PMID:29459677   PMID:29530978   PMID:30550785   PMID:32554809   PMID:33835288  
PMID:35593225   PMID:36058892  


Genomics

Comparative Map Data
Snrpb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392130,013,560 - 130,031,184 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2130,013,555 - 130,021,323 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm382130,171,636 - 130,179,382 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2130,171,414 - 130,179,403 (-)Ensemblmm10GRCm38
MGSCv372129,997,372 - 130,005,100 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362129,863,087 - 129,870,802 (-)NCBIMGSCv36mm8
Celera2131,396,116 - 131,403,844 (-)NCBICelera
Cytogenetic Map2F1NCBI
cM Map263.19NCBI
SNRPB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38202,461,642 - 2,470,789 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl202,461,634 - 2,470,884 (-)Ensemblhg38GRCh38
GRCh37202,442,288 - 2,451,435 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36202,390,281 - 2,399,499 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34202,390,280 - 2,399,499NCBI
Celera202,506,726 - 2,515,940 (-)NCBICelera
Cytogenetic Map20p13NCBI
HuRef202,392,318 - 2,401,533 (-)NCBIHuRef
CHM1_1202,442,630 - 2,451,845 (-)NCBICHM1_1
T2T-CHM13v2.0202,492,015 - 2,501,159 (-)NCBIT2T-CHM13v2.0
Snrpb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83137,824,870 - 137,832,479 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3137,824,683 - 137,832,515 (-)EnsemblGRCr8
mRatBN7.23117,369,816 - 117,379,344 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3117,370,100 - 117,379,339 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3121,269,784 - 121,277,399 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03129,865,407 - 129,873,022 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03127,525,903 - 127,533,514 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03122,696,125 - 122,703,734 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3122,695,939 - 122,703,734 (-)Ensemblrn6Rnor6.0
Rnor_5.03129,196,987 - 129,204,596 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43117,770,454 - 117,778,063 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3116,187,312 - 116,194,920 (-)NCBICelera
RGSC_v3.13117,676,055 - 117,681,341 (-)NCBI
Cytogenetic Map3q36NCBI
Snrpb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541513,520,530 - 13,531,466 (-)Ensembl
ChiLan1.0NW_00495541513,522,638 - 13,530,725 (-)NCBIChiLan1.0ChiLan1.0
SNRPB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2213,452,181 - 3,461,468 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1203,449,012 - 3,458,251 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0202,571,393 - 2,580,642 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1202,335,499 - 2,344,763 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl202,335,499 - 2,344,763 (-)EnsemblpanPan2panpan1.1
SNRPB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12418,673,975 - 18,683,315 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2418,674,039 - 18,683,229 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2418,503,090 - 18,512,433 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02419,131,533 - 19,140,918 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2419,131,583 - 19,140,916 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12418,687,465 - 18,696,814 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02418,798,089 - 18,807,428 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02419,126,999 - 19,136,354 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Snrpb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640167,710,846 - 167,732,709 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648516,157,485 - 16,163,698 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648516,142,231 - 16,161,761 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNRPB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1733,080,407 - 33,094,602 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11733,072,104 - 33,094,847 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21737,510,693 - 37,512,404 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SNRPB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1254,064,240 - 54,073,341 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl254,063,999 - 54,073,367 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666087480,215 - 489,316 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snrpb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247413,691,676 - 3,703,255 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247413,694,488 - 3,703,169 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Snrpb
851 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:640
Count of miRNA genes:386
Interacting mature miRNAs:440
Transcripts:ENSMUST00000103199, ENSMUST00000139225, ENSMUST00000147570, ENSMUST00000150835
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301905Lgth2_mbody length 2 (mouse)Not determined2111173704145173821Mouse
1302033Nsv1_mNeuroadapted Sindbis viral RNA level 1 (mouse)Not determined2111623386145623526Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
13506763Tbvq1_mtrabecular bone volume QTL 1 (mouse)2126041920135441920Mouse
11039520Ltpr2h_mLeishmania tropica response 2h (mouse)2112212746146213005Mouse
11039521Ltpr2g_mLeishmania tropica response 2g (mouse)2115212857149212994Mouse
12910799Pwgrq2_mpre-weaning growth rate QTL 2 (mouse)2118589253160611165Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
12910795Pwbwq5_mpost-weaning body weight QTL 5 (mouse)2118589253160611165Mouse
27226761Feml18_mfemur length 18, 16 week (mouse)294230345154241920Mouse
12910812Pwgrq1_mpre-weaning growth rate QTL 1 (mouse)2118589253160611165Mouse
12910814Pwbwq1_mpre-weaning body weight QTL 1 (mouse)2118589253160611165Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
12904935Edlmmq2_mextensor digitorum longus muscle mass QTL 2 (mouse)297210364131210364Mouse
1302071Fembrs1_mfemur breaking strength 1 (mouse)Not determined2100942930134943090Mouse
10045885Cplaq15_mcircadian period of locomotor activity 15 (mouse)Not determined2110916118154354667Mouse
1302203Gvhd3_mgraft-versus host disease 3 (mouse)Not determined2100942930134943090Mouse
1300793Pcfm2_mperiosteal circumference and femur length 2 (mouse)Not determined2111173704145173821Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284013198148667470Mouse
1301822Pgia2_mproteoglycan induced arthritis 2 (mouse)Not determined2123937311157937424Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
1301031Bdln3_mbody length 3 (mouse)Not determined2127664019161664118Mouse
1301029T2dm3_mtype 2 diabetes mellitus 3 (mouse)Not determined2114288075132714157Mouse
27226788Feml13_mfemur length 13, 10 week (mouse)2102630345159941920Mouse
1301295Prdt1_mprion disease incubation time 1 (mouse)Not determined2116077623150077741Mouse
1301294Hrtfm5_mheart failure modifier 5 (mouse)Not determined2122883015156883131Mouse
12904954Gmmq2_mgastrocnemius muscle mass QTL 2 (mouse)297210364131210364Mouse
11038696Ltpr2f_mLeishmania tropica response 2f (mouse)2115212857149212994Mouse
1301330Tbbmd2_mtotal body bone mineral density 2 (mouse)Not determined2100942930134943090Mouse
1301201Chab1_mcholesterol absorption 1 (mouse)Not determined2111551028145551163Mouse
11038699Ltpr2b_mLeishmania tropica response 2b (mouse)2112212746146213005Mouse
11038700Ltpr2a_mLeishmania tropica response 2a (mouse)2112212746146213005Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103095716167212356Mouse
11049568Lmr28c_mleishmaniasis resistance 28c (mouse)297123370131123532Mouse
11049569Lmr28d_mleishmaniasis resistance 28d (mouse)297123370131123532Mouse
1301087Bbaa15_mB.burgdorferi-associated arthritis 15 (mouse)Not determined2110489658144489807Mouse
1301825Pbrgcsf1_mperipheral blood stem cell response to granulocyte colony stimulating factor 1 (mouse)Not determined2106233580140233729Mouse
4141802Ignpq1_mIgA nephropathy QTL 1 (mouse)Not determined2100824060134824269Mouse
1558990Skmw9_mskeletal muscle weight 9 (mouse)Not determined2111173704145173821Mouse
1301066Otx2m2_morthodenticle homolog 2 (Drosophila) modifier 2 (mouse)Not determined2123231973148700377Mouse
1558989Gnf4_mgrowth and fatness 4 (mouse)Not determined2128173704132714157Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284013198148522175Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2117942930174324863Mouse
27226749Femd10_mfemur midshaft diameter 10, 16 week (mouse)2124441920168241920Mouse
1301755Hrq1_mheart rate quantitative locus 1 (mouse)Not determined2111173704145173821Mouse
1302143Bwq5_mbody weight (mouse)Not determined2127664019161664118Mouse
12880427V25Dq3_mvitamin D inactive form serum level QTL 3 (mouse)2129341920163341920Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
1558881Ses7_msalmonella enteritidis susceptibility 7 (mouse)Not determined2116306330150306474Mouse
10043875Bw25_mbody weight QTL 25 (mouse)Not determined2107255676141255676Mouse
1300712El2_mepilepsy 2 (mouse)Not determined2122207146142532135Mouse

Markers in Region
RH136496  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382130,171,711 - 130,171,914UniSTSGRCm38
MGSCv372129,997,447 - 129,997,650UniSTSGRCm37
Celera2131,396,191 - 131,396,394UniSTS
Cytogenetic Map2F1UniSTS
cM Map273.0UniSTS
RH125534  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381040,549,624 - 40,549,736UniSTSGRCm38
GRCm382130,171,770 - 130,171,885UniSTSGRCm38
MGSCv372129,997,506 - 129,997,621UniSTSGRCm37
MGSCv371040,269,430 - 40,269,542UniSTSGRCm37
Celera1041,439,142 - 41,439,254UniSTS
Celera2131,396,250 - 131,396,365UniSTS
Cytogenetic Map2F1UniSTS
cM Map273.0UniSTS
MARC_5069-5070:996690109:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381040,549,195 - 40,549,396UniSTSGRCm38
GRCm382130,173,107 - 130,173,739UniSTSGRCm38
MGSCv372129,998,843 - 129,999,475UniSTSGRCm37
MGSCv371040,269,001 - 40,269,202UniSTSGRCm37
Celera2131,397,587 - 131,398,219UniSTS
Cytogenetic Map2F1UniSTS
cM Map273.0UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001412650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_182019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_182020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_182021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK077537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL833804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG086527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY280308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY474459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X59747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000103199   ⟹   ENSMUSP00000099488
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2130,013,555 - 130,021,323 (-)Ensembl
GRCm38.p6 Ensembl2130,171,635 - 130,179,403 (-)Ensembl
Ensembl Acc Id: ENSMUST00000139225
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2130,171,414 - 130,179,303 (-)Ensembl
Ensembl Acc Id: ENSMUST00000147570   ⟹   ENSMUSP00000143633
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2130,013,707 - 130,021,323 (-)Ensembl
GRCm38.p6 Ensembl2130,171,787 - 130,179,403 (-)Ensembl
Ensembl Acc Id: ENSMUST00000150835
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2130,018,772 - 130,021,254 (-)Ensembl
GRCm38.p6 Ensembl2130,176,852 - 130,179,334 (-)Ensembl
Ensembl Acc Id: ENSMUST00020183458
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2130,015,648 - 130,021,055 (-)Ensembl
RefSeq Acc Id: NM_001412650   ⟹   NP_001399579
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392130,013,564 - 130,021,286 (-)NCBI
RefSeq Acc Id: NM_001412651   ⟹   NP_001399580
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392130,013,564 - 130,021,286 (-)NCBI
RefSeq Acc Id: NM_001412652   ⟹   NP_001399581
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392130,013,564 - 130,021,286 (-)NCBI
RefSeq Acc Id: NM_001412653   ⟹   NP_001399582
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392130,013,564 - 130,021,286 (-)NCBI
RefSeq Acc Id: NM_001412654   ⟹   NP_001399583
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392130,013,564 - 130,021,286 (-)NCBI
RefSeq Acc Id: NM_001412655   ⟹   NP_001399584
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392130,013,564 - 130,021,286 (-)NCBI
RefSeq Acc Id: NM_001412656   ⟹   NP_001399585
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392130,013,564 - 130,021,286 (-)NCBI
RefSeq Acc Id: NM_001412657   ⟹   NP_001399586
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392130,013,564 - 130,021,286 (-)NCBI
RefSeq Acc Id: NM_001412658   ⟹   NP_001399587
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392130,013,564 - 130,021,286 (-)NCBI
RefSeq Acc Id: NM_001412659   ⟹   NP_001399588
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392130,013,564 - 130,021,286 (-)NCBI
RefSeq Acc Id: NM_001420982   ⟹   NP_001407911
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392130,013,564 - 130,021,286 (-)NCBI
RefSeq Acc Id: NM_009225   ⟹   NP_033251
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392130,013,564 - 130,021,286 (-)NCBI
GRCm382130,171,636 - 130,179,364 (-)NCBI
MGSCv372129,997,372 - 130,005,100 (-)RGD
Celera2131,396,116 - 131,403,844 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_182019
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392130,013,564 - 130,021,286 (-)NCBI
RefSeq Acc Id: NR_182020
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392130,013,564 - 130,021,286 (-)NCBI
RefSeq Acc Id: NR_182021
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392130,013,564 - 130,021,286 (-)NCBI
RefSeq Acc Id: XM_036159932   ⟹   XP_036015825
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392130,013,560 - 130,031,184 (-)NCBI
Sequence:
RefSeq Acc Id: NP_033251   ⟸   NM_009225
- Peptide Label: isoform 1
- UniProtKB: Q3UJT1 (UniProtKB/Swiss-Prot),   P27048 (UniProtKB/Swiss-Prot),   O70499 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000143633   ⟸   ENSMUST00000147570
Ensembl Acc Id: ENSMUSP00000099488   ⟸   ENSMUST00000103199
RefSeq Acc Id: XP_036015825   ⟸   XM_036159932
- Peptide Label: isoform X1
- UniProtKB: P27048 (UniProtKB/Swiss-Prot),   Q3UJT1 (UniProtKB/Swiss-Prot),   O70499 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399586   ⟸   NM_001412657
- Peptide Label: isoform 10
- UniProtKB: O70499 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399588   ⟸   NM_001412659
- Peptide Label: isoform 9
RefSeq Acc Id: NP_001399585   ⟸   NM_001412656
- Peptide Label: isoform 7
- UniProtKB: O70499 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399587   ⟸   NM_001412658
- Peptide Label: isoform 8
RefSeq Acc Id: NP_001399580   ⟸   NM_001412651
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001399584   ⟸   NM_001412655
- Peptide Label: isoform 6
- UniProtKB: O70499 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399581   ⟸   NM_001412652
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001399579   ⟸   NM_001412650
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001399582   ⟸   NM_001412653
- Peptide Label: isoform 5
- UniProtKB: O70499 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399583   ⟸   NM_001412654
- Peptide Label: isoform 5
- UniProtKB: O70499 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001407911   ⟸   NM_001420982
- Peptide Label: isoform 9
Protein Domains
Sm

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P27048-F1-model_v2 AlphaFold P27048 1-231 view protein structure

Promoters
RGD ID:6832800
Promoter ID:MM_KWN:31718
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000036800,   OTTMUST00000036801,   OTTMUST00000036802,   OTTMUST00000036803
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362130,004,684 - 130,005,184 (-)MPROMDB
RGD ID:6878732
Promoter ID:EPDNEW_M2817
Type:initiation region
Name:Snrpb_1
Description:Mus musculus small nuclear ribonucleoprotein B , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382130,179,366 - 130,179,426EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:98342 AgrOrtholog
Ensembl Genes ENSMUSG00000027404 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000103199 ENTREZGENE
  ENSMUST00000103199.9 UniProtKB/Swiss-Prot
  ENSMUST00000147570 ENTREZGENE
Gene3D-CATH 2.30.30.100 UniProtKB/Swiss-Prot
InterPro IPR047575 UniProtKB/Swiss-Prot
  LSM_dom_euk/arc UniProtKB/Swiss-Prot
  LSM_dom_sf UniProtKB/Swiss-Prot
  snRNP-assoc_SmB/SmN UniProtKB/Swiss-Prot
KEGG Report mmu:20638 UniProtKB/Swiss-Prot
MGD MGI:98342 ENTREZGENE
NCBI Gene 20638 ENTREZGENE
PANTHER SNRPN UPSTREAM READING FRAME PROTEIN, SNURF UniProtKB/Swiss-Prot
  SNRPN UPSTREAM READING FRAME PROTEIN-RELATED UniProtKB/Swiss-Prot
Pfam LSM UniProtKB/Swiss-Prot
PhenoGen Snrpb PhenoGen
PIRSF snRNP_SmB/SmN UniProtKB/Swiss-Prot
PROSITE PS52002 UniProtKB/Swiss-Prot
SMART SM00651 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF50182 UniProtKB/Swiss-Prot
UniProt A0A0G2JGN4_MOUSE UniProtKB/TrEMBL
  O70499 ENTREZGENE, UniProtKB/TrEMBL
  P27048 ENTREZGENE
  Q3UJT1 ENTREZGENE
  RSMB_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3UJT1 UniProtKB/Swiss-Prot